ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39b14 |
|---|---|
| Clone Library Name | barley_pub |
>MYOM1_HUMAN (P52179) Myomesin-1 (190 kDa titin-associated protein) (190 kDa| connectin-associated protein) Length = 1451 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +1 Query: 37 HSMRCANDRGD*LTDCWGPPISSSSSPTRAW 129 HS++C+ R D L W PP+ S +P + Sbjct: 810 HSLKCSEVRKDSLVLQWKPPVHSGRTPVTGY 840
>FMT_ACIAD (Q6F6P9) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 319 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 35 GTPCDAPTTEETSSQTVGDLLSVHLPPQRALGRNRGRTPXRI 160 GTP A T + +T D+++V+ P R GR + TP + Sbjct: 7 GTPDFAATALDALIKTPHDIVAVYTQPDRKAGRGQKLTPSPV 48
>SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1060 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 86 GDLLSVHLPPQ-RALGRNRGRTPXRIACARVRRPPSSIDRHAHEDGPHLMELEGVTRKLR 262 GDL+ + P RALG+ G+T R+A A ++ D ++++G L Sbjct: 882 GDLVDYSVKPNFRALGKRFGKTTPRVAQAIREADAKTLVERLRADNAATVDVDGEQVVLS 941 Query: 263 ADQ 271 AD+ Sbjct: 942 ADE 944
>EXOM_RHIME (P33695) Succinoglycan biosynthesis protein exoM (EC 2.-.-.-)| Length = 309 Score = 28.1 bits (61), Expect = 5.2 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Frame = +2 Query: 209 HEDGPHLMELEGVTRKLRADQGFTHGGRXHQEEEGLRPXWLSR*IGAGDGFHGVALXLTX 388 HE P K R G THG ++ GLR W GA GF A L Sbjct: 210 HEPVPENRASLAWLAKRRFRSGQTHGRLLAEKAHGLRQAWNIALAGAKSGFCATAAVLCF 269 Query: 389 -AXGRRGR 409 + RR R Sbjct: 270 PSAARRNR 277
>H2B_AGABI (P78567) Histone H2B| Length = 143 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = -1 Query: 364 MEPIPGTNLSREPXRTKALFLLMPPSAM--SEALISSKLPGDPLQLHEMRSILVSMPVYR 191 M P P + + P T + + +A S++ +SS G+ + + R S +Y+ Sbjct: 1 MAPKPASTAGKAPASTASKAPVKSDAAKTASKSKVSSGADGEKKKRKKTRKETYSSYIYK 60 Query: 190 AWRTTHPSAGNSXRSPA 140 + HP G S ++ A Sbjct: 61 VLKQVHPDTGISNKAMA 77
>KR102_HUMAN (P60368) Keratin-associated protein 10-2 (Keratin-associated| protein 10.2) (High sulfur keratin-associated protein 10.2) (Keratin-associated protein 18-2) (Keratin-associated protein 18.2) Length = 255 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +1 Query: 82 CWGPPISSSSSPTRAWEE*RPDS-GENCLR*GASSSKLDRPACSRGWTASHGAG 240 C P S +SSP +P +C R +S S L RP CSR + S +G Sbjct: 197 CCVPVCSGASSPCCQQSSCQPACCTSSCCRPSSSVSLLCRPVCSRPASCSFSSG 250
>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4| (Immediate-early protein IE175) Length = 1415 Score = 27.7 bits (60), Expect = 6.8 Identities = 25/92 (27%), Positives = 37/92 (40%) Frame = -1 Query: 412 KPPPPSXSLR*X*CYTMEPIPGTNLSREPXRTKALFLLMPPSAMSEALISSKLPGDPLQL 233 +P PP + C + P P T+ R + +P + S SS P P Sbjct: 72 RPSPPRSGPKKDFCGDL-PAPLTSGPRLTTPSSGRMSELPHTTSSPR--SSPRPRGPETS 128 Query: 232 HEMRSILVSMPVYRAWRTTHPSAGNSXRSPAS 137 I++S P TTH + G+ RSP+S Sbjct: 129 PSNEHIIISPPRNPPSNTTHRNVGHVSRSPSS 160
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 27.7 bits (60), Expect = 6.8 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 7/81 (8%) Frame = +1 Query: 139 RPDSGENCLR*GASSSKLDRPACSRGWTASHGAGGGHQEA*S*SRLHSW-------RTXA 297 RP G CL+ +R W+ GA GG A SR S R + Sbjct: 1848 RPRGGGACLQ-------------ARTWSVDLGARGGKVYARCRSRSGSCGGPTTRGRRFS 1894 Query: 298 SGGRGPSSLXALEINWCRGWV 360 +G RG A + +W R WV Sbjct: 1895 AGSRGRRGARASQDDWPRDWV 1915
>ALFC_SPIOL (P16096) Fructose-bisphosphate aldolase, chloroplast precursor (EC| 4.1.2.13) Length = 394 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 268 SRLHSWRTXASGGRGPSSLXALEINWCRGWVPWCSIXANXGL 393 +R WRT S GPS+L E W G + +I + GL Sbjct: 179 ARFAKWRTVVSIPNGPSALAVKEAAW--GLARYAAITQDNGL 218
>ALFD_PEA (Q01517) Fructose-bisphosphate aldolase 2, chloroplast (EC| 4.1.2.13) Length = 349 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 268 SRLHSWRTXASGGRGPSSLXALEINWCRGWVPWCSIXANXGL 393 +R WRT S GPS+L E W G + +I + GL Sbjct: 133 ARFAKWRTVVSIPNGPSALAVKEAAW--GLARYAAISQDNGL 172
>PUO_MICRU (P40974) Putrescine oxidase (EC 1.4.3.10)| Length = 478 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -1 Query: 361 EPIPGTNLS----REPXRTKALFLLMPPSAMSEALISSKLPGDPLQLHEMRSILVSMPVY 194 E +PGT ++ R R K + + +PP+ S LP Q+H+ +S+ + + V+ Sbjct: 259 EHVPGTPVTVWSDRLTVRAKDVVVAVPPNLYSRISFEPPLPRLQHQMHQHQSLGLVIKVH 318 Query: 193 RAWRT 179 + T Sbjct: 319 AVYET 323
>YKR4_EBV (P30117) Hypothetical protein BKRF4| Length = 217 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +2 Query: 50 APTTEETSSQTVGDLLSVHLPPQRALGRNRGRTPXRIACARVRRPPSSIDRHAHEDGPH 226 +P+T+++S T S P RA R P R + RPP+ + + + GPH Sbjct: 115 SPSTQQSSGLTPTPSFS--RPRTRAPPRPPAPAPVRGRASAPPRPPAPVQQSTKDKGPH 171
>ALFC_PEA (Q01516) Fructose-bisphosphate aldolase 1, chloroplast precursor| (EC 4.1.2.13) (Fragment) Length = 356 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 268 SRLHSWRTXASGGRGPSSLXALEINWCRGWVPWCSIXANXGL 393 +R WRT S GPS+L E W G + +I + GL Sbjct: 139 ARFAKWRTVVSIPNGPSALAVKEAAW--GLARYAAISQDNGL 178
>ALFC_ORYSA (Q40677) Fructose-bisphosphate aldolase, chloroplast precursor (EC| 4.1.2.13) (ALDP) Length = 388 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +1 Query: 268 SRLHSWRTXASGGRGPSSLXALEINWCRGWVPWCSIXANXGL 393 +R WRT S GPS L E W G + +I + GL Sbjct: 171 ARFAKWRTVVSIPNGPSELAVKEAAW--GLARYAAISQDNGL 210
>NPC2_SCHPO (Q9C0X9) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 188 Score = 27.3 bits (59), Expect = 8.8 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +3 Query: 96 YQFIFLPNARLGGIEAGLRXELPALGCVVLQAR*TGMLTRMDRISWSWRGSPGSLELIKA 275 Y F+ + N RL + EL A+ C V G++T+ IS W PG ++ Sbjct: 105 YGFVRIVNERLDICDKAY--ELAAVECPVEP----GIITKQATISLPWAIPPGRYHVLAT 158 Query: 276 SLMADG 293 + ADG Sbjct: 159 AYNADG 164
>FMT_XANOR (Q5H5D0) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 307 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +2 Query: 35 GTPCDAPTTEETSSQTVGDLLSVHLPPQRALGRNRGRTPXRIACARVRR 181 GTP A + ++Q ++++V+ P R GR RG TP + + R Sbjct: 7 GTPDFAVASLRAAAQR-HEVVAVYTQPDRPAGRGRGLTPSPVKIEAIAR 54
>FMT_XANCP (Q8P4G0) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 307 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +2 Query: 26 VTKGTPCDAPTTEETSSQTVGDLLSVHLPPQRALGRNRGRTPXRIACARVRR 181 V GTP A + ++Q ++++V+ P R GR RG TP + + R Sbjct: 4 VFAGTPDFAVASLRAAAQR-HEVVAVYTQPDRPAGRGRGLTPSPVKLDAIAR 54
>RNZ_SALTY (P60195) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 222 RISWSWRGSPGSLELIKASLMADGGIRRKRAFVL 323 R+S SW P +E I A + D G+R+ AF L Sbjct: 106 RLSGSWTDFPLQIEEISAGDILDDGLRKVTAFRL 139
>RNZ_SALTI (P60194) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 222 RISWSWRGSPGSLELIKASLMADGGIRRKRAFVL 323 R+S SW P +E I A + D G+R+ AF L Sbjct: 106 RLSGSWTDFPLQIEEISAGDILDDGLRKVTAFRL 139
>RNZ_SALPA (Q5PN69) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 222 RISWSWRGSPGSLELIKASLMADGGIRRKRAFVL 323 R+S SW P +E I A + D G+R+ AF L Sbjct: 106 RLSGSWTDFPLQIEEISAGDILDDGLRKVTAFRL 139
>RNZ_SALCH (Q57M43) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 222 RISWSWRGSPGSLELIKASLMADGGIRRKRAFVL 323 R+S SW P +E I A + D G+R+ AF L Sbjct: 106 RLSGSWTDFPLQIEEISAGDILDDGLRKVTAFRL 139
>LZTS2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 (Protein| LAPSER1) Length = 669 Score = 27.3 bits (59), Expect = 8.8 Identities = 24/83 (28%), Positives = 33/83 (39%) Frame = +1 Query: 73 LTDCWGPPISSSSSPTRAWEE*RPDSGENCLR*GASSSKLDRPACSRGWTASHGAGGGHQ 252 LT +G P SSSSS +SSS D+P GW + G G Sbjct: 179 LTQLFGGPASSSSS-------------------SSSSSAADKPLAFSGWAS--GCPSGTL 217 Query: 253 EA*S*SRLHSWRTXASGGRGPSS 321 + L S T ++GG P++ Sbjct: 218 SDSGRNSLSSLPTYSTGGAEPTT 240
>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 27.3 bits (59), Expect = 8.8 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Frame = +2 Query: 32 KGTPCDAPTTEETSSQTVGD---LLSVHLPPQRALGRNRGRTPXRIA--CARVRRPPSSI 196 KG+P + T E T S + L PP +A N R ++ C V PPS Sbjct: 269 KGSPFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFRASPKLKPPCKTVVPPPSKK 328 Query: 197 DRHAHEDGPH 226 R++ G H Sbjct: 329 TRYSESSGTH 338
>DX26B_MOUSE (Q8BND4) Protein DDX26B| Length = 861 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = -1 Query: 358 PIPGTNLSREPXRTK----ALFLLMPPSAMSEALISSKLPGDPLQLHEM 224 P+PG+ L++EP R AL L +P A +E +P D + +M Sbjct: 151 PLPGSELTKEPFRWDQRLFALVLRLPGVASTEPEQLGSVPSDESAITQM 199
>LZTS2_MOUSE (Q91YU6) Leucine zipper putative tumor suppressor 2| Length = 671 Score = 27.3 bits (59), Expect = 8.8 Identities = 24/83 (28%), Positives = 33/83 (39%) Frame = +1 Query: 73 LTDCWGPPISSSSSPTRAWEE*RPDSGENCLR*GASSSKLDRPACSRGWTASHGAGGGHQ 252 LT +G P SSSSS +SSS D+P GW + G G Sbjct: 179 LTQLFGGPASSSSS-------------------SSSSSAADKPLALSGWAS--GCPSGTL 217 Query: 253 EA*S*SRLHSWRTXASGGRGPSS 321 + L S T ++GG P++ Sbjct: 218 SDSGRNSLSSLPTYSTGGAEPTT 240 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,407,933 Number of Sequences: 219361 Number of extensions: 1323918 Number of successful extensions: 3627 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3625 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
