ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39b20 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 142 bits (358), Expect = 2e-34 Identities = 67/67 (100%), Positives = 67/67 (100%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDD 137 KRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDD Sbjct: 398 KRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDD 457 Query: 136 GSCLYTF 116 GSCLYTF Sbjct: 458 GSCLYTF 464
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 111 bits (277), Expect = 5e-25 Identities = 51/67 (76%), Positives = 59/67 (88%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDD 137 KRVQLA+TY+SQAALGDAN DA+ G+FYGKGAQQ LPVPEGCTD A+N+DPTARSDD Sbjct: 408 KRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDD 467 Query: 136 GSCLYTF 116 G+C+Y F Sbjct: 468 GTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 105 bits (262), Expect = 3e-23 Identities = 49/65 (75%), Positives = 55/65 (84%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDD 137 KRVQLAD YMS AALGDAN+DA+ G+F+GK AQQ +LPV +GCTD AKNYDPTARSDD Sbjct: 406 KRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDD 465 Query: 136 GSCLY 122 GSC Y Sbjct: 466 GSCTY 470
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 105 bits (262), Expect = 3e-23 Identities = 51/69 (73%), Positives = 56/69 (81%), Gaps = 2/69 (2%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQ--GTLPVPEGCTDQNAKNYDPTARS 143 KRVQLAD YMS+AALGDAN DA+K G+FYG A Q G +PVPEGCTD A NYDPTARS Sbjct: 408 KRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARS 467 Query: 142 DDGSCLYTF 116 DDGSC+Y F Sbjct: 468 DDGSCVYKF 476
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 55.1 bits (131), Expect = 4e-08 Identities = 25/31 (80%), Positives = 28/31 (90%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFYGK 224 KRVQLAD Y+S+AALG AN DAMKTG+FYGK Sbjct: 395 KRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 55.1 bits (131), Expect = 4e-08 Identities = 25/30 (83%), Positives = 28/30 (93%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFYG 227 KRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 398 KRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/30 (80%), Positives = 27/30 (90%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFYG 227 KRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 408 KRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 50.8 bits (120), Expect = 8e-07 Identities = 22/29 (75%), Positives = 28/29 (96%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFY 230 KRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 404 KRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSF 233 KRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 408 KRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 47.4 bits (111), Expect = 9e-06 Identities = 20/29 (68%), Positives = 28/29 (96%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFY 230 KRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 412 KRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 47.4 bits (111), Expect = 9e-06 Identities = 20/29 (68%), Positives = 28/29 (96%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFY 230 KRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 410 KRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/28 (71%), Positives = 25/28 (89%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSF 233 KRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 412 KRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 45.4 bits (106), Expect = 4e-05 Identities = 20/29 (68%), Positives = 24/29 (82%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTGSFY 230 KRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 412 KRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = -3 Query: 316 KRVQLADTYMSQAALGDANQDAMKTG 239 KRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 407 KRVQLAETYLKEAALGDANADAINTG 432
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = -2 Query: 242 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRR 135 +FL R RS R AR R K Q LRPNG E+RR Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRR 169
>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier| family 20 member 1-B) Length = 685 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Frame = +2 Query: 119 GVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRILVSITQSCL 283 G++ ++AP W++VLG ++ F G + + SF GT++ +V++ Q+C+ Sbjct: 15 GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACI 68
>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = -3 Query: 292 YMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 170 Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = -3 Query: 292 YMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 170 Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = -3 Query: 292 YMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 170 Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = -3 Query: 292 YMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 170 Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +1 Query: 133 CRRRSLPLGRSSWHFGRCNLP 195 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>TTUC1_AGRVI (Q44471) Probable tartrate dehydrogenase/decarboxylase ttuC (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 364 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 266 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 162 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>TTUC5_AGRVI (O34295) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 358 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 266 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 162 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>TTUC3_AGRVI (O34296) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 358 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 266 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 162 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (Solute carrier| family 20 member 1) Length = 685 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = +2 Query: 101 KVACLKGVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRILVSITQ 274 +V G++ ++ P W++VLG ++ F G + + SF GT++ +V++ Q Sbjct: 9 EVTSALGIENVKIMEPFLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQ 65 Query: 275 SCL 283 +C+ Sbjct: 66 ACI 68
>DNL3_HUMAN (P49916) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III)| (Polydeoxyribonucleotide synthase [ATP] 3) Length = 922 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 292 YMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNAKNY 161 Y+++ A+ D D + G+FYG+G++ G + + GC D ++ + Sbjct: 593 YLNEGAMADT-ADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKW 636
>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic| region Length = 1764 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 199 VPEGCTDQNAKNYDPTARSD 140 VPE TD N NYD T R D Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402
>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 220 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +2 Query: 59 WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 220 ++RCG + ++K K AVV C VL G+L GA R+ +C Sbjct: 57 YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113
>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c| Length = 288 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 85 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 189 ++S+ +S KGS + PL + W FG CN Sbjct: 4 RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,287,636 Number of Sequences: 219361 Number of extensions: 903983 Number of successful extensions: 2037 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2006 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2036 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
