ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39b20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 603 e-169
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 426 e-116
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 377 e-101
4gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 313 2e-82
5gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 246 4e-62
6gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 246 4e-62
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 182 5e-43
8gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 180 2e-42
9dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 178 7e-42
10dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 178 7e-42
11gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
12gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
13gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 4e-28
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
15dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
16dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
17dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
18dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 4e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
20dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 133 4e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 1e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 2e-23
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 1e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
26gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
27gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
28gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 2e-08
29gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 2e-08
30gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 64 3e-07
31gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 62 1e-06
32gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 62 1e-06
33gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 62 1e-06
34gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 44 0.27
35gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.27
36emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.27
37gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.1
38gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.1
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
41emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.1
42gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.1
43gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 4.2
44ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 4.2
45gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 4.2
46gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 4.2
47gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 4.2
48gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 4.2
49gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 4.2
50ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 4.2
51gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 4.2
52dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 4.2
53gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 4.2
54gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 4.2
55gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 4.2
56emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 4.2
57ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 4.2
58gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 4.2
59gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 4.2 
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  603 bits (304), Expect = e-169
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                        
Query: 15   aatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggac 74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 aatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggac 1320

                                                                        
Query: 75   ttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctg 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 ttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctg 1260

                                                                        
Query: 135  ccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttcc 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 ccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttcc 1200

                                                                        
Query: 195  ggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaaccagtcttcatcgca 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 ggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaaccagtcttcatcgca 1140

                                                                        
Query: 255  tcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgc 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 tcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgc 1080

                
Query: 315  ttga 318
            ||||
Sbjct: 1079 ttga 1076
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  426 bits (215), Expect = e-116
 Identities = 215/215 (100%)
 Strand = Plus / Minus

                                                                        
Query: 15   aatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggac 74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7739 aatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggac 7680

                                                                        
Query: 75   ttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctg 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7679 ttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctg 7620

                                                                        
Query: 135  ccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttcc 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7619 ccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttcc 7560

                                               
Query: 195  ggcacgggcaaagtaccttgctgtgctcctttacc 229
            |||||||||||||||||||||||||||||||||||
Sbjct: 7559 ggcacgggcaaagtaccttgctgtgctcctttacc 7525



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            ||||||||||||||||||||||||||||||||
Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttga 7214
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  377 bits (190), Expect = e-101
 Identities = 211/214 (98%), Gaps = 3/214 (1%)
 Strand = Plus / Minus

                                                                        
Query: 19   tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625

                                                                        
Query: 79   -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 137
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565

                                                                        
Query: 138  t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 196
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505

                                              
Query: 197  ca-cgggcaaagtaccttgctgtgctcctttacc 229
            || |||||||||||||||||||||||||||||||
Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacc 1471



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            ||||||||||||||||||||||||||||||||
Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttga 1331
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  313 bits (158), Expect = 2e-82
 Identities = 203/218 (93%)
 Strand = Plus / Minus

                                                                        
Query: 101  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 160
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 161  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 220
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                                        
Query: 221  tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 280
            |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310

                                                  
Query: 281  ctggctcatgtaggtgtcagcaagctgcacacgcttga 318
            |||||||||||| ||||| |||||||||||||||||||
Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttga 1272
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  246 bits (124), Expect = 4e-62
 Identities = 189/208 (90%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                       
Query: 28  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 81
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 82  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 141
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 142 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 201
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                       
Query: 202 gcaaagtaccttgctgtgctcctttacc 229
           ||||||||||||||||||| ||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacc 540



 Score =  174 bits (88), Expect = 1e-40
 Identities = 91/92 (98%)
 Strand = Plus / Minus

                                                                       
Query: 227 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433

                                           
Query: 287 catgtaggtgtcagcaagctgcacacgcttga 318
           ||||||||||||||||||||||||||||||||
Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttga 401
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  246 bits (124), Expect = 4e-62
 Identities = 189/208 (90%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                        
Query: 28   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 81
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 82   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 141
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 142  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 201
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                        
Query: 202  gcaaagtaccttgctgtgctcctttacc 229
            ||||||||||||||||||| ||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390



 Score =  174 bits (88), Expect = 1e-40
 Identities = 91/92 (98%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            ||||||||||||||||||||||||||||||||
Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttga 1251
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                       
Query: 227 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227

                                           
Query: 287 catgtaggtgtcagcaagctgcacacgcttga 318
           ||||||||||||||||||||||||||||||||
Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttga 195
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  180 bits (91), Expect = 2e-42
 Identities = 171/195 (87%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                        
Query: 42   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 95
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 96   -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 154
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 155  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 214
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                           
Query: 215  ctgtgctcctttacc 229
             ||||||||||||||
Sbjct: 1413 ttgtgctcctttacc 1399



 Score =  143 bits (72), Expect = 4e-31
 Identities = 87/92 (94%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            |||||| ||||| |||||||||||||||||||
Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttga 1262
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  178 bits (90), Expect = 7e-42
 Identities = 182/212 (85%), Gaps = 3/212 (1%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                                                        
Query: 170  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 226
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1250 caagtactgctcagccagctgcacacgcttga 1219
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  178 bits (90), Expect = 7e-42
 Identities = 182/212 (85%), Gaps = 3/212 (1%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                                                        
Query: 170  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 226
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1285 caagtactgctcagccagctgcacacgcttga 1254
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 110    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 170    ggcattttggtcggtgcaaccttccggcacgggca 204
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                          
Query: 227    accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
              |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369

                                              
Query: 287    catgtaggtgtcagcaagctgcacacgcttga 318
              || |||    ||||| ||||||||||||||||
Sbjct: 108370 caagtactgctcagccagctgcacacgcttga 108401



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 128    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 187
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 188    accttccggcacggg 202
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 110   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 170   ggcattttggtcggtgcaaccttccggcacgggca 204
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                         
Query: 227   accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
             |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246

                                             
Query: 287   catgtaggtgtcagcaagctgcacacgcttga 318
             || |||    ||||| ||||||||||||||||
Sbjct: 30247 caagtactgctcagccagctgcacacgcttga 30278



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 128   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 187
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 188   accttccggcacggg 202
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 170  ggcattttggtcggtgcaaccttccggcacgggca 204
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1255 caagtactgctcagccagctgcacacgcttga 1224
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 110      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 170      ggcattttggtcggtgcaaccttccggcacgggca 204
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                            
Query: 227      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508

                                                
Query: 287      catgtaggtgtcagcaagctgcacacgcttga 318
                || |||    ||||| ||||||||||||||||
Sbjct: 28303509 caagtactgctcagccagctgcacacgcttga 28303540



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 128      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 187
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 188      accttccggcacggg 202
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 170  ggcattttggtcggtgcaaccttccggcacgggca 204
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1249 caagtactgctcagccagctgcacacgcttga 1218
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 170  ggcattttggtcggtgcaaccttccggcacgggca 204
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1287 caagtactgctcagccagctgcacacgcttga 1256
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 170  ggcattttggtcggtgcaaccttccggcacgggca 204
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1286 caagtactgctcagccagctgcacacgcttga 1255
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 170  ggcattttggtcggtgcaaccttccggcacgggca 204
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1070 caagtactgctcagccagctgcacacgcttga 1039
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 110      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 170      ggcattttggtcggtgcaaccttccggcacgggca 204
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                            
Query: 227      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957

                                                
Query: 287      catgtaggtgtcagcaagctgcacacgcttga 318
                || |||    ||||| ||||||||||||||||
Sbjct: 28285958 caagtactgctcagccagctgcacacgcttga 28285989



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 128      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 187
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 188      accttccggcacggg 202
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 170  ggcattttggtcggtgcaaccttccggcacgggca 204
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1291 caagtactgctcagccagctgcacacgcttga 1260
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 1e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 116 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 175
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 176 ttggtcggtgcaaccttccggcacgggca 204
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  117 bits (59), Expect = 2e-23
 Identities = 87/95 (91%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 110  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 170  ggcattttggtcggtgcaaccttccggcacgggca 204
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 227  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299

                                            
Query: 287  catgtaggtgtcagcaagctgcacacgcttga 318
            || |||    ||||| ||||||||||||||||
Sbjct: 1298 caagtactgctcagccagctgcacacgcttga 1267
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 1e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 110 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 170 ggcattttggtcggtgcaaccttccggcacgggca 204
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 110     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 170     ggcattttggtcggtgcaaccttccggcacgggca 204
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 110   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 169
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 170   ggcattttggtcggtgcaaccttccggcacgggca 204
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 120  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 179
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 180  tcggtgcaaccttc 193
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 120  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 179
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 180  tcggtgcaaccttc 193
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 120  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 179
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 180  tcggtgcaaccttc 193
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 120  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 179
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 180  tcggtgcaaccttc 193
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
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>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                       
Query: 227 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 286
           |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505

                                           
Query: 287 catgtaggtgtcagcaagctgcacacgcttga 318
           || |||    ||||| ||||||||||||||||
Sbjct: 504 caagtactgctcagccagctgcacacgcttga 473
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>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                       
Query: 232 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 291
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                      
Query: 292 aggtgtcagcaagctgcacacgcttga 318
           |  ||||||||||||||||||||||||
Sbjct: 859 acttgtcagcaagctgcacacgcttga 833
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>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 291
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                       
Query: 292  aggtgtcagcaagctgcacacgcttga 318
            |  ||||||||||||||||||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttga 1228
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>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 291
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                       
Query: 292  aggtgtcagcaagctgcacacgcttga 318
            |  ||||||||||||||||||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttga 1228
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>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 252  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 301
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
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>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 265   catcacccagagctgcctggct 286
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
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>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    aatatatttagagatatattaa 36
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
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>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    tatatttagagatatattaac 37
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
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>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    tatatttagagatatattaac 37
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 86      aaacatcagatattaaaagtg 106
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 86      aaacatcagatattaaaagtg 106
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     aaacatcagatattaaaagtg 106
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 17   tatatttagagatatattaac 37
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
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>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 265  catcacccagagctgcctggctca 288
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
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>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 296 gtcagcaagctgcacacgct 315
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     tcagatattaaaagtggcat 110
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     tcagatattaaaagtggcat 110
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tcagatattaaaagtggcat 110
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 265  catcacccagagctgcctggctca 288
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    aatatatttagagatatatt 34
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 265  catcacccagagctgcctggctca 288
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 119  ggtgtaaaggcagctgccgtcgtcgctc 146
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    aaacatgcccagcaatcgcttgga 62
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 265  catcacccagagctgcctggctca 288
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
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>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 265  catcacccagagctgcctggctca 288
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
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>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 265  catcacccagagctgcctggctca 288
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   tggcatgcttaaaaggtgta 124
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 265  catcacccagagctgcctggctca 288
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    aatatatttagagatatatt 34
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 90     atcagatattaaaagtggcatgct 113
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,362,808
Number of Sequences: 3902068
Number of extensions: 2362808
Number of successful extensions: 46377
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46158
Number of HSP's gapped (non-prelim): 178
length of query: 318
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 296
effective length of database: 17,147,199,772
effective search space: 5075571132512
effective search space used: 5075571132512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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