ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPO_MALDO (P43309) Polyphenol oxidase, chloroplast precursor (EC... 29 4.2
2GIS4_YEAST (Q04233) Protein GIS4 28 9.3

>PPO_MALDO (P43309) Polyphenol oxidase, chloroplast precursor (EC 1.10.3.1)|
           (PPO) (Catechol oxidase)
          Length = 593

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 117 DSIYIYV*FP-F*FSPHSRYLCFPFHFYYVYSLSRSSKKL 1
           D  Y  V FP      H+ +L FPFH YY+Y   +   KL
Sbjct: 180 DGAYDQVGFPELELQIHNSWLFFPFHRYYLYFFEKILGKL 219



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>GIS4_YEAST (Q04233) Protein GIS4|
          Length = 774

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 21  TMNRHNKNEKGNKDSGSEEKIRK 89
           T N H  N KGN +S S+ +++K
Sbjct: 682 TKNSHKPNSKGNNESNSKNELKK 704


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,424,080
Number of Sequences: 219361
Number of extensions: 151855
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 80,573,946
effective HSP length: 15
effective length of database: 77,283,531
effective search space used: 1854804744
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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