ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal39b08 |
|---|---|
| Clone Library Name | barley_pub |
>PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73| (Pseudo-response regulator 73) (OsPRR73) Length = 767 Score = 310 bits (793), Expect = 3e-84 Identities = 163/225 (72%), Positives = 169/225 (75%), Gaps = 5/225 (2%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 NDD TR VV ALLRKC YEVI AENGL AWQ LED+QN IDLVLTEV MP LSGIGLLSK Sbjct: 88 NDDSTRQVVSALLRKCCYEVIPAENGLHAWQCLEDLQNHIDLVLTEVVMPRLSGIGLLSK 147 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRRCXXXX 308 ITSH ICK IPVIMMS NDSM TVFKCLSKGAVDFLVKPIRKNELK LWQH+WRRC Sbjct: 148 ITSHKICKDIPVIMMSSNDSMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 207 Query: 307 XXXXXX--XIQKCSKPKTGDEYAKNSGGSH---XXXXXXXXXXDFSVGPNARDGSDNGSG 143 QKC+KPK DEY NSG ++ D SVG NARDGSDNGSG Sbjct: 208 GSGSESGIRTQKCTKPKVDDEYENNSGSNNDNEDDDDNDEDDDDLSVGHNARDGSDNGSG 267 Query: 142 TQSSWTKRAVEIDSPQLVSSDHLSDSPDSTCAQVIHPRSEIGSNR 8 TQSSWTKRAVEIDSPQ +S D SD PDSTCAQVIHP SEI SNR Sbjct: 268 TQSSWTKRAVEIDSPQQMSPDQPSDLPDSTCAQVIHPTSEICSNR 312
>PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37| (Pseudo-response regulator 37) (OsPRR37) Length = 742 Score = 281 bits (718), Expect = 2e-75 Identities = 147/224 (65%), Positives = 164/224 (73%), Gaps = 4/224 (1%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +DD TR VV ALLR C YEVI AENG AW YLED+QN IDLVLTEV MP +SGI LLS+ Sbjct: 69 SDDSTRQVVSALLRHCMYEVIPAENGQQAWTYLEDMQNSIDLVLTEVVMPGVSGISLLSR 128 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRRCXXXX 308 I +H+ICK IPVIMMS ND+M TVFKCLSKGAVDFLVKPIRKNELK LWQH+WRRC Sbjct: 129 IMNHNICKNIPVIMMSSNDAMGTVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 188 Query: 307 XXXXXX--XIQKCSKPKTGDEYAKNSGGSHXXXXXXXXXXDFSVGPNARDGSDNGSGT-- 140 QKC+K K+GDE N+G + +G NARDGSDNGSGT Sbjct: 189 GSGSESGIQTQKCAKSKSGDESNNNNGSNDDDDDDGVI-----MGLNARDGSDNGSGTQA 243 Query: 139 QSSWTKRAVEIDSPQLVSSDHLSDSPDSTCAQVIHPRSEIGSNR 8 QSSWTKRAVEIDSPQ +S D L+D PDSTCAQVIH +S+I SNR Sbjct: 244 QSSWTKRAVEIDSPQAMSPDQLADPPDSTCAQVIHLKSDICSNR 287
>APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7| (Pseudo-response regulator 7) Length = 727 Score = 237 bits (604), Expect = 3e-62 Identities = 127/224 (56%), Positives = 150/224 (66%), Gaps = 4/224 (1%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 NDDCTR++V ALLR C YEV+ A NG+ AW+ LED+ N ID+VLTEV MP LSGIGLL K Sbjct: 85 NDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCK 144 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRRCXXXX 308 I +H + IPVIMMS +DSM VFKCLSKGAVDFLVKPIRKNELK LWQH+WRRC Sbjct: 145 ILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSS 204 Query: 307 ---XXXXXXXIQKCSKPKTGDEYAKNSGGSHXXXXXXXXXXDFSVGPNARDGSDNGSGTQ 137 QK K K+ + ++SG S S+G NA DGS +GSG Q Sbjct: 205 GSGSESGTHQTQKSVKSKSIKKSDQDSGSSDENENG-------SIGLNASDGSSDGSGAQ 257 Query: 136 SSWTKRAVEI-DSPQLVSSDHLSDSPDSTCAQVIHPRSEIGSNR 8 SSWTK+AV++ DSP+ VS L D DSTCAQV+H E SN+ Sbjct: 258 SSWTKKAVDVDDSPRAVS---LWDRVDSTCAQVVHSNPEFPSNQ 298
>APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3| (Pseudo-response regulator 3) Length = 495 Score = 193 bits (490), Expect = 4e-49 Identities = 110/215 (51%), Positives = 128/215 (59%), Gaps = 12/215 (5%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 NDD TRH+V ALL+ C YEV + + L+AW+ LED ++ IDLVLTEV MP SG GLLSK Sbjct: 71 NDDSTRHIVTALLKNCSYEVTAVPDVLEAWRILEDEKSCIDLVLTEVDMPVHSGTGLLSK 130 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRRCXXXX 308 I SH K IPVIMMS +DSM VFKCLS GAVDFLVKPIRKNELK LWQH+WRRC Sbjct: 131 IMSHKTLKNIPVIMMSSHDSMVLVFKCLSNGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 190 Query: 307 XXXXXX--XIQKCSKPKT----------GDEYAKNSGGSHXXXXXXXXXXDFSVGPNARD 164 +K KP++ DE+ SG S N Sbjct: 191 GSGSESGIHDKKSVKPESTQGSENDASISDEHRNESGSSGGLS-------------NQDG 237 Query: 163 GSDNGSGTQSSWTKRAVEIDSPQLVSSDHLSDSPD 59 GSDNGSGTQSSWTKRA D+ S+ D+P+ Sbjct: 238 GSDNGSGTQSSWTKRA--SDTKSTSPSNQFPDAPN 270
>PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95| (Pseudo-response regulator 95) (OsPRR95) Length = 623 Score = 159 bits (403), Expect = 5e-39 Identities = 86/190 (45%), Positives = 111/190 (58%) Frame = -3 Query: 664 DDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKI 485 DD TRH++ ALLRKCGY V +A +G+ AW L++ IDLVLTEV +P +SG LLS I Sbjct: 51 DDSTRHIICALLRKCGYRVAAASDGVKAWDILKEKSFNIDLVLTEVELPLMSGFLLLSTI 110 Query: 484 TSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRRCXXXXX 305 H CK IPVIMMS NDS+S VFKC+ KGA DFLVKPIRKNEL+ LWQH+WR+ Sbjct: 111 MEHDACKNIPVIMMSSNDSVSMVFKCMLKGAADFLVKPIRKNELRNLWQHVWRKQLSSGV 170 Query: 304 XXXXXXIQKCSKPKTGDEYAKNSGGSHXXXXXXXXXXDFSVGPNARDGSDNGSGTQSSWT 125 Q+ + + ++ + H +V + S+ S QSS T Sbjct: 171 LDVQHTQQEDNLTERHEQKTGVTKAEHVTE---------NVVHKNMECSEQESDAQSSCT 221 Query: 124 KRAVEIDSPQ 95 + +E DS Q Sbjct: 222 RSELEADSRQ 231
>APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5| (Pseudo-response regulator 5) Length = 558 Score = 149 bits (376), Expect = 7e-36 Identities = 83/207 (40%), Positives = 111/207 (53%) Frame = -3 Query: 664 DDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKI 485 DD TR ++ ALLRKC Y V + +GL AW+ L+ +DL+LTEV +P +SG LL+ I Sbjct: 58 DDSTRQIIAALLRKCSYRVAAVPDGLKAWEMLKGKPESVDLILTEVDLPSISGYALLTLI 117 Query: 484 TSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRRCXXXXX 305 H ICK IPVIMMS DS++TV+KC+ KGA D+LVKP+R+NEL+ LWQH+WRR Sbjct: 118 MEHDICKNIPVIMMSTQDSVNTVYKCMLKGAADYLVKPLRRNELRNLWQHVWRR-QTSLA 176 Query: 304 XXXXXXIQKCSKPKTGDEYAKNSGGSHXXXXXXXXXXDFSVGPNARDGSDNGSGTQSSWT 125 + + K A NS G S NG QSS T Sbjct: 177 PDSFPWNESVGQQKAEGASANNSNGKRDDHVV----------------SGNGGDAQSSCT 220 Query: 124 KRAVEIDSPQLVSSDHLSDSPDSTCAQ 44 + +E +S + S D+ CA+ Sbjct: 221 RPEMEGESADVEVS--ARDAVQMECAK 245
>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9| (Pseudo-response regulator 9) Length = 468 Score = 142 bits (357), Expect = 1e-33 Identities = 61/115 (53%), Positives = 85/115 (73%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D TR ++ ALLRKC Y+V++ +GL AW+ L++ + IDL+LTE+ +P +SG LL+ Sbjct: 44 SDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLAL 103 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H CK IPVIMMS DS+ V KC+ +GA D+L+KP+RKNELK LWQH+WRR Sbjct: 104 VMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRR 158
>APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1| (Pseudo-response regulator 1) (Timing of CAB expression 1) (ABI3-interacting protein 1) Length = 618 Score = 93.6 bits (231), Expect = 5e-19 Identities = 47/115 (40%), Positives = 65/115 (56%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ND + V LL +C Y+V + ++ L ID++L E+ +P G+ +L Sbjct: 26 NDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEIDLPMAKGMKMLRY 85 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 IT + IPVIMMS+ D + V KCL GA D+LVKP+R NEL LW H+WRR Sbjct: 86 ITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRR 140
>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1| (Pseudo-response regulator 1) (OsPRR1) Length = 518 Score = 88.2 bits (217), Expect = 2e-17 Identities = 46/111 (41%), Positives = 63/111 (56%) Frame = -3 Query: 655 TRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 +R V+R LL C Y+V A++ L ID++L EV +P +L I + Sbjct: 40 SREVLR-LLCNCSYQVTCAKSPRQVINVLNCEAGEIDIILAEVDLPVSKCFKMLKYIARN 98 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + IP+IMMS D +S V KCL GA ++LVKP+R NEL LW H+WRR Sbjct: 99 KELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLWTHVWRR 149
>REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase regA (EC| 3.1.4.17) (PDEase regA) Length = 793 Score = 81.6 bits (200), Expect = 2e-15 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +DD R ++ LL+K Y V NG AW+Y+ Q + DLVLT+V MP ++G LL + Sbjct: 167 DDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHITGFDLLQR 226 Query: 487 ITSHSICKGIPVIMMSKND-SMSTVFKCLSKGAVDFLVKPIRKNELK----TLWQHIWRR 323 I H + + IPVI+MS + G DFL KPI K LK T+ Q IW+R Sbjct: 227 INDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTVLQSIWQR 286
>ARR1_ARATH (Q940D0) Two-component response regulator ARR1| Length = 690 Score = 79.7 bits (195), Expect = 7e-15 Identities = 41/108 (37%), Positives = 63/108 (58%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++ +LR C YEV A L ++ D+V+++V MP + G LL + + Sbjct: 51 ILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHV---GLE 107 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PVIMMS +DS S V K ++ GAVD+L+KP+R LK +WQH+ R+ Sbjct: 108 MDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRK 155
>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like| protein 4) Length = 552 Score = 79.0 bits (193), Expect = 1e-14 Identities = 39/115 (33%), Positives = 66/115 (57%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D +++ LL++C Y V + A + L + +N+ DLV+++V MP + G LL Sbjct: 24 DDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLEL 83 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + +PVIM+S + V K + GA D+L+KP+R ELK +WQH+ R+ Sbjct: 84 V---GLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRK 135
>ARR12_ARATH (P62598) Two-component response regulator ARR12| Length = 596 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/114 (35%), Positives = 65/114 (57%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D ++ +LLR C Y V + A + L + +N+ DLV+++V MP + G LL Sbjct: 24 DDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLEL 83 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWR 326 + + +PVIM+S + V K ++ GA D+L+KP+R ELK +WQH+ R Sbjct: 84 V---GLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVR 134
>ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Receiver-like| protein 3) Length = 521 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/108 (37%), Positives = 65/108 (60%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++ +L+KC YEV + +A + L + ++ D+V+++V MP + G LL + + Sbjct: 25 ILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHV---GLE 81 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PVIMMS + S V K + GA D+L+KPIR ELK +WQH+ R+ Sbjct: 82 LDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRK 129
>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like| protein 5) Length = 664 Score = 77.8 bits (190), Expect = 3e-14 Identities = 40/108 (37%), Positives = 61/108 (56%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++ +L C Y V A L +N D+V+++V MP + G LL + + Sbjct: 42 ILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHV---GLE 98 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PVIMMS +DS S V K ++ GAVD+L+KP+R LK +WQH+ R+ Sbjct: 99 MDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRK 146
>ARR14_ARATH (Q8L9Y3) Two-component response regulator ARR14| Length = 382 Score = 72.0 bits (175), Expect = 2e-12 Identities = 40/115 (34%), Positives = 65/115 (56%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D ++ +L + Y+V A L + ++ DLVL++V MP ++G LL + Sbjct: 18 DDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQ 77 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + +PVIMMS + +TV ++ GA D+L+KPIR ELK +WQH+ RR Sbjct: 78 VGLLEM--DLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRR 130
>ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7| Length = 206 Score = 71.2 bits (173), Expect = 3e-12 Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 9/118 (7%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYL-----EDVQN----RIDLVLTEVAMPCLSGIG 500 R V+ LLR +V + E+G A QYL + N +++L++T+ +MP LSG Sbjct: 36 RKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIVTDYSMPGLSGYD 95 Query: 499 LLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWR 326 LL KI S + +PV++MS + + + +CL +GA +FL+KP++ ++K + Q I R Sbjct: 96 LLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLADVKRIKQLIMR 153
>ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3| Length = 231 Score = 69.7 bits (169), Expect = 7e-12 Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 9/118 (7%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYL---------EDVQNRIDLVLTEVAMPCLSGIG 500 R V+ LLR +V + ++G A ++L E + ++DL++T+ MP ++G Sbjct: 45 RIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLIITDYCMPGMTGYE 104 Query: 499 LLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWR 326 LL KI + K +PV++MS + M+ + +CL +GA DFL+KP++ ++K L ++ R Sbjct: 105 LLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLADVKRLRSYLTR 162
>ARR4_ARATH (O82798) Two-component response regulator ARR4 (Response regulator| 1) Length = 259 Score = 69.3 bits (168), Expect = 1e-11 Identities = 37/116 (31%), Positives = 68/116 (58%), Gaps = 9/116 (7%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYL---------EDVQNRIDLVLTEVAMPCLSGIG 500 R V+ LLR +V + ++G A ++L E + ++DL++T+ MP ++G Sbjct: 46 RIVIERLLRITSCKVTAVDSGWRALEFLGLDNEKASAEFDRLKVDLIITDYCMPGMTGYE 105 Query: 499 LLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 LL KI S + +PV++MS + ++ + +CL +GA DFL+KP++ ++K L H+ Sbjct: 106 LLKKIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLADVKRLRSHL 161
>ARR20_ARATH (Q9LZJ8) Putative two-component response regulator ARR20| Length = 426 Score = 68.9 bits (167), Expect = 1e-11 Identities = 35/107 (32%), Positives = 62/107 (57%) Frame = -3 Query: 643 VRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICK 464 ++ L+ + Y+V E+G +A +L ++ IDLV+ + MP ++G+ L+ I Sbjct: 54 LKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDINGLDALNIIGKQM--- 110 Query: 463 GIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV++MS TV + + GA DFLVKP+ K + LW+H++R+ Sbjct: 111 DLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRK 157
>ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18| Length = 635 Score = 67.4 bits (163), Expect = 4e-11 Identities = 39/115 (33%), Positives = 58/115 (50%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 N C R + LLR C Y V A + L + N DLV+++V MP G LL Sbjct: 26 NPTCLRKLEELLLR-CKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTDGFKLLEI 84 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +PVIM+S + +V K + GA D+LVKP+ EL+ +W H+ ++ Sbjct: 85 ----GLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVVKK 135
>ARR15_ARATH (Q7G8V2) Two-component response regulator ARR15| Length = 206 Score = 67.0 bits (162), Expect = 5e-11 Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 9/118 (7%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLE-DVQN--------RIDLVLTEVAMPCLSGIG 500 R V+ LL+ +V + E+G A QYL D N +++L++T+ +MP L+G Sbjct: 30 RKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLIVTDYSMPGLTGYE 89 Query: 499 LLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWR 326 LL KI S + IPV++MS + + +C+ +GA +FL+KP++ ++K L + I R Sbjct: 90 LLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLADVKRLKELIMR 147
>ARR17_ARATH (Q9FPR6) Two-component response regulator ARR17| Length = 153 Score = 66.2 bits (160), Expect = 8e-11 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 10/117 (8%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYL--------EDVQN--RIDLVLTEVAMPCLSGI 503 R +V +L+ +V +AENGL A +YL + + N +++L++T+ MP ++G Sbjct: 32 RKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLIITDYCMPGMTGF 91 Query: 502 GLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 LL K+ S K +PV+++S + + + KCL+ GA F+ KP++ ++++ L H+ Sbjct: 92 ELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLSDVEKLKCHL 148
>ARR6_ARATH (Q9ZWS6) Two-component response regulator ARR6| Length = 186 Score = 65.9 bits (159), Expect = 1e-10 Identities = 36/112 (32%), Positives = 65/112 (58%), Gaps = 9/112 (8%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLE-DVQNR--------IDLVLTEVAMPCLSGIG 500 R + LLR +V ++ A QYL DV+ + ++L++T+ +MP ++G Sbjct: 37 RKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVNLIMTDYSMPGMTGYE 96 Query: 499 LLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 LL KI S + +PV++MS + + + +CL +GA DFL+KP++ +++K L Sbjct: 97 LLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDVKRL 148
>ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Response reactor 2)| Length = 184 Score = 64.7 bits (156), Expect = 2e-10 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 10/113 (8%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLE-DVQN---------RIDLVLTEVAMPCLSGI 503 R + LLR +V ++ A QYL D +N +I+L++T+ +MP ++G Sbjct: 37 RKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLIMTDYSMPGMTGY 96 Query: 502 GLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 LL KI S + IPV++MS + + + +CL +GA DFL+KP++ ++K L Sbjct: 97 ELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLADVKRL 149
>ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR| Length = 443 Score = 63.5 bits (153), Expect = 5e-10 Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 3/108 (2%) Frame = -3 Query: 664 DDCTRH--VVRALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLL 494 DD H +++ALLR GY V A NGL A LE V+ ++ DLVL ++ M + GI L Sbjct: 12 DDDISHCTILQALLRGWGYRVALANNGLQA---LEKVREKVFDLVLCDIRMAEMDGIETL 68 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +I + + IPV++M+ S+ T + L GA+D+L+KP+ ++L+ Sbjct: 69 KEIKTFN--PSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQ 114
>CHEY_HELPY (P71403) Chemotaxis protein cheY homolog| Length = 124 Score = 62.8 bits (151), Expect = 9e-10 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ L + GYE V+ AE+G++AW+ L D +++T+ MP ++G+ L+ K+ S Sbjct: 13 RRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWNMPEMNGLDLVKKVRSD 71 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 S K IP+IM++ + V L G +++VKP LK Sbjct: 72 SRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>ARR9_ARATH (O80366) Two-component response regulator ARR9 (Response reactor 4)| Length = 234 Score = 62.0 bits (149), Expect = 2e-09 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 19/128 (14%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQN-------------------RIDLVLTE 530 R ++ LL+K +V + ++G A ++L Q+ ++L++T+ Sbjct: 21 RKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPVNHQVVEVNLIITD 80 Query: 529 VAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 MP ++G LL K+ S + IPV++MS + + + +CL +GA +F +KP+R +L Sbjct: 81 YCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKPVRLADLN 140 Query: 349 TLWQHIWR 326 L H+ + Sbjct: 141 KLKPHMMK 148
>ARR19_ARATH (Q9M9B9) Putative two-component response regulator ARR19| Length = 407 Score = 62.0 bits (149), Expect = 2e-09 Identities = 30/107 (28%), Positives = 61/107 (57%) Frame = -3 Query: 643 VRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICK 464 ++ ++++ Y+V + A +L ++ I++V+ + MP + G+ L ITS Sbjct: 49 MKQIMKQYAYQVSIETDAEKALAFLTSCKHEINIVIWDFHMPGIDGLQALKSITSKL--- 105 Query: 463 GIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV++MS ++ +V K GA D++VKP+++ + +WQHI R+ Sbjct: 106 DLPVVIMSDDNQTESVMKATFYGACDYVVKPVKEEVMANIWQHIVRK 152
>ARR16_ARATH (Q9SHC2) Two-component response regulator ARR16| Length = 164 Score = 60.8 bits (146), Expect = 3e-09 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 12/119 (10%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLE--DVQNRID----------LVLTEVAMPCLS 509 R +V LL+ +V +AEN L A +YL D ID L++T+ MP ++ Sbjct: 41 RKLVERLLKISCCKVTTAENALRALEYLGLGDQNQHIDALTCNVMKVSLIITDYCMPGMT 100 Query: 508 GIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 G LL K+ S + +PV++MS + + + KCL+ GA F+ KP++ +++ L H+ Sbjct: 101 GFELLKKVKESSNLREVPVVIMSSENIPTRINKCLASGAQMFMQKPLKLADVEKLKCHL 159
>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR| Length = 441 Score = 60.8 bits (146), Expect = 3e-09 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Frame = -3 Query: 664 DDCTRH--VVRALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLL 494 DD H +++ALLR GY V A +G A LE V+ R+ DLVL +V M + GI L Sbjct: 12 DDDISHCTILQALLRGWGYNVALANSGRQA---LEQVRERVFDLVLCDVRMAEMDGIATL 68 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +I + + IPV++M+ S+ T + L GA+D+L+KP+ + L+ Sbjct: 69 KEIKA--LNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
>CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog| Length = 124 Score = 60.5 bits (145), Expect = 5e-09 Identities = 32/102 (31%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ L + GYE V+ AE+G++AW+ L D +++T+ MP ++G+ L+ K+ + Sbjct: 13 RRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWNMPEMNGLDLVKKVRAD 71 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 + K IP+IM++ + V L G +++VKP LK Sbjct: 72 NRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>ARR8_ARATH (O80365) Two-component response regulator ARR8 (Response reactor 3)| Length = 225 Score = 60.1 bits (144), Expect = 6e-09 Identities = 33/128 (25%), Positives = 68/128 (53%), Gaps = 19/128 (14%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYL-------------------EDVQNRIDLVLTE 530 R ++ LL+K +V + ++G A ++L ++V+ I+L++T+ Sbjct: 21 RKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTSPQIHQEVE--INLIITD 78 Query: 529 VAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 MP ++G LL K+ + + IPV++MS + + + +CL +GA +F +KP++ +L Sbjct: 79 YCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKPVKLADLT 138 Query: 349 TLWQHIWR 326 L H+ + Sbjct: 139 KLKPHMMK 146
>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR| Length = 441 Score = 59.3 bits (142), Expect = 1e-08 Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Frame = -3 Query: 664 DDCTRH--VVRALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLL 494 DD H +++ALLR GY V A +G A LE V+ ++ DLVL +V M + GI L Sbjct: 12 DDDISHCTILQALLRGWGYNVALANSGRQA---LEQVREQVFDLVLCDVRMAEMDGIATL 68 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +I + + IPV++M+ S+ T + L GA+D+L+KP+ + L+ Sbjct: 69 KEIKA--LNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
>APRR8_ARATH (O23100) Putative two-component response regulator-like APRR8| (Pseudo-response regulator 8) Length = 367 Score = 58.2 bits (139), Expect = 2e-08 Identities = 36/99 (36%), Positives = 56/99 (56%) Frame = -3 Query: 634 LLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 ++RKCGY+V++ D + + +IDLVL E + ++ LL KI SIC+ IP Sbjct: 32 MIRKCGYKVVATTRADDLPLIINNKDKKIDLVLAEFRLIEMNKYELLEKI--RSICE-IP 88 Query: 454 VIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQ 338 V+ +S + +CL +GA L KP+ +N+ K LWQ Sbjct: 89 VV-VSGAHVKDAIVECLCRGAKLCLEKPLMENDFKILWQ 126
>ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR| Length = 441 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Frame = -3 Query: 664 DDCTRH--VVRALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLL 494 DD H +++ALLR GY V A +G DA L V+ ++ DLVL +V M + GI L Sbjct: 12 DDDVSHCTILQALLRGWGYNVALAYSGHDA---LAQVREKVFDLVLCDVRMAEMDGIATL 68 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +I + + IP+++M+ S+ T + L GA+D+L+KP+ + L+ Sbjct: 69 KEIKA--LNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQ 114
>ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR| Length = 441 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 3/108 (2%) Frame = -3 Query: 664 DDCTRH--VVRALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLL 494 DD H +++ALLR GY V A +G DA L V+ ++ DLVL +V M + GI L Sbjct: 12 DDDVSHCTILQALLRGWGYNVALAYSGHDA---LAQVREKVFDLVLCDVRMAEMDGIATL 68 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +I + + IP+++M+ S+ T + L GA+D+L+KP+ + L+ Sbjct: 69 KEIKA--LNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQ 114
>NTRC_AZOBR (P45671) Nitrogen assimilation regulatory protein| Length = 481 Score = 56.2 bits (134), Expect = 9e-08 Identities = 33/105 (31%), Positives = 57/105 (54%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L + G+EV + N W+++ D Q DL++T+V MP +G+ L+ + Sbjct: 11 DDRAIRTVLTQALARLGHEVRTTGNASTLWRWVADGQG--DLIITDVVMPDENGLDLIPR 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 I I + +I+MS +++ T K +GA ++L KP EL Sbjct: 69 IKK--IRPDLRIIVMSAQNTLITAVKAAERGAFEYLPKPFDLKEL 111
>NTRC_BRASR (P10576) Nitrogen assimilation regulatory protein| Length = 480 Score = 56.2 bits (134), Expect = 9e-08 Identities = 35/108 (32%), Positives = 55/108 (50%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L + GYEV N W+++ Q DLV+T+V MP + LL + Sbjct: 11 DDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVS--QGEGDLVITDVVMPDENAFDLLPR 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I + +PVI+MS ++ T + +GA ++L KP EL T+ Sbjct: 69 IKK--MRPNLPVIVMSAQNTFMTAIRPSERGAYEYLPKPFDLKELITI 114
>PILG_PSEAE (P46384) Protein pilG| Length = 135 Score = 55.5 bits (132), Expect = 1e-07 Identities = 34/100 (34%), Positives = 49/100 (49%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R LL+K G +VI+A +G DA + D I + ++ MP L G + I ++S Sbjct: 20 RRTAETLLKKVGCDVITAIDGFDALAKIADTHPNI--IFVDIMMPRLDGYQTCALIKNNS 77 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 K PVIM+S D + K G+ +L KP K EL Sbjct: 78 AFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEEL 117
>YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 249 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/110 (32%), Positives = 57/110 (51%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R +++ L GY V +A NG +A + + IDL++ +V MP L G G+ +I S Sbjct: 24 RKILQTRLTLLGYSVSTACNGEEALKIF--TTHSIDLIILDVMMPKLDGYGVCQEIRKES 81 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 IP+IM++ + + L GA D+++KP EL+ Q I RR Sbjct: 82 ---DIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128
>NTRC_RHIME (P10577) Nitrogen assimilation regulatory protein| Length = 484 Score = 54.7 bits (130), Expect = 2e-07 Identities = 34/105 (32%), Positives = 51/105 (48%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L + GY+V N W+++ DLV+T+V MP + LL + Sbjct: 11 DDAAIRTVLNQALSRAGYDVRITSNAATLWRWIAAGDG--DLVVTDVVMPDENAFDLLPR 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 I +PV++MS ++ T K KGA D+L KP EL Sbjct: 69 IKKAR--PDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTEL 111
>CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog| Length = 130 Score = 54.3 bits (129), Expect = 3e-07 Identities = 27/102 (26%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ L + G++ V+ AE+G++AW L ++ + +++T+ MP ++G+ L+ K+ + Sbjct: 13 RRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED-VKVLITDWNMPEMNGLELVKKVRAE 71 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 + +P+IM++ + V L G +++VKP LK Sbjct: 72 KKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>APRR4_ARATH (Q9FJ16) Putative two-component response regulator-like APRR4| (Pseudo-response regulator 4) Length = 292 Score = 53.9 bits (128), Expect = 4e-07 Identities = 32/103 (31%), Positives = 58/103 (56%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 L+K Y+V A L + +NR DL + +V LS+I S +P+ Sbjct: 61 LQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGDIFRFLSEIGSEM---DLPI 117 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 I++S++DS+ +V K + GA D+L+KPIR +L+ +++H+ ++ Sbjct: 118 IIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVKK 160
>GTCR_ANEMI (Q44929) Response regulator gtcR| Length = 242 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/97 (30%), Positives = 51/97 (52%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++ L + Y +I A +G AW Y+ Q+ +DL + ++ MP L G L+ ++T+ Sbjct: 17 LLKLFLERESYRIIEAYDGEQAWNYIR--QHPVDLAIIDIMMPALDGFQLIKRLTNE--- 71 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNE 356 +PVI++S + S L GA DF+ KP E Sbjct: 72 YKLPVIILSAKNRDSDKILGLGLGADDFISKPFNPLE 108
>PILH_PSEAE (P43501) Protein pilH| Length = 121 Score = 52.8 bits (125), Expect = 9e-07 Identities = 31/95 (32%), Positives = 51/95 (53%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGI 458 A+L K G++V+ AENG D Q + D+VL ++ MP L+G ++T + I Sbjct: 19 AMLEKHGHQVLKAENGGDGVALAR--QEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAI 76 Query: 457 PVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 PVI+++ D + +GA D+L KP+ + L Sbjct: 77 PVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETL 111
>PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 52.8 bits (125), Expect = 9e-07 Identities = 32/110 (29%), Positives = 51/110 (46%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GYE + AEN A + D + DL+L + +P SGI L ++ Sbjct: 16 REMIAVALEMAGYECLEAENTQQAHAVIVD--RKPDLILLDWMLPGTSGIELARRLKRDE 73 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + IP+IM++ + L GA D++ KP EL + + RR Sbjct: 74 LTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein atoC| (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) Length = 461 Score = 52.4 bits (124), Expect = 1e-06 Identities = 33/110 (30%), Positives = 54/110 (49%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R ++ G+E A NG A D+ D+VL ++ MP + GI L + Sbjct: 12 DEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP--DVVLMDIRMPEMDGIKALKE 69 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQ 338 + SH PVI+M+ + T + L GA D+++KP +EL + Q Sbjct: 70 MRSHET--RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQ 117
>YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 240 Score = 52.0 bits (123), Expect = 2e-06 Identities = 33/110 (30%), Positives = 57/110 (51%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GY+VISA +G +A + + +LV+ ++ MP L G G+ ++ S Sbjct: 16 RRILETRLSIIGYDVISAADGEEALSIFK--REHPNLVVLDLMMPKLDGYGVCQELRKES 73 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +P+IM++ +S L GA D++VKP EL+ + + RR Sbjct: 74 ---DVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120
>PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory protein phoB| Length = 231 Score = 50.4 bits (119), Expect = 5e-06 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Frame = -3 Query: 664 DDCT-RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 D+C R ++ L + Y+VI A + A + ++ L+L + +P SGI + Sbjct: 10 DECAIREMIALFLSQKYYDVIEASDFKTA---INKIKENPKLILLDWMLPGRSGIQFIQY 66 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 I IP+IM++ + CL+ GA D++ KP L + +WRR Sbjct: 67 IKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRR 121
>YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 239 Score = 50.4 bits (119), Expect = 5e-06 Identities = 33/110 (30%), Positives = 56/110 (50%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GYEV++A +G +A + +LV+ +V MP L G G+ ++ S Sbjct: 18 RRILETRLSMIGYEVVTAADGEEALTIFQ--LEHPNLVVLDVMMPKLDGYGVCQELRKES 75 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 IP+IM++ ++ L GA D++VKP EL+ + + RR Sbjct: 76 ---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122
>YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)| Length = 444 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/89 (29%), Positives = 52/89 (58%) Frame = -3 Query: 619 GYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS 440 GY V++AE+G + + L + ++DLV++++ M + G+ L ++I + G+PVI+++ Sbjct: 29 GYSVVTAESGAEGLRVLN--REKVDLVISDLRMDEMDGMQLFAEI--QKVQPGMPVIILT 84 Query: 439 KNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + S+ +G FL KP+ K+ L Sbjct: 85 AHGSIPDAVAATQQGVFSFLTKPVDKDAL 113
>YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA| Length = 444 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/89 (29%), Positives = 52/89 (58%) Frame = -3 Query: 619 GYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS 440 GY V++AE+G + + L + ++DLV++++ M + G+ L ++I + G+PVI+++ Sbjct: 29 GYSVVTAESGAEGLRVLN--REKVDLVISDLRMDEMDGMQLFAEI--QKVQPGMPVIILT 84 Query: 439 KNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + S+ +G FL KP+ K+ L Sbjct: 85 AHGSIPDAVAATQQGVFSFLTKPVDKDAL 113
>PHOP_SHIFL (Q83RR0) Virulence transcriptional regulatory protein phoP| Length = 223 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/110 (24%), Positives = 59/110 (53%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ ++ G++V AE+ +A YL + + D+ + ++ +P G+ L+ + S+ Sbjct: 13 RHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSND 70 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +P+++++ +S + LS GA D++ KP E+ Q + RR Sbjct: 71 V--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>PHOP_ECOL6 (Q8CXZ9) Transcriptional regulatory protein phoP| Length = 223 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/110 (24%), Positives = 59/110 (53%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ ++ G++V AE+ +A YL + + D+ + ++ +P G+ L+ + S+ Sbjct: 13 RHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSND 70 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +P+++++ +S + LS GA D++ KP E+ Q + RR Sbjct: 71 V--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>PHOP_ECO57 (Q8X738) Transcriptional regulatory protein phoP| Length = 223 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/110 (24%), Positives = 59/110 (53%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ ++ G++V AE+ +A YL + + D+ + ++ +P G+ L+ + S+ Sbjct: 13 RHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLICRWRSND 70 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +P+++++ +S + LS GA D++ KP E+ Q + RR Sbjct: 71 V--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 254 Score = 50.1 bits (118), Expect = 6e-06 Identities = 32/110 (29%), Positives = 55/110 (50%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GY V++A +G +A Q D+V+ ++ MP L G G+ +I S Sbjct: 27 RKILETRLSMIGYFVVTASDGEEALNLFH--QEMPDVVILDIMMPKLDGYGVCQEIRKDS 84 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +P+IM++ ++ L GA D++VKP EL+ + + RR Sbjct: 85 ---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131
>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2| (Pseudo-response regulator 2) (TOC2 protein) Length = 535 Score = 50.1 bits (118), Expect = 6e-06 Identities = 19/43 (44%), Positives = 31/43 (72%) Frame = -3 Query: 460 IPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 +P IM+S + ++T KC++ GAV+FL KP+ +LK +WQH+ Sbjct: 96 LPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQHV 138
>PHOP_ECOLI (P23836) Transcriptional regulatory protein phoP| Length = 223 Score = 49.7 bits (117), Expect = 8e-06 Identities = 27/110 (24%), Positives = 59/110 (53%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ ++ G++V AE+ +A YL + + D+ + ++ +P G+ L+ + S+ Sbjct: 13 RHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSND 70 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +P+++++ +S + LS GA D++ KP E+ Q + RR Sbjct: 71 V--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>YCF27_PORPU (P51358) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 243 Score = 49.7 bits (117), Expect = 8e-06 Identities = 34/110 (30%), Positives = 54/110 (49%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GYEVI+A NG +A + LV+ +V MP L G G+ ++ S Sbjct: 18 RRILETRLTIIGYEVITASNGEEALIIFR--KEYPSLVVLDVMMPKLDGYGVCQELRKES 75 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +P+IM++ + L GA D++VKP EL+ + + RR Sbjct: 76 ---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122
>CHEY_LISMO (P0A4H5) Chemotaxis protein cheY| Length = 119 Score = 49.3 bits (116), Expect = 1e-05 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 1/101 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ +++ +EV++ AENGL+A + ++V+ D+V ++ MP + G+ L++I + Sbjct: 14 RTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKP--DIVTLDITMPEMDGLEALAQIMAK 71 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 VIM S V + KGA DF+VKP + + + Sbjct: 72 D--PSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRV 110
>CHEY_LISIN (P0A4H6) Chemotaxis protein cheY| Length = 119 Score = 49.3 bits (116), Expect = 1e-05 Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 1/101 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ +++ +EV++ AENGL+A + ++V+ D+V ++ MP + G+ L++I + Sbjct: 14 RTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKP--DIVTLDITMPEMDGLEALAQIMAK 71 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 VIM S V + KGA DF+VKP + + + Sbjct: 72 D--PSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRV 110
>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)| Length = 777 Score = 49.3 bits (116), Expect = 1e-05 Identities = 32/88 (36%), Positives = 48/88 (54%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGI 458 AL++ G+ V A++G +A Y++ N DL+LT+V MP L G L ++ S I Sbjct: 676 ALVKALGHSVEEAQDGEEA--YVKVQNNTYDLILTDVQMPKLDGFSLARRLKSTPAVARI 733 Query: 457 PVIMMSKNDSMSTVFKCLSKGAVDFLVK 374 PVI++S S + L GA +LVK Sbjct: 734 PVIILSSLASPEDKRRGLDAGADAYLVK 761
>PHOP_SALTY (P14146) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/110 (25%), Positives = 58/110 (52%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ L+ G++V +AE+ +A YL + + D+ + ++ +P G+ L+ + S Sbjct: 14 RHHLKVQLQDSGHQVDAAEDAREADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSSD 71 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +PV++++ + + LS GA D++ KP E+ Q + RR Sbjct: 72 V--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>PHOP_SALTI (Q8Z7H2) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/110 (25%), Positives = 58/110 (52%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ L+ G++V +AE+ +A YL + + D+ + ++ +P G+ L+ + S Sbjct: 14 RHHLKVQLQDSGHQVDAAEDAREADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSSD 71 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +PV++++ + + LS GA D++ KP E+ Q + RR Sbjct: 72 V--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>PHOP_SALPA (Q5PMJ1) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/110 (25%), Positives = 58/110 (52%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ L+ G++V +AE+ +A YL + + D+ + ++ +P G+ L+ + S Sbjct: 14 RHHLKVQLQDSGHQVDAAEDAREADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSSD 71 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +PV++++ + + LS GA D++ KP E+ Q + RR Sbjct: 72 V--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP| Length = 231 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/105 (28%), Positives = 53/105 (50%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D+ ++ L + GYEV+ A++G A Q + D +DLV+ ++ MP +SGI Sbjct: 10 DDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVND---SLDLVILDIMMPGISGIETCQH 66 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 I S +P++ ++ S + L G D++ KP + EL Sbjct: 67 IRKSS---NVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEEL 108
>YCF29_PORPU (P51343) Probable transcriptional regulator ycf29| Length = 209 Score = 48.9 bits (115), Expect = 1e-05 Identities = 31/112 (27%), Positives = 53/112 (47%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ND ++ L G+ V A NGL+A+Q + + DL+++++ MP + G LL K Sbjct: 10 NDTVLSKAIQEYLIDQGFNVDIALNGLEAFQLAN--KYKFDLIISDIIMPIIDGYELLEK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 + IPVI ++ K + G +L KP EL +L +++ Sbjct: 68 LRKIDKLAKIPVIFLTAKGMTKDRIKGYNMGCYGYLSKPFDPEELVSLIKNL 119
>PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA| Length = 233 Score = 48.5 bits (114), Expect = 2e-05 Identities = 31/103 (30%), Positives = 55/103 (53%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 LR G+EV +A +G +A + +NR D ++ ++ MP L G+ +++ + ++ +PV Sbjct: 27 LRLSGFEVATAVDGAEALR--SATENRPDAIVLDINMPVLDGVSVVTAL--RAMDNDVPV 82 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 ++S S+ L GA D+LVKP EL + + RR Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA| Length = 233 Score = 48.5 bits (114), Expect = 2e-05 Identities = 31/103 (30%), Positives = 55/103 (53%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 LR G+EV +A +G +A + +NR D ++ ++ MP L G+ +++ + ++ +PV Sbjct: 27 LRLSGFEVATAVDGAEALR--SATENRPDAIVLDINMPVLDGVSVVTAL--RAMDNDVPV 82 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 ++S S+ L GA D+LVKP EL + + RR Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 255 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/115 (28%), Positives = 57/115 (49%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++ R ++ L GYEV++A +G A + +LV+ +V MP + G G+ + Sbjct: 15 DESSIRRILETRLSIIGYEVLTAPDGRSALFLFH--KEHPNLVVLDVMMPKIDGYGVCQE 72 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 I S IP+IM++ ++ L GA D++VKP EL+ + + RR Sbjct: 73 IRKES---DIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124
>SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/115 (24%), Positives = 59/115 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R +++ L + +E+ A NG +A++ ++N +L ++ +P + GI + +K Sbjct: 10 DEDRIRRLLKMYLERESFEIHEASNGQEAYELA--MENNYACILLDLMLPEMDGIQVATK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H K P+IM++ + + GA D++VKP E+ + + RR Sbjct: 68 LREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/115 (24%), Positives = 59/115 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R +++ L + +E+ A NG +A++ ++N +L ++ +P + GI + +K Sbjct: 10 DEDRIRRLLKMYLERESFEIHEASNGQEAYELA--MENNYACILLDLMLPEMDGIQVATK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H K P+IM++ + + GA D++VKP E+ + + RR Sbjct: 68 LREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/115 (24%), Positives = 59/115 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R +++ L + +E+ A NG +A++ ++N +L ++ +P + GI + +K Sbjct: 10 DEDRIRRLLKMYLERESFEIHEASNGQEAYELA--MENNYACILLDLMLPEMDGIQVATK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H K P+IM++ + + GA D++VKP E+ + + RR Sbjct: 68 LREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/115 (24%), Positives = 59/115 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R +++ L + +E+ A NG +A++ ++N +L ++ +P + GI + +K Sbjct: 10 DEDRIRRLLKMYLERESFEIHEASNGQEAYELA--MENNYACILLDLMLPEMDGIQVATK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H K P+IM++ + + GA D++VKP E+ + + RR Sbjct: 68 LREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/115 (24%), Positives = 59/115 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R +++ L + +E+ A NG +A++ ++N +L ++ +P + GI + +K Sbjct: 10 DEDRIRRLLKMYLERESFEIHEASNGQEAYELA--MENNYACILLDLMLPEMDGIQVATK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H K P+IM++ + + GA D++VKP E+ + + RR Sbjct: 68 LREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/115 (24%), Positives = 59/115 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R +++ L + +E+ A NG +A++ ++N +L ++ +P + GI + +K Sbjct: 10 DEDRIRRLLKMYLERESFEIHEASNGQEAYELA--MENNYACILLDLMLPEMDGIQVATK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H K P+IM++ + + GA D++VKP E+ + + RR Sbjct: 68 LREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/115 (24%), Positives = 59/115 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 ++D R +++ L + +E+ A NG +A++ ++N +L ++ +P + GI + +K Sbjct: 10 DEDRIRRLLKMYLERESFEIHEASNGQEAYELA--MENNYACILLDLMLPEMDGIQVATK 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + H K P+IM++ + + GA D++VKP E+ + + RR Sbjct: 68 LREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>PHOP_SALCH (Q57QC3) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/110 (25%), Positives = 57/110 (51%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RH ++ L+ G++V + E+ +A YL + + D+ + ++ +P G+ L+ + S Sbjct: 14 RHHLKVQLQDSGHQVDATEDAREADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSSD 71 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 I +PV++++ + + LS GA D++ KP E+ Q + RR Sbjct: 72 I--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>CHEY_SALTY (P0A2D5) Chemotaxis protein cheY| Length = 128 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L+ ++++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIISDWNMPNMDGLELLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 S +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 SAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_SALTI (P0A2D6) Chemotaxis protein cheY| Length = 128 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L+ ++++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFIISDWNMPNMDGLELLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 S +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 SAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY| Length = 128 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L D V+++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFHNVEEAEDGVDALNKLR--AGGFDFVVSDWNMPNMDGLDLLKTIRTD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 GALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY| Length = 128 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+GLDA L+ V+++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGLDALNKLQ--AGGYGFVISDWNMPNMDGLELLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 GAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_BACSU (P24072) Chemotaxis protein cheY homolog| Length = 119 Score = 47.4 bits (111), Expect = 4e-05 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 1/101 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ +L K G+EV++ AENG A + ++ + DLV ++ MP + GI L +I Sbjct: 14 RMMIKDILVKNGFEVVAEAENGAQAVEKYKE--HSPDLVTMDITMPEMDGITALKEIKQ- 70 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 I +IM S S V + GA DF+VKP + + + Sbjct: 71 -IDAQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRV 110
>CHEY_YEREN (Q93P00) Chemotaxis protein cheY| Length = 128 Score = 47.4 bits (111), Expect = 4e-05 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L D V+++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLRT--GGFDFVVSDWNMPNMDGLDLLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 GALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEB_HALMA (Q5V0B3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 369 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 3/97 (3%) Frame = -3 Query: 652 RHVVRALLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R V+ +L G +V++ A +G +A + +++R D+V +V MP ++GI +I + Sbjct: 17 RSVISDILSDGGIDVVAQARDGEEAVSAV--IEHRPDVVTMDVEMPVMNGIEATERIMAE 74 Query: 475 SICKGIPVIMMSKN--DSMSTVFKCLSKGAVDFLVKP 371 S PV+M+S + ++ F+ L KGAVDF KP Sbjct: 75 S---PTPVLMLSAHTDENADVTFEALDKGAVDFFTKP 108
>LUXO_VIBPA (Q87MX7) Regulatory protein luxO| Length = 453 Score = 47.0 bits (110), Expect = 5e-05 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Frame = -3 Query: 640 RALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLLSKIT-SHSIC 467 R+ L G ++ G DA +E + +RI DL+L ++ +P ++G+ +L + SH Sbjct: 13 RSYLTPLGIDINIVGTGRDA---IESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSHP-- 67 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +P+I M+ + S+ T + + G+ DFL+KP + L+ Sbjct: 68 -DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLR 105
>LUXO_VIBHA (P54299) Luminescence regulatory protein luxO| Length = 453 Score = 47.0 bits (110), Expect = 5e-05 Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Frame = -3 Query: 640 RALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLLSKIT-SHSIC 467 R+ L G ++ G DA +E + +RI DL+L ++ +P ++G+ +L + SH Sbjct: 13 RSYLTPLGIDINIVGTGRDA---IESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSHP-- 67 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +P+I M+ + S+ T + + G+ DFL+KP + L+ Sbjct: 68 -DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLR 105
>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 47.0 bits (110), Expect = 5e-05 Identities = 31/101 (30%), Positives = 51/101 (50%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GY+ +A +G+DA L +N ID+VL++V MP + G L +I Sbjct: 837 RRLLADQLGSLGYQCKTANDGVDALNVLS--KNAIDIVLSDVNMPNMDGYRLTQRIRQLG 894 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 + +PV+ ++ N +CL G L KP+ + LK Sbjct: 895 LT--LPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALK 933
>CHEY_PSEAE (Q51455) Chemotaxis protein cheY| Length = 124 Score = 46.6 bits (109), Expect = 7e-05 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGY-EVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ LLR G+ A++G A L D ++T+ MP ++GI LL + + Sbjct: 13 RRIIKNLLRDLGFTNTAEADDGTTALPMLHS--GNFDFLVTDWNMPGMTGIDLLRAVRAD 70 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 K +PV+M++ + + G ++VKP LK + I+ R Sbjct: 71 ERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121
>LUXO_VIBVY (Q7MM78) Regulatory protein luxO| Length = 453 Score = 46.6 bits (109), Expect = 7e-05 Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Frame = -3 Query: 640 RALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLLSKI-TSHSIC 467 R+ L G ++ G DA ++ +++RI DL+L ++ +P ++G+ +L + SH Sbjct: 13 RSYLMPLGIDINIVGTGRDA---IDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP-- 67 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +P+I M+ + S+ T + + G+ DFL+KP + L+ Sbjct: 68 -DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLR 105
>LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO| Length = 453 Score = 46.6 bits (109), Expect = 7e-05 Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Frame = -3 Query: 640 RALLRKCGYEVISAENGLDAWQYLEDVQNRI-DLVLTEVAMPCLSGIGLLSKI-TSHSIC 467 R+ L G ++ G DA ++ +++RI DL+L ++ +P ++G+ +L + SH Sbjct: 13 RSYLMPLGIDINIVGTGRDA---IDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP-- 67 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +P+I M+ + S+ T + + G+ DFL+KP + L+ Sbjct: 68 -DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLR 105
>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 46.6 bits (109), Expect = 7e-05 Identities = 31/101 (30%), Positives = 51/101 (50%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GY+ +A +G+DA L +N ID+VL++V MP + G L +I Sbjct: 837 RRLLADQLGSLGYQCKTANDGVDALNVLS--KNAIDIVLSDVNMPNMDGYRLTQRIRQLG 894 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 + +PV+ ++ N +CL G L KP+ + LK Sbjct: 895 LT--LPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLK 933
>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 949 Score = 46.6 bits (109), Expect = 7e-05 Identities = 31/101 (30%), Positives = 51/101 (50%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L GY+ +A +G+DA L +N ID+VL++V MP + G L +I Sbjct: 837 RRLLADQLGSLGYQCKTANDGVDALNVLS--KNHIDIVLSDVNMPNMDGYRLTQRIRQLG 894 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 + +PVI ++ N +CL G L KP+ + +K Sbjct: 895 LT--LPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIK 933
>YYCF_BACSU (P37478) Transcriptional regulatory protein yycF| Length = 235 Score = 46.6 bits (109), Expect = 7e-05 Identities = 30/93 (32%), Positives = 50/93 (53%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 LRK GYEV A +G +A + +E++Q DL+L ++ +P G+ + ++ +P+ Sbjct: 22 LRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDGVEVCREVRKKY---DMPI 76 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 IM++ DS L GA D++ KP EL Sbjct: 77 IMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (Response| regulator sokA) Length = 231 Score = 46.6 bits (109), Expect = 7e-05 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISA---ENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGL 497 +D T + +L+ G+ V + E G+D + + DL+L ++ +P +SGI + Sbjct: 8 DDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYD-----YDLILLDLNLPDMSGIDV 62 Query: 496 LSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 L + I P++++S + + T K + GA D++ KP K+E+ Sbjct: 63 LRTLRVAKI--NTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEM 108
>CHEY_SHIFL (P0AE69) Chemotaxis protein cheY| Length = 128 Score = 46.6 bits (109), Expect = 7e-05 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L+ V+++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNMDGLELLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 GAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECOLI (P0AE67) Chemotaxis protein cheY| Length = 128 Score = 46.6 bits (109), Expect = 7e-05 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L+ V+++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNMDGLELLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 GAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECO57 (P0AE68) Chemotaxis protein cheY| Length = 128 Score = 46.6 bits (109), Expect = 7e-05 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L+ V+++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWNMPNMDGLELLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PV+M++ + GA ++VKP L+ I+ + Sbjct: 75 GAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>PHOP_BACSU (P13792) Alkaline phosphatase synthesis transcriptional regulatory| protein phoP Length = 240 Score = 46.6 bits (109), Expect = 7e-05 Identities = 29/103 (28%), Positives = 52/103 (50%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 L + GY+VI+A +G +A + E + DL++ +V +P L GI + ++ + P+ Sbjct: 22 LERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQKLM--FPI 77 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +M++ D L GA D++ KP E+ + I RR Sbjct: 78 LMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>HNR_SHIFL (P0AEV3) Protein hnr| Length = 337 Score = 45.4 bits (106), Expect = 2e-04 Identities = 27/96 (28%), Positives = 52/96 (54%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ + G + A +G+DA + L DL++ ++AMP ++G+ LL I + Sbjct: 20 RSLLDSWFSSLGATTVLAADGVDALELLGGFTP--DLMICDIAMPRMNGLKLLEHIRNRG 77 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIR 365 PV+++S ++M+ + K L G D L+KP++ Sbjct: 78 --DQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECOLI (P0AEV1) Protein hnr| Length = 337 Score = 45.4 bits (106), Expect = 2e-04 Identities = 27/96 (28%), Positives = 52/96 (54%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ + G + A +G+DA + L DL++ ++AMP ++G+ LL I + Sbjct: 20 RSLLDSWFSSLGATTVLAADGVDALELLGGFTP--DLMICDIAMPRMNGLKLLEHIRNRG 77 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIR 365 PV+++S ++M+ + K L G D L+KP++ Sbjct: 78 --DQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECO57 (P0AEV2) Protein hnr| Length = 337 Score = 45.4 bits (106), Expect = 2e-04 Identities = 27/96 (28%), Positives = 52/96 (54%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ + G + A +G+DA + L DL++ ++AMP ++G+ LL I + Sbjct: 20 RSLLDSWFSSLGATTVLAADGVDALELLGGFTP--DLMICDIAMPRMNGLKLLEHIRNRG 77 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIR 365 PV+++S ++M+ + K L G D L+KP++ Sbjct: 78 --DQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>MALR_BACSU (O05251) Transcriptional regulatory protein malR (Malate response| regulator) Length = 235 Score = 45.4 bits (106), Expect = 2e-04 Identities = 22/71 (30%), Positives = 43/71 (60%) Frame = -3 Query: 559 QNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFL 380 ++ IDL+L ++ MP +G+ LL+++ + + + + VI++S + + K L GAVD+L Sbjct: 45 EHHIDLILLDIYMPGKNGLELLTELRAQN--EAVDVIVISAASELDVIKKTLRYGAVDYL 102 Query: 379 VKPIRKNELKT 347 +KP +T Sbjct: 103 IKPFEFERFQT 113
>AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1| Length = 225 Score = 45.4 bits (106), Expect = 2e-04 Identities = 30/115 (26%), Positives = 57/115 (49%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +DD R + L + G+ V +A +G D + L + R DL++ +V +P + G + + Sbjct: 9 DDDAIRTALELSLTRQGHRVATAASGEDGLKLLRE--QRPDLIVLDVMLPGIDGFEVCRR 66 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 I +P+I+++ + V L GA D++VKP++ L + + RR Sbjct: 67 IRRTD---QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>ARCA_HAEIN (P44918) Aerobic respiration control protein arcA homolog| Length = 236 Score = 45.4 bits (106), Expect = 2e-04 Identities = 28/101 (27%), Positives = 51/101 (50%) Frame = -3 Query: 655 TRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 TR+ ++ + GY+V AENG++ L + I+LV+ ++ +P +G+ L ++ Sbjct: 15 TRNTLKGIFEAEGYDVFEAENGVEMHHIL--ANHNINLVVMDINLPGKNGLLLARELREE 72 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 +P+I ++ D+ L GA D+L KP EL Sbjct: 73 ---LSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPREL 110
>CPXR_SHIFL (P0AE90) Transcriptional regulatory protein cpxR| Length = 232 Score = 45.4 bits (106), Expect = 2e-04 Identities = 37/108 (34%), Positives = 51/108 (47%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++ LL G+ VI A +G A L+D IDL+L +V MP +GI L + Sbjct: 16 LLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKALRQ---T 69 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 PVIM++ S L GA D+L KP EL + I RR Sbjct: 70 HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
>CPXR_ECOLI (P0AE88) Transcriptional regulatory protein cpxR| Length = 232 Score = 45.4 bits (106), Expect = 2e-04 Identities = 37/108 (34%), Positives = 51/108 (47%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++ LL G+ VI A +G A L+D IDL+L +V MP +GI L + Sbjct: 16 LLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKALRQ---T 69 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 PVIM++ S L GA D+L KP EL + I RR Sbjct: 70 HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
>CPXR_ECO57 (P0AE89) Transcriptional regulatory protein cpxR| Length = 232 Score = 45.4 bits (106), Expect = 2e-04 Identities = 37/108 (34%), Positives = 51/108 (47%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++ LL G+ VI A +G A L+D IDL+L +V MP +GI L + Sbjct: 16 LLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKALRQ---T 69 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 PVIM++ S L GA D+L KP EL + I RR Sbjct: 70 HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
>PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA| Length = 233 Score = 45.4 bits (106), Expect = 2e-04 Identities = 30/103 (29%), Positives = 54/103 (52%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 LR G+EV +A +G +A + + R D ++ ++ MP L G+ +++ + ++ +PV Sbjct: 27 LRLSGFEVSTAIDGAEALR--NATETRPDAIVLDINMPVLDGVSVVTAL--RAMDNDVPV 82 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 ++S S+ L GA D+LVKP EL + + RR Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>COPR_PSESM (Q02540) Transcriptional activator protein copR| Length = 227 Score = 45.1 bits (105), Expect = 2e-04 Identities = 30/103 (29%), Positives = 52/103 (50%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 LR+ G+ V G DA + + DL++ +V MP L G ++ ++ + + +PV Sbjct: 20 LREAGFNVDRVVTGTDAVD--QALNEAYDLLILDVMMPGLDGWEVIRRLRTAG--QPVPV 75 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + ++ D + K L GA D+LVKP +EL + + RR Sbjct: 76 LFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118
>CITT_BACHD (Q9RC52) Transcriptional regulatory protein citT| Length = 230 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Frame = -3 Query: 616 YEVISA-ENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS 440 + VIS G +A YL + +DL+L +V +P + G+ LL I + + ++M++ Sbjct: 30 FHVISTCRTGGEALDYLSEKAAALDLILLDVYIPDVKGLELLWAIREKF--RDVDIMMVT 87 Query: 439 KNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + TV + L G +D+L+KP++K L Sbjct: 88 AAKEVDTVQEALRGGIIDYLLKPVQKEVL 116
>RPFG_XANC8 (Q4UU85) Response regulator rpfG| Length = 378 Score = 45.1 bits (105), Expect = 2e-04 Identities = 30/101 (29%), Positives = 50/101 (49%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 RHV+ + + +V + LDA + E R+DL+L + MP + G+ ++ Sbjct: 44 RHVIEDIAPEL--KVYDFGDPLDALSWCE--AGRVDLLLLDYRMPGMDGLEFARRLRRLP 99 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 + IP+I+++ L G +DFLVKPIR EL+ Sbjct: 100 SHRDIPIILITIVGDEPIRQAALEAGVIDFLVKPIRPRELR 140
>CHEY_THEMA (Q56312) Chemotaxis protein cheY| Length = 120 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Frame = -3 Query: 652 RHVVRALLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +++ ++ K GYEV A NG +A + ++++ D+V ++ MP ++GI + +I Sbjct: 15 RMMLKDIITKAGYEVAGEATNGREAVEKYKELKP--DIVTMDITMPEMNGIDAIKEIMK- 71 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 I +I+ S + V + + GA DF+VKP + + + Sbjct: 72 -IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRV 111
>APRR6_ARATH (Q9C9F6) Putative two-component response regulator-like APRR6| (Pseudo-response regulator 6) Length = 663 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/105 (23%), Positives = 52/105 (49%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGI 458 ++L++ V+S + A +E + I L++ + MP + L+ + + K I Sbjct: 30 SMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHIDSHSFLNAL----LLKDI 85 Query: 457 PVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 P+I+++ L+K A L KPI +++K +WQH++ + Sbjct: 86 PLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSK 130
>CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY| Length = 128 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Frame = -3 Query: 652 RHVVRALLRKCGYE-VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R +VR LL++ G+ V AE+G+DA L+ V+++ MP + G+ LL I + Sbjct: 17 RRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGFGFVISDWNMPNMDGLELLKTIRAD 74 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 + +PV+M++ + GA ++VKP Sbjct: 75 AGMASMPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)| Length = 469 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/108 (26%), Positives = 50/108 (46%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L G + ENG + + L D++L+++ MP + G+ LL + Sbjct: 11 DDSSIRWVLERALAGAGLTCTTFENGAEVLEAL--ASKTPDVLLSDIRMPGMDGLALLKQ 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I +PVI+M+ + + +GA D+L KP +E L Sbjct: 69 IKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)| Length = 469 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/108 (26%), Positives = 50/108 (46%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L G + ENG + + L D++L+++ MP + G+ LL + Sbjct: 11 DDSSIRWVLERALAGAGLTCTTFENGAEVLEAL--ASKTPDVLLSDIRMPGMDGLALLKQ 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I +PVI+M+ + + +GA D+L KP +E L Sbjct: 69 IKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein silR| Length = 228 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/103 (29%), Positives = 54/103 (52%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 L + G+ V A+NGL + + DLV+ ++ +P ++G ++ + S KG+PV Sbjct: 20 LTEAGFVVDHADNGLTGYHLAMTAE--YDLVILDIMLPDVNGWDIIRMLRSAG--KGMPV 75 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 ++++ ++ K L GA D+LVKP EL + + RR Sbjct: 76 LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>DCTR_BACME (P39486) Probable C4-dicarboxylate response regulator dctR| Length = 228 Score = 44.7 bits (104), Expect = 3e-04 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 2/108 (1%) Frame = -3 Query: 667 NDDCTRHVVRALLRKC-GYEVISA-ENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLL 494 +D + V R + + G+ VI+A NGL+ Q ++ Q++ DL + ++ MP G+ L Sbjct: 13 DDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIK--QHQPDLTIIDMYMPSQDGLTTL 70 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 +I ++ VI ++ + TV K L GAVD+++KP + +K Sbjct: 71 QQIRANGY--KTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMK 116
>CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyrophosphate-lyase| 2) (Adenylyl cyclase 2) (AC2) Length = 352 Score = 44.7 bits (104), Expect = 3e-04 Identities = 31/99 (31%), Positives = 54/99 (54%) Frame = -3 Query: 619 GYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS 440 GYEV+ ++ +A + + VQ I VL+++ MP + G+ L ++ S + +PVI+++ Sbjct: 31 GYEVMCFQDPYEALEQVGKVQPAI--VLSDLDMPGIDGLELCWRL-KESPSRQVPVIILT 87 Query: 439 KNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 NDS + K L GA D++ K EL + + RR Sbjct: 88 ANDSEAERVKGLRAGADDYVNKSASMAELSARIESVMRR 126
>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/110 (27%), Positives = 53/110 (48%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R +V +L + G++ + AE+ A L + DL+L + +P SGI + + S Sbjct: 15 REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSGIQFIKHLKRES 72 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + IPV+M++ + L GA D++ KP EL + + RR Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/110 (27%), Positives = 53/110 (48%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R +V +L + G++ + AE+ A L + DL+L + +P SGI + + S Sbjct: 15 REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSGIQFIKHLKRES 72 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + IPV+M++ + L GA D++ KP EL + + RR Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/110 (27%), Positives = 53/110 (48%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R +V +L + G++ + AE+ A L + DL+L + +P SGI + + S Sbjct: 15 REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSGIQFIKHLKRES 72 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + IPV+M++ + L GA D++ KP EL + + RR Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/110 (27%), Positives = 53/110 (48%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R +V +L + G++ + AE+ A L + DL+L + +P SGI + + S Sbjct: 15 REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSGIQFIKHLKRES 72 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + IPV+M++ + L GA D++ KP EL + + RR Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>DLTR_STRA5 (P0A4I0) Transcriptional regulatory protein dltR| Length = 224 Score = 44.3 bits (103), Expect = 3e-04 Identities = 28/97 (28%), Positives = 48/97 (49%) Frame = -3 Query: 643 VRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICK 464 ++ALL GY V A +G D +Y+ + DLVL ++ +P SG+ +L ++ + Sbjct: 16 IQALLADKGYSVDLAFDGDDGLEYI--LTGLYDLVLLDIMLPKRSGLSVLKRVREAGL-- 71 Query: 463 GIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 P+I ++ L GA D++ KP +EL Sbjct: 72 ETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADEL 108
>DLTR_STRA3 (P0A4H9) Transcriptional regulatory protein dltR| Length = 224 Score = 44.3 bits (103), Expect = 3e-04 Identities = 28/97 (28%), Positives = 48/97 (49%) Frame = -3 Query: 643 VRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICK 464 ++ALL GY V A +G D +Y+ + DLVL ++ +P SG+ +L ++ + Sbjct: 16 IQALLADKGYSVDLAFDGDDGLEYI--LTGLYDLVLLDIMLPKRSGLSVLKRVREAGL-- 71 Query: 463 GIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 P+I ++ L GA D++ KP +EL Sbjct: 72 ETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADEL 108
>REGX3_MYCSM (Q9F868) Sensory transduction protein regX3| Length = 228 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/104 (30%), Positives = 52/104 (50%) Frame = -3 Query: 634 LLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 LLRK G+E +G A E ++ D+VL ++ +P +SG + ++ + S +P Sbjct: 20 LLRKEGFEATVVGDGPSALAEFE--RSGADIVLLDLMLPGMSGTDVCKQLRARS---SVP 74 Query: 454 VIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 VIM++ DS L GA D++ KP EL + + RR Sbjct: 75 VIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>CHEY_TREPA (P96126) Chemotaxis protein cheY| Length = 144 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Frame = -3 Query: 634 LLRKCGYEVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGI 458 +L GYEV +A +G+D + + + +DLV ++ MP + GI L KI K Sbjct: 43 ILTSEGYEVADTAVDGVDGVEKYKAMSPGVDLVTMDITMPKMDGITALEKILEFD--KNA 100 Query: 457 PVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 V+++S V K L GA +++VKP+ + ++ Sbjct: 101 KVVIISALGKEELVKKALLLGAKNYIVKPLDRKKV 135
>CHEB_THETN (Q8RAZ3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 367 Score = 43.9 bits (102), Expect = 4e-04 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 8/97 (8%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLED--------VQNRIDLVLTEVAMPCLSGIGLLSKIT 482 A +R+C +++ E ++ D V+ R D++ ++ MP + G+ L I Sbjct: 14 AFMRRCLKDILENEEDMEVIDTARDGNEAVKKAVELRPDVITLDINMPVMDGLTALQYIM 73 Query: 481 SHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 S + C + + +S +++T F+ L GAVDF+ KP Sbjct: 74 SLAPCPVVIISSLSTEGALTT-FEALELGAVDFVAKP 109
>CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR| Length = 227 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/103 (27%), Positives = 56/103 (54%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 L + G+ V A+NGL+ + + DL++ ++ +P ++G ++ + S + KG+P+ Sbjct: 20 LTEAGFVVDLADNGLNGYHLA--MTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPI 75 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 ++++ ++ K L GA D+LVKP EL + + RR Sbjct: 76 LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR| Length = 227 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/103 (27%), Positives = 56/103 (54%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 L + G+ V A+NGL+ + + DL++ ++ +P ++G ++ + S + KG+P+ Sbjct: 20 LTEAGFVVDLADNGLNGYHLA--MTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPI 75 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 ++++ ++ K L GA D+LVKP EL + + RR Sbjct: 76 LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR| Length = 227 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/103 (27%), Positives = 56/103 (54%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 L + G+ V A+NGL+ + + DL++ ++ +P ++G ++ + S + KG+P+ Sbjct: 20 LTEAGFVVDLADNGLNGYHLA--MTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPI 75 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 ++++ ++ K L GA D+LVKP EL + + RR Sbjct: 76 LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>PILR_PSEAE (Q00934) Type 4 fimbriae expression regulatory protein pilR| Length = 445 Score = 43.5 bits (101), Expect = 6e-04 Identities = 31/103 (30%), Positives = 49/103 (47%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ L + + SA N +A + L + DL LT++ +P SG+ L+ I Sbjct: 16 RELLEITLGRMKLDTRSARNVKEARELL--AREPFDLCLTDMRLPDGSGLDLVQYIQQRH 73 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 PV M++ S+ T + L GA DFL KP+ L+ L Sbjct: 74 --PQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLREL 114
>MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA| Length = 225 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/105 (25%), Positives = 54/105 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D ++ +LR G++ +G A + ++ R DLVL ++ +P ++GI + Sbjct: 10 DDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRV 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + + S G+P++M++ V L GA D+++KP + EL Sbjct: 68 LRADS---GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKEL 109
>MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA| Length = 225 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/105 (25%), Positives = 54/105 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D ++ +LR G++ +G A + ++ R DLVL ++ +P ++GI + Sbjct: 10 DDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRV 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + + S G+P++M++ V L GA D+++KP + EL Sbjct: 68 LRADS---GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKEL 109
>MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA| Length = 225 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/105 (25%), Positives = 54/105 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D ++ +LR G++ +G A + ++ R DLVL ++ +P ++GI + Sbjct: 10 DDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRV 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + + S G+P++M++ V L GA D+++KP + EL Sbjct: 68 LRADS---GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKEL 109
>MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA| Length = 225 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/105 (25%), Positives = 54/105 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D ++ +LR G++ +G A + ++ R DLVL ++ +P ++GI + Sbjct: 10 DDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRV 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + + S G+P++M++ V L GA D+++KP + EL Sbjct: 68 LRADS---GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKEL 109
>CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 364 Score = 43.1 bits (100), Expect = 7e-04 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Frame = -3 Query: 652 RHVVRALLRKC-GYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITS 479 R +V LLR+ G EVI A NG A + ++ DL+ ++ MP ++GI LL + Sbjct: 16 RKIVSDLLREIPGIEVIGVAHNGKIALDKIR--LSKPDLITLDIEMPVMNGIELLEHLKD 73 Query: 478 HSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRK 362 G ++ +D K L GA DF++KP K Sbjct: 74 IPDAPGAVMLSTLTSDGSRMTMKALELGAFDFILKPQEK 112
>SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitivity protein| POS9) Length = 622 Score = 43.1 bits (100), Expect = 7e-04 Identities = 32/96 (33%), Positives = 45/96 (46%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 LRK G V +GL A LE + R DLVL ++ MP L G S + S P+ Sbjct: 396 LRKYGCTVQVVSDGLSAISTLE--KYRYDLVLMDIVMPNLDGATATSIVRSFD--NETPI 451 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I M+ N + L G D L KP +++L ++ Sbjct: 452 IAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSI 487
>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 43.1 bits (100), Expect = 7e-04 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 5/103 (4%) Frame = -3 Query: 661 DCTRHVVRALLRKCGYEVI---SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLS 491 + R V++ LL K G++V+ AE LDA + D V+ ++ MP ++G+ +L Sbjct: 422 EANRMVLQRLLEKAGHKVLCVNGAEQVLDAM-----AEEDYDAVIVDLHMPGMNGLDMLK 476 Query: 490 --KITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 ++ S + PV+++S + + + C GA FL KP+ Sbjct: 477 QLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 519
>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 43.1 bits (100), Expect = 7e-04 Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 5/103 (4%) Frame = -3 Query: 661 DCTRHVVRALLRKCGYEVI---SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLS 491 + R V++ LL K G++V+ AE LDA + D V+ ++ MP ++G+ +L Sbjct: 422 EANRMVLQRLLEKAGHKVLCVNGAEQVLDAM-----AEEDYDAVIVDLHMPGMNGLDMLK 476 Query: 490 --KITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 ++ S + PV+++S + + + C GA FL KP+ Sbjct: 477 QLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 519
>LUXO1_VIBCH (Q9KT84) Regulatory protein luxO| Length = 455 Score = 43.1 bits (100), Expect = 7e-04 Identities = 19/66 (28%), Positives = 39/66 (59%) Frame = -3 Query: 547 DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 DL+L ++ +P ++G+ +L + S +P++ M+ + S+ T + + GA DFL+KP Sbjct: 42 DLILLDLRLPDMTGMDVLYAVKEKS--PDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPC 99 Query: 367 RKNELK 350 + L+ Sbjct: 100 EADRLR 105
>NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)| Length = 469 Score = 43.1 bits (100), Expect = 7e-04 Identities = 29/108 (26%), Positives = 49/108 (45%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L G + ENG + L D++L+++ MP + G+ LL + Sbjct: 11 DDSSIRWVLERALAGAGLTCTTFENGNEVLAAL--ASKTPDVLLSDIRMPGMDGLALLKQ 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I +PVI+M+ + + +GA D+L KP +E L Sbjct: 69 IKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>NTRC_RHOCA (P09432) Nitrogen regulation protein ntrC| Length = 457 Score = 42.7 bits (99), Expect = 0.001 Identities = 27/99 (27%), Positives = 54/99 (54%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L + G +V + + + +++E+ + DLV+++V MP +G+ L++ Sbjct: 10 DDRTIRTVLTQALTRAGCKVHATASLMTLMRWVEEGKG--DLVISDVVMPDGNGLEALAR 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 I G+PVI++S +++ T + A D+L KP Sbjct: 68 IARER--PGLPVIVISAQNTIMTAIQAAEADAYDYLPKP 104
>RCAC_FREDI (Q01473) Protein rcaC| Length = 651 Score = 42.7 bits (99), Expect = 0.001 Identities = 29/115 (25%), Positives = 55/115 (47%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +DD V+ L Y V ++G W Y + DL++ ++ +P L GI L + Sbjct: 8 DDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFE--YDLIILDIMLPNLDGISLCKR 65 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +P+++++ D+++ + L GA D++VKP EL + + RR Sbjct: 66 FRAQGYT--VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR 118 Score = 38.9 bits (89), Expect = 0.014 Identities = 25/94 (26%), Positives = 47/94 (50%) Frame = -3 Query: 634 LLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 LL+ G++V + + W L+ V D ++ +V MP ++G L + S + +P Sbjct: 544 LLKPWGFKVTTLADPQQFWTVLQAVTP--DALVLDVNMPQINGFELCQLLRSDPHWQRLP 601 Query: 454 VIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 V+ +S +T + + G D+L KP++ EL Sbjct: 602 VLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVEL 635
>PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell| differentiation-controlling protein) [Includes: Diguanylate cyclase (EC 4.6.1.-) (DGC)] Length = 454 Score = 42.7 bits (99), Expect = 0.001 Identities = 26/83 (31%), Positives = 42/83 (50%) Frame = -3 Query: 616 YEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 YEV +A +G A ++ D++L +V MP + G + K+ + IPV++++ Sbjct: 27 YEVSTAMDGPTALAMA--ARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITA 84 Query: 436 NDSMSTVFKCLSKGAVDFLVKPI 368 D + L GA DFL KPI Sbjct: 85 LDGRGDRIQGLESGASDFLTKPI 107 Score = 34.7 bits (78), Expect = 0.27 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 +DLV+ A G+ + + S + +PV+ M D + K L G D L +P Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255 Query: 370 IRKNEL 353 I EL Sbjct: 256 IDPQEL 261
>RESD_BACSU (P35163) Transcriptional regulatory protein resD| Length = 240 Score = 42.7 bits (99), Expect = 0.001 Identities = 29/110 (26%), Positives = 52/110 (47%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++R L + Y + AENG +A + ++ DL+L ++ MP GI + +I Sbjct: 19 RRLLRMYLERENYAIDEAENGDEA--IAKGLEANYDLILLDLMMPGTDGIEVCRQIREK- 75 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 K P+IM++ + + G D++VKP E+ + + RR Sbjct: 76 --KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>CHEB1_LEPIN (Q8F6P9) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 357 Score = 42.7 bits (99), Expect = 0.001 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Frame = -3 Query: 610 VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS--K 437 V + + G+D + + D+++ +V MP + G+ L ++ + GIPVIM+S Sbjct: 34 VATGKTGMDCIDLAQKMNP--DVIILDVEMPVMDGLTALHELQKKKL--GIPVIMLSVLT 89 Query: 436 NDSMSTVFKCLSKGAVDFLVKP 371 + FK L GA+DF+ KP Sbjct: 90 QNGAEATFKALEYGAIDFVPKP 111
>CHEB1_LEPIC (P62641) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 357 Score = 42.7 bits (99), Expect = 0.001 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Frame = -3 Query: 610 VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS--K 437 V + + G+D + + D+++ +V MP + G+ L ++ + GIPVIM+S Sbjct: 34 VATGKTGMDCIDLAQKMNP--DVIILDVEMPVMDGLTALHELQKKKL--GIPVIMLSVLT 89 Query: 436 NDSMSTVFKCLSKGAVDFLVKP 371 + FK L GA+DF+ KP Sbjct: 90 QNGAEATFKALEYGAIDFVPKP 111
>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/110 (25%), Positives = 53/110 (48%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R +V +L + G++ + AE+ A L + DL+L + +P SG+ + + + Sbjct: 15 REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSGLQFIKLLKREA 72 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + IPV+M++ + L GA D++ KP EL + + RR Sbjct: 73 MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 858 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/98 (28%), Positives = 53/98 (54%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++A K +V A++GL+A ++L+D + DL+L + +P L GI +I + + Sbjct: 748 ILKAFCTKYKMQVDWAKDGLEAMEFLKD--HSYDLILMDNQLPHLGGIETTKEIRQN-LK 804 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 G P+ + + + T + GA L+KPI++N L Sbjct: 805 LGTPIYACTADTAQETSDAFMEAGANYVLLKPIKENAL 842
>YCBL_BACSU (P42244) Hypothetical sensory transduction protein ycbL| Length = 226 Score = 42.4 bits (98), Expect = 0.001 Identities = 32/105 (30%), Positives = 50/105 (47%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D +V L K G+ ++ A +G + + + Q DLVL ++ +P L+G+ L Sbjct: 5 DDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQ--QGSYDLVLLDIMLPKLNGMDFLKI 62 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 I S IPV+M+S D L GA D++ KP EL Sbjct: 63 IREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIEL 104
>Y2151_LEPIN (P24086) Hypothetical protein LA_2151 (ORF 2)| Length = 135 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Frame = -3 Query: 634 LLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGI 458 +L GY+VI AENG + + L D +DL+ ++ +P + G +I + I Sbjct: 30 ILESEGYQVIGFAENGKELVK-LYDEHRLVDLITLDLNLPVMDGYATFFEIKGKGVLPRI 88 Query: 457 PVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 +++S+ ++ + + + +GA+D++ KPI++ ++ Sbjct: 89 --VIVSEENTPAVLKNLIDEGAMDYIPKPIKREKI 121
>Y1769_LEPIC (Q72RH6) Hypothetical protein LIC_11769| Length = 135 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/95 (25%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Frame = -3 Query: 634 LLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGI 458 +L GY+VI AENG + + L D +DL+ ++ +P + G +I + I Sbjct: 30 ILESEGYQVIGFAENGKELVK-LYDEHRLVDLITLDLNLPVMDGYATFFEIKGKGVLPRI 88 Query: 457 PVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 +++S+ ++ + + + +GA+D++ KPI++ ++ Sbjct: 89 --VIVSEENTPAVLKNLIDEGAMDYIPKPIKREKI 121
>SPHR_SYNP7 (P39663) Alkaline phosphatase synthesis transcriptional regulatory| protein sphR Length = 257 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLED-------VQNRIDLVLTEVAMPCLSGIGLL 494 R +V +L++ G+ V A +G A Y V DLV+ ++ +P ++G+ Sbjct: 36 RDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLMLPAVNGLDFC 95 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + +P++M+S D+ + L GA D+L KP EL + + RR Sbjct: 96 RLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARCRALLRR 150
>REGX3_MYCTU (Q11156) Sensory transduction protein regX3| Length = 227 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/104 (29%), Positives = 51/104 (49%) Frame = -3 Query: 634 LLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 LLRK G+E +G A + + D+VL ++ +P +SG + ++ + S +P Sbjct: 20 LLRKEGFEATVVTDGPAALAEFD--RAGADIVLLDLMLPGMSGTDVCKQLRARS---SVP 74 Query: 454 VIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 VIM++ DS L GA D++ KP EL + + RR Sbjct: 75 VIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>REGX3_MYCBO (O07130) Sensory transduction protein regX3| Length = 227 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/104 (29%), Positives = 51/104 (49%) Frame = -3 Query: 634 LLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 LLRK G+E +G A + + D+VL ++ +P +SG + ++ + S +P Sbjct: 20 LLRKEGFEATVVTDGPAALAEFD--RAGADIVLLDLMLPGMSGTDVCKQLRARS---SVP 74 Query: 454 VIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 VIM++ DS L GA D++ KP EL + + RR Sbjct: 75 VIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>PATA_ANASP (P39048) Protein patA (PAT-1)| Length = 379 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Frame = -3 Query: 616 YEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 + VI + L A +E + + D++L V MP L G L S + HS K PVIM+++ Sbjct: 285 FAVIGVTDSLKA--LMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMVTE 342 Query: 436 NDSMSTVFKCLSKGAVDFLVKPIRKNE-LKTLWQHI 332 + + A L KP + + LK +++HI Sbjct: 343 KAGLVDRARAKIVRASGHLTKPFNQGDLLKVIFKHI 378
>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein| Length = 469 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/108 (25%), Positives = 49/108 (45%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ L G + E+G + L D++L+++ MP + G+ LL + Sbjct: 11 DDSSIRWVLERALTGAGLSCTTFESGNEVLDAL--TTKTPDVLLSDIRMPGMDGLALLKQ 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I +PVI+M+ + + +GA D+L KP +E L Sbjct: 69 IKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVAL 114
>CHEB_BACLD (Q65JK6) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 357 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Frame = -3 Query: 604 SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK--ND 431 +A NG +A Q ++++ R D++ ++ MP ++G L +I + +PV+M+S Sbjct: 32 TARNGEEALQKIKEL--RPDVITLDIEMPVMNGKETLKRIMASD---PLPVVMVSSLTQQ 86 Query: 430 SMSTVFKCLSKGAVDFLVKP 371 +CL GA+DF+ KP Sbjct: 87 GADITIECLELGAIDFVAKP 106
>SP0F_BACSU (P06628) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 124 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/101 (27%), Positives = 51/101 (50%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R ++ + K GY+ A NGL A + + R DLVL ++ +P + GI +L ++ Sbjct: 16 RILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDGIEILKRM--KV 71 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 I + I VI+M+ + + + GA+ KP +E++ Sbjct: 72 IDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIR 112
>LUXQ_VIBHA (P54302) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 859 Score = 41.2 bits (95), Expect = 0.003 Identities = 28/98 (28%), Positives = 52/98 (53%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++A +K +V A++GLDA + L D DL+L + +P L GI +I + + Sbjct: 749 ILQAFCKKYKMQVDWAKDGLDAMELLSDTT--YDLILMDNQLPHLGGIETTHEIRQN-LR 805 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 G P+ + + + T ++ GA ++KPI++N L Sbjct: 806 LGTPIYACTADTAKETSDAFMAAGANYVMLKPIKENAL 843
>RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB| Length = 219 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Frame = -3 Query: 571 LEDVQNRI-----DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKC 407 + D +N++ DL+L ++ +P G GL I + + IP+I+++ D + ++ Sbjct: 33 IADAENKLSSGGFDLMLLDLTLP--DGDGLQKLIAWRAAGQNIPIIILTARDRIESLVNS 90 Query: 406 LSKGAVDFLVKPIRKNELKTLWQHIWRR 323 L GA DFL KP EL + + + RR Sbjct: 91 LDSGANDFLAKPFALPELISRVKAVNRR 118
>YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ| Length = 227 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/85 (27%), Positives = 43/85 (50%) Frame = -3 Query: 625 KCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIM 446 K G+E +GL+ +Q + DL++ ++ +P + G+ + KI S +P+IM Sbjct: 22 KEGFEAEFVHDGLEGYQRF--TEENWDLIILDIMLPSMDGVTICRKIRETST---VPIIM 76 Query: 445 MSKNDSMSTVFKCLSKGAVDFLVKP 371 ++ D+ S GA D++ KP Sbjct: 77 LTAKDTESDQVIGFEMGADDYVTKP 101
>NODW_BRAJA (P15940) Nodulation protein W| Length = 227 Score = 41.2 bits (95), Expect = 0.003 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQY-LEDVQNRIDLVLTEVAMPCLSGIGLLS 491 +D R + L R G EV++ + + Q + DV + + L +V +P LSG+ + Sbjct: 27 DDISMRRSLTNLFRSVGLEVVAFGSAREMLQSTMPDVTSCLVL---DVRLPGLSGLDYQT 83 Query: 490 KITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 ++ +I IP+I ++ + + + + GAVDFL KP R EL Sbjct: 84 ELARLNI--HIPIIFITGHGDIPMTVRAMKGGAVDFLSKPFRDQEL 127
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)| Length = 1220 Score = 40.8 bits (94), Expect = 0.004 Identities = 27/107 (25%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Frame = -3 Query: 652 RHVVRALLRKCGYEVIS-AENGLDAWQYLEDVQNR---IDLVLTEVAMPCLSGIGLLSKI 485 + V++ +L G E I A +G +A+ ++++ ++ +++ +V MP + G+ L +K+ Sbjct: 1100 QEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGL-LSTKM 1158 Query: 484 TSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 + P++ ++ S + +CL G FL KPI++ +LKT+ Sbjct: 1159 IRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 1205
>CHEB_CLOAB (Q97GZ3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 345 Score = 40.8 bits (94), Expect = 0.004 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%) Frame = -3 Query: 613 EVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 EVI +A NG D L+ ++ D++ ++ MP ++GI L + S I IP+I+ S Sbjct: 30 EVIGTAINGQDLLNKLKVMKP--DVITLDIEMPVMNGIETLKAVKSLKI--DIPIIVFSS 85 Query: 436 --NDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 M +CL GA DF+ KP + EL + + +R Sbjct: 86 ISQKGMKYTMECLYLGAFDFIPKPEKPFELSKMKDDLIKR 125
>PGTA_SALTY (P06184) Phosphoglycerate transport system transcriptional| regulatory protein pgtA Length = 415 Score = 40.8 bits (94), Expect = 0.004 Identities = 28/104 (26%), Positives = 53/104 (50%) Frame = -3 Query: 634 LLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 +L + GY V + +A ++++ I VL++V MP SGI L++ H +P Sbjct: 24 MLEQAGYRVRGFTHPFEAKEWVKADWEGI--VLSDVCMPGCSGIDLMTLF--HQDDDQLP 79 Query: 454 VIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +++++ + + + KGA DFL KP+ +L L + R+ Sbjct: 80 ILLITGHGDVPMAVDAVKKGAWDFLQKPVDPGKLLILIEDALRQ 123
>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)| Length = 907 Score = 40.8 bits (94), Expect = 0.004 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +V+ LL G EV++ E G A ++ Q DLVL +V MP + G I + Sbjct: 671 LVQTLLEDMGAEVVAVEGGYAAVNAVQ--QEAFDLVLMDVQMPGMDGRQATEAIRAWEAE 728 Query: 466 KG---IPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + +P++ ++ + + L G D+L KPI + +L Sbjct: 729 RNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQL 769
>DCTR_BACSU (P96602) Probable C4-dicarboxylate response regulator dctR| Length = 226 Score = 40.8 bits (94), Expect = 0.004 Identities = 25/85 (29%), Positives = 45/85 (52%) Frame = -3 Query: 604 SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSM 425 +A NG + + +++ Q DLV+ +V MP GI L +I + + VI++S Sbjct: 36 TAGNGEEGMKLIKEEQP--DLVILDVYMPKKDGIKTLQEIRKQKL--EVDVIVVSAAKDK 91 Query: 424 STVFKCLSKGAVDFLVKPIRKNELK 350 T+ L GAVD+++KP + ++ Sbjct: 92 ETISLMLQNGAVDYILKPFKLERMR 116
>FIXJ_BRAJA (P23221) Transcriptional regulatory protein fixJ| Length = 205 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQN-RIDLVLTEVAMPCLSGIGLLS 491 +D R + LL G+ V + DA +L+ + V+++V MP L GI LL Sbjct: 12 DDAAMRDSLNFLLDSAGFGVTLFD---DAQAFLDALPGLSFGCVVSDVRMPGLDGIELLK 68 Query: 490 KITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 ++ + P+++M+ + + + + GAVDFL KP + L + Sbjct: 69 RMKAQQ--SPFPILIMTGHGDVPLAVEAMKLGAVDFLEKPFEDDRLTAM 115
>CHEB_TREDE (P62646) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 372 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = -3 Query: 601 AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK--NDS 428 A NG A Q LE V D+++ ++ MP ++GI L ++ +I IPV+++S + Sbjct: 35 AMNGRFALQKLERVAP--DVIVLDLEMPEMNGIEFLRELKKQNI--KIPVVILSSIAKEG 90 Query: 427 MSTVFKCLSKGAVDFLVKP 371 CL GA DF+ KP Sbjct: 91 AKVTMDCLELGACDFITKP 109
>YEDW_ECOLI (P76340) Probable transcriptional regulatory protein yedW| Length = 223 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/101 (28%), Positives = 52/101 (51%) Frame = -3 Query: 655 TRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 T+ V L + GY + + +G D YL +++ L++ ++ +P + G +L + + Sbjct: 12 TQEWVTQGLSEAGYVIDAVSDGRDGL-YLA-LKDDYALIILDIMLPGMDGWQILQTLRT- 68 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 K PVI ++ DS+ + L GA D+LVKP +EL Sbjct: 69 --AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSEL 107
>CHEB_METMP (P62647) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 365 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 3/83 (3%) Frame = -3 Query: 610 VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS--- 440 V +A++G +A++ ++ ++ + + +V MP ++GI +I ++ K P++M+S Sbjct: 32 VATAKDGKEAFELVKKLEPNV--ITMDVEMPIMNGIDATKQIMAY---KPTPILMLSAVT 86 Query: 439 KNDSMSTVFKCLSKGAVDFLVKP 371 K S +T+ K L GAVDF+ KP Sbjct: 87 KQGSEATL-KALDNGAVDFIEKP 108
>TCSA_EMENI (Q9P896) Two-component system protein A (EC 2.7.13.3)| Length = 719 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Frame = -3 Query: 664 DDCTRHV--VRALLRKCGYEVIS-AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLL 494 D+ H V A + G++ I A NG +A + + D++L +V+MP L G+ Sbjct: 566 DNIVNHTRYVEAPTYQFGFQRIDGAWNGAEAVRMVRQKPLSYDIILMDVSMPVLDGLAAT 625 Query: 493 SKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNE-LKTLWQHIWR 326 +I + +P+I ++ N +++G D + KP+ +++ L+ LW+ R Sbjct: 626 EQIRDMGLT--MPIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLLRVLWKWFGR 680
>PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory protein phoB| Length = 227 Score = 40.4 bits (93), Expect = 0.005 Identities = 30/108 (27%), Positives = 55/108 (50%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++R L G+EV + G +A L++ DL++ + +P +SGI L ++ Sbjct: 17 LLRYNLEAEGFEVDTILRGDEAEIRLQE--RLPDLLILDWMLPGVSGIELCRRLRQRPET 74 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +P+IM++ S + L+ GA D++VKP EL + + RR Sbjct: 75 ERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122
>UHPA_SHIFL (P0AGA9) Transcriptional regulatory protein uhpA| Length = 196 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/66 (34%), Positives = 40/66 (60%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 + + + +++MP +SG+ LLS++ KG+ IM+S +DS + V + L+ GA FL K Sbjct: 48 VQVCICDISMPDISGLELLSQLP-----KGMATIMLSVHDSPALVEQALNAGARGFLSKR 102 Query: 370 IRKNEL 353 +EL Sbjct: 103 CSPDEL 108
>UHPA_ECOLI (P0AGA6) Transcriptional regulatory protein uhpA| Length = 196 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/66 (34%), Positives = 40/66 (60%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 + + + +++MP +SG+ LLS++ KG+ IM+S +DS + V + L+ GA FL K Sbjct: 48 VQVCICDISMPDISGLELLSQLP-----KGMATIMLSVHDSPALVEQALNAGARGFLSKR 102 Query: 370 IRKNEL 353 +EL Sbjct: 103 CSPDEL 108
>UHPA_ECOL6 (P0AGA7) Transcriptional regulatory protein uhpA| Length = 196 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/66 (34%), Positives = 40/66 (60%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 + + + +++MP +SG+ LLS++ KG+ IM+S +DS + V + L+ GA FL K Sbjct: 48 VQVCICDISMPDISGLELLSQLP-----KGMATIMLSVHDSPALVEQALNAGARGFLSKR 102 Query: 370 IRKNEL 353 +EL Sbjct: 103 CSPDEL 108
>UHPA_ECO57 (P0AGA8) Transcriptional regulatory protein uhpA| Length = 196 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/66 (34%), Positives = 40/66 (60%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 + + + +++MP +SG+ LLS++ KG+ IM+S +DS + V + L+ GA FL K Sbjct: 48 VQVCICDISMPDISGLELLSQLP-----KGMATIMLSVHDSPALVEQALNAGARGFLSKR 102 Query: 370 IRKNEL 353 +EL Sbjct: 103 CSPDEL 108
>VANR_ENTFA (Q47744) Regulatory protein vanRB| Length = 220 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/115 (24%), Positives = 55/115 (47%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +DD + VRA L + YEV + +G +A + + +N LV+ ++ +P ++G LL + Sbjct: 10 DDDHICNTVRAFLAEARYEVDACTDGNEA--HTKFYENTYQLVILDIMLPGMNGHELLRE 67 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + P++MM+ + A D++ KP + L + + RR Sbjct: 68 FRAQN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR 119
>CHEB3_GEOSL (P62640) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 371 Score = 39.7 bits (91), Expect = 0.008 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -3 Query: 547 DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 DLV ++ MP + G LL + +S VI++S VF+ L GAVDF+ KP Sbjct: 51 DLVTLDLEMPRMDGFTLLRIVMEYS---PTAVIVISSRSEDEKVFRALELGAVDFVAKPT 107 Query: 367 R--KNELKTLWQHIWRR 323 + E+ T+ + + R+ Sbjct: 108 KGVSEEILTIREDLHRK 124
>CHEV_BACSU (P37599) Chemotaxis protein cheV| Length = 303 Score = 39.3 bits (90), Expect = 0.011 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 8/72 (11%) Frame = -3 Query: 631 LRKCGYE-VISAENGLDAWQYL-------EDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 L++ GY + S ENG +A++Y+ D+ +ID+++T++ MP + G L + + Sbjct: 194 LKEAGYNNIASFENGKEAYEYIMNLAENETDLSKQIDMIITDIEMPKMDGHRLTKLLKEN 253 Query: 475 SICKGIPVIMMS 440 +PV++ S Sbjct: 254 PKSSDVPVMIFS 265
>CHEB_ARCFU (O29221) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 39.3 bits (90), Expect = 0.011 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Frame = -3 Query: 652 RHVVRALLRKCGYEVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 R V +L K G EV+ +A+NG +A + + ++ + D++ ++ MP + G+ L I Sbjct: 13 RMAVTDILTKAGIEVVDTAKNGREAVE--KALKLKPDVITLDINMPEMDGLTALKLIMEK 70 Query: 475 SICKGIPVIMMSK--NDSMSTVFKCLSKGAVDFLVKP 371 + PV+M+S + + L GAVDF+ KP Sbjct: 71 ---QPTPVVMLSSLTKEGARETLEALKIGAVDFVTKP 104
>KDPE_ECOLI (P21866) KDP operon transcriptional regulatory protein kdpE| Length = 225 Score = 39.3 bits (90), Expect = 0.011 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAEN---GLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGL 497 ++ R +R L G V AE GL LE + DL++ ++ +P GI Sbjct: 9 DEQAIRRFLRTALEGDGMRVFEAETLQRGL-----LEAATRKPDLIILDLGLPDGDGIEF 63 Query: 496 LSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + S +PVI++S S L GA D+L KP EL+ + RR Sbjct: 64 IRDLRQWS---AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118
>NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)| Length = 473 Score = 39.3 bits (90), Expect = 0.011 Identities = 28/108 (25%), Positives = 50/108 (46%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R V+ + + G + E+ D + L Q D++L+++ MP + G+ LL Sbjct: 11 DDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQP--DVLLSDIRMPDMDGLSLLKI 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I +PVI+M+ + + +GA D+L KP +E L Sbjct: 69 IKEQY--PTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLAL 114
>QSEB_HAEIN (P45337) Transcriptional regulatory protein qseB| Length = 221 Score = 38.9 bits (89), Expect = 0.014 Identities = 22/75 (29%), Positives = 41/75 (54%) Frame = -3 Query: 547 DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 D V+ ++ +P L G+ +L + S+ + +PV++++ D++ K L GA D+L KP Sbjct: 46 DAVVLDLTLPKLDGLEVLQQWRSNH--QDVPVLILTARDTLDERVKGLQSGADDYLCKPF 103 Query: 367 RKNELKTLWQHIWRR 323 E+ Q + RR Sbjct: 104 ALAEVAARLQALIRR 118
>VANR_ENTFC (Q06239) Regulatory protein vanR| Length = 231 Score = 38.9 bits (89), Expect = 0.014 Identities = 26/98 (26%), Positives = 47/98 (47%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +V L+ Y V +A + ++ ++ IDL + ++ +P SG+ + KI Sbjct: 17 LVELYLKNENYTVFKYYTAKEALECID--KSEIDLAILDIMLPGTSGLTICQKIRDKHT- 73 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 P+IM++ D+ L+ GA D++ KP R EL Sbjct: 74 --YPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLEL 109
>YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG| Length = 228 Score = 38.9 bits (89), Expect = 0.014 Identities = 27/89 (30%), Positives = 41/89 (46%) Frame = -3 Query: 619 GYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS 440 GY V NG + + LVL +V +P LSG+ +L ++ PVI+++ Sbjct: 27 GYSVTIKHNGTEGLDAA--AEGGYSLVLLDVMLPGLSGLEVLRRLRKTD--SQTPVILLT 82 Query: 439 KNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 DS+ L GA D++ KP EL Sbjct: 83 ARDSIPDKVTGLDIGANDYVTKPFEIEEL 111
>CHEB_SYMTH (Q67P67) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 362 Score = 38.9 bits (89), Expect = 0.014 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Frame = -3 Query: 604 SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKN--D 431 +A +G D + + +Q D+V ++ MP L G G L +I + + PV+M+S + + Sbjct: 39 TARDGQDGLEKVLQLQP--DVVTLDIEMPRLDGYGTLREIMAR---RPTPVVMVSSHTRE 93 Query: 430 SMSTVFKCLSKGAVDFLVKP 371 + L+ GAVDF+ KP Sbjct: 94 GAEATIRALALGAVDFVAKP 113
>UHPA_SALTY (P27667) Transcriptional regulatory protein uhpA| Length = 196 Score = 38.5 bits (88), Expect = 0.018 Identities = 22/66 (33%), Positives = 40/66 (60%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 + + + +++MP +SG+ LLS++ KG+ I++S +DS + V + L+ GA FL K Sbjct: 48 VQVCICDISMPDISGLELLSQLP-----KGMATIVLSVHDSPALVEQALNAGARGFLSKR 102 Query: 370 IRKNEL 353 +EL Sbjct: 103 CSPDEL 108
>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR| Length = 226 Score = 38.5 bits (88), Expect = 0.018 Identities = 29/110 (26%), Positives = 54/110 (49%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R++ + L+ + GY+ NG D + + DL++ +V +P L G ++S + Sbjct: 15 RYLQQGLVEE-GYQADLFNNGRDGLGAAS--KGQYDLIILDVMLPFLDGWQIISALRESG 71 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + PV+ ++ D++ K L GA D+L+KP EL + + RR Sbjct: 72 HEE--PVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRR 119
>CZCR_RALME (Q44006) Transcriptional activator protein czcR| Length = 225 Score = 38.5 bits (88), Expect = 0.018 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPV 452 L + G+ V A NG D E+ D+++ +V +P + G ++ I S S PV Sbjct: 20 LSESGFVVDIANNGGDGLHMAEETD--YDVIILDVMLPGMDGWTVIKSIRSKS---ETPV 74 Query: 451 IMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + ++ D ++ + GA D+LVKP EL Sbjct: 75 LFLTALDDVADRVRGFELGADDYLVKPFAFAEL 107
>CHEB_TREPA (O83639) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 403 Score = 38.5 bits (88), Expect = 0.018 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = -3 Query: 601 AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK--NDS 428 A NG A LE VQ D++L ++ MP ++G+ L + I IPVI++S + Sbjct: 38 AMNGRFALDMLERVQP--DVILLDLEMPHMNGLQFLEQRKRLRI--DIPVIILSSIAKEG 93 Query: 427 MSTVFKCLSKGAVDFLVKP 371 +CL GA DF+ KP Sbjct: 94 ARVTMQCLELGASDFVTKP 112
>BCER_BACHD (Q9K621) Sensory transduction protein bceR| Length = 231 Score = 38.5 bits (88), Expect = 0.018 Identities = 23/75 (30%), Positives = 35/75 (46%) Frame = -3 Query: 547 DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 DLV+ ++ +P G I HS +P+I +S D + + + GA DF+ KP Sbjct: 47 DLVIIDIQLPKFDGFHWCRMIRQHS---NVPIIFLSSRDHPTDMVMSMQLGADDFIQKPF 103 Query: 367 RKNELKTLWQHIWRR 323 + L Q I RR Sbjct: 104 HFDVLVAKIQAILRR 118
>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1| protein) (SLN1 homolog) Length = 1070 Score = 38.5 bits (88), Expect = 0.018 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNR---IDLVLTEVAMPCLSGIGLLSKITSH 476 V+R L + Y+V ++G +A+ ++ DL+ ++ MP L GI +++ Sbjct: 948 VLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFMDIQMPNLDGIES-TRLIRQ 1006 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELK 350 C P++ +S S + C++ G F+ KPIR+ LK Sbjct: 1007 MGCSA-PIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPALK 1047
>CHEB_PYRHO (O58192) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 368 Score = 38.5 bits (88), Expect = 0.018 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 8/102 (7%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQN-RIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 L CG A +G++A +E VQ R D+V +V MP ++G+ L I +P Sbjct: 33 LEVCG----EARDGIEA---IEMVQKCRPDVVTLDVEMPRMNGLDALRVIMKRY---PVP 82 Query: 454 VIMMSK--NDSMSTVFKCLSKGAVDFLVKP-----IRKNELK 350 VIM+S + K L GA+DF+ KP I ELK Sbjct: 83 VIMISALTQEGADATIKALEYGAIDFIPKPSSSISINMKELK 124
>FIXJ_AZOCA (P26487) Transcriptional regulatory protein fixJ| Length = 211 Score = 38.5 bits (88), Expect = 0.018 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVI---SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGL 497 +DD R + LL G V SA LDA L+ ++T+V MP +SG+ L Sbjct: 12 DDDAVRESLAFLLESSGLAVTQHTSAAAFLDAGVPLDR-----GCIVTDVRMPGISGLEL 66 Query: 496 LSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 L ++ + + VI+M+ + + + + GA DFL KP Sbjct: 67 LKELNARGA--HMAVIVMTGHGDVPLAVEAMKLGAADFLEKP 106
>SP0A_BACSH (P42012) Stage 0 sporulation protein A| Length = 263 Score = 38.1 bits (87), Expect = 0.024 Identities = 23/86 (26%), Positives = 43/86 (50%) Frame = -3 Query: 610 VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKND 431 + +A NG Q LE+ D++L ++ MP L G+ +L + + I VIM++ Sbjct: 32 IATASNGKVCLQMLEEYTP--DILLLDIIMPHLDGLAVLEAMYQNDRMSSIQVIMLTAFG 89 Query: 430 SMSTVFKCLSKGAVDFLVKPIRKNEL 353 + + + GA F++KP ++L Sbjct: 90 QEDVMKQAVDLGASYFMLKPFEFDQL 115
>CHEB_PYRAB (Q9UYF3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 368 Score = 38.1 bits (87), Expect = 0.024 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 8/102 (7%) Frame = -3 Query: 631 LRKCGYEVISAENGLDAWQYLEDVQN-RIDLVLTEVAMPCLSGIGLLSKITSHSICKGIP 455 L CG A +G++A +E VQ R D+V +V MP ++G+ L I +P Sbjct: 33 LEVCG----EARDGIEA---IEMVQKCRPDVVTLDVEMPRMNGLDALRVIMKKY---PVP 82 Query: 454 VIMMSK--NDSMSTVFKCLSKGAVDFLVKP-----IRKNELK 350 VIM+S + K L GA+DF+ KP I ELK Sbjct: 83 VIMISALTQEGAEATIKALEYGAIDFIPKPSSSISINMRELK 124
>SP0A_CLOBE (P52936) Stage 0 sporulation protein A homolog (Fragment)| Length = 223 Score = 38.1 bits (87), Expect = 0.024 Identities = 22/77 (28%), Positives = 44/77 (57%) Frame = -3 Query: 601 AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMS 422 A++G +A + + V+ + DLV+ ++ MP L G+G+L K+ + + K +I++S Sbjct: 37 AKDGSEALELI--VERKPDLVILDIIMPHLDGLGVLEKLNTMQLEKVPRIIILSAVGQDK 94 Query: 421 TVFKCLSKGAVDFLVKP 371 + ++ GA + VKP Sbjct: 95 ITQQAITLGADYYTVKP 111
>BASR_ECOLI (P30843) Transcriptional regulatory protein basR/pmrA| Length = 222 Score = 38.1 bits (87), Expect = 0.024 Identities = 26/93 (27%), Positives = 45/93 (48%) Frame = -3 Query: 601 AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMS 422 AE L+A Y LV+ ++ +P G+ L++I +PV++++ D+++ Sbjct: 36 AEQSLEAGHY--------SLVVLDLGLPDEDGLHFLARIRQKKYT--LPVLILTARDTLT 85 Query: 421 TVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 L GA D+LVKP EL + + RR Sbjct: 86 DKIAGLDVGADDYLVKPFALEELHARIRALLRR 118
>Y4XI_RHISN (P55701) Probable transcriptional regulatory protein y4xI| Length = 226 Score = 38.1 bits (87), Expect = 0.024 Identities = 21/75 (28%), Positives = 39/75 (52%) Frame = -3 Query: 547 DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 +++L E+ +P G+ L ++ S +P ++MS+ D + + GA DFL KP+ Sbjct: 44 EILLLELVLPDGDGLDWLRQLRSDGY--SVPAVIMSRLDDLEKRISVFNSGADDFLRKPV 101 Query: 367 RKNELKTLWQHIWRR 323 +EL + + RR Sbjct: 102 STDELIARMRALLRR 116
>YPH5_THIVI (P45365) Hypothetical 76.5 kDa protein in phbC 3'region (ORF5)| Length = 692 Score = 37.7 bits (86), Expect = 0.031 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%) Frame = -3 Query: 643 VRALLRKCGYEVISAENGLDAWQYLEDVQN-RIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 + +LL G E + + D + L +Q R +LVL ++ +P +G L + I H Sbjct: 153 IASLLATIGMETLVVD---DPMKILARMQAFRPNLVLMDLYLPGATGSELTTIIRDHDDF 209 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 GIP++ +S+ + L G F+ KP+ + L Sbjct: 210 YGIPILFLSQEADLDKQLAALKAGGDGFIKKPVSREAL 247
>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 37.7 bits (86), Expect = 0.031 Identities = 27/98 (27%), Positives = 51/98 (52%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++A +K V ++G A + L++ + DL+L + +P + GI +I ++ Sbjct: 748 ILKAFCQKYQMSVEWVQDGTQALEKLKE--HAFDLILMDNQLPKMGGIEATREIRE-TLK 804 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 G P+ + + ST + LS GA +VKPI++ EL Sbjct: 805 LGTPIYACTADAQESTKQEFLSAGANRVIVKPIKEQEL 842
>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 37.7 bits (86), Expect = 0.031 Identities = 27/98 (27%), Positives = 51/98 (52%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 +++A +K V ++G A + L++ + DL+L + +P + GI +I ++ Sbjct: 748 ILKAFCQKYQMSVEWVQDGTQALEKLKE--HAFDLILMDNQLPKMGGIEATREIRE-TLK 804 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 G P+ + + ST + LS GA +VKPI++ EL Sbjct: 805 LGTPIYACTADAQESTKQEFLSAGANRVIVKPIKEQEL 842
>DCTD_RHIME (P13632) C4-dicarboxylate transport transcriptional regulatory| protein dctD Length = 460 Score = 37.7 bits (86), Expect = 0.031 Identities = 24/105 (22%), Positives = 51/105 (48%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R ++ L G+ V S + +A L + +V++++ MP + G+ L K Sbjct: 12 DDRDLRKAMQQTLELAGFTVSSFASATEALAGLS--ADFAGIVISDIRMPGMDGLALFRK 69 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 I + + +P+I+++ + + + + GA DF+ KP + L Sbjct: 70 ILA--LDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 112
>CHEB3_VIBCH (Q9KS59) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 358 Score = 37.7 bits (86), Expect = 0.031 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%) Frame = -3 Query: 613 EVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK- 437 E+ +A +G+DA + Q D++ ++ MP + G+ L++I + + +P++M+S Sbjct: 27 EIKTARDGMDAIDKVMKWQP--DVMTLDINMPNMDGLTCLTQIM---VERPLPIVMLSSL 81 Query: 436 -NDSMSTVFKCLSKGAVDFLVKP 371 ++ T + L GAVDF+ KP Sbjct: 82 THEGAITTLEALYLGAVDFVAKP 104
>FIXJ_RHIME (P10958) Transcriptional regulatory protein fixJ| Length = 204 Score = 37.7 bits (86), Expect = 0.031 Identities = 25/99 (25%), Positives = 51/99 (51%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +++ R + +L G+ V ++ + DV+N + ++T++ MP +SG+ LL Sbjct: 11 DEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGV--LVTDLRMPDMSGVELLRN 68 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 + I IP I+++ + + + + GAVDF+ KP Sbjct: 69 LGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A| Length = 264 Score = 37.4 bits (85), Expect = 0.041 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = -3 Query: 613 EVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 EVI +A NG + L D Q D+++ ++ MP L G+ +L K+ K VIM++ Sbjct: 30 EVIGTAYNGQECLNLLTDKQP--DVLVLDIIMPHLDGLAVLEKMRHIERLKQPSVIMLTA 87 Query: 436 NDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 K + GA F++KP +++ L HI Sbjct: 88 FGQEDVTKKAVDLGASYFILKPF---DMENLTSHI 119
>SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A| Length = 264 Score = 37.4 bits (85), Expect = 0.041 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = -3 Query: 613 EVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 EVI +A NG + L D Q D+++ ++ MP L G+ +L K+ K VIM++ Sbjct: 30 EVIGTAYNGQECLNLLTDKQP--DVLVLDIIMPHLDGLAVLEKMRHIERLKQPSVIMLTA 87 Query: 436 NDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 K + GA F++KP +++ L HI Sbjct: 88 FGQEDVTKKAVDLGASYFILKPF---DMENLTSHI 119
>ALGR_PSEAE (P26275) Positive alginate biosynthesis regulatory protein| Length = 248 Score = 37.4 bits (85), Expect = 0.041 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = -3 Query: 619 GYEVI--SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIM 446 GY V+ SA NG +A ++ ++ D+VL ++ MP L G+ + +++ VI Sbjct: 25 GYRVLEPSASNGEEALTLIDSLKP--DIVLLDIRMPGLDGLQVAARLCEREAPPA--VIF 80 Query: 445 MSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 + +D + + AV +LVKP+R +L Sbjct: 81 CTAHDEFA--LEAFQVSAVGYLVKPVRSEDL 109
>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR| Length = 305 Score = 37.4 bits (85), Expect = 0.041 Identities = 30/115 (26%), Positives = 50/115 (43%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D R + A R+ G+ V +G + + DLVL ++ +P L G+ LL Sbjct: 85 DDPRLREDLDAHFRRRGFRVTVCGDGSHGLEAAG--REAFDLVLLDIMLPGLDGLALLES 142 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + + PV++MS + ++GA D+L KP EL + RR Sbjct: 143 LRRE---QATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRR 194
>CHEB_OCEIH (Q8EQW0) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 352 Score = 37.4 bits (85), Expect = 0.041 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Frame = -3 Query: 610 VISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK-- 437 V A NG D + +Q D+V +V MP + G+ L +I + +PV+M+S Sbjct: 32 VAVARNGEDGLNKV--IQLSPDVVTLDVHMPKMDGMQALQRIMNEH---PVPVVMLSSVT 86 Query: 436 NDSMSTVFKCLSKGAVDFLVKP 371 + +S GAVDF++KP Sbjct: 87 KAGAEKTIQAISNGAVDFIMKP 108
>CHEB_THEMA (Q9WYN9) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 344 Score = 37.4 bits (85), Expect = 0.041 Identities = 23/77 (29%), Positives = 45/77 (58%) Frame = -3 Query: 601 AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMS 422 A++GL+A + + ++ + D++ ++ MP L+GI L I + + I V +++ + Sbjct: 37 AKDGLEAVE--KAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAI 94 Query: 421 TVFKCLSKGAVDFLVKP 371 T+ + L GAVDF+ KP Sbjct: 95 TI-EALRNGAVDFITKP 110
>CHVI_AGRTU (Q07783) Transcriptional regulatory protein chvI| Length = 241 Score = 37.4 bits (85), Expect = 0.041 Identities = 35/134 (26%), Positives = 53/134 (39%) Frame = -3 Query: 643 VRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICK 464 V L + GY V + +G A L + L + ++ MP + G+ LL ++ S Sbjct: 17 VSIALEREGYRVETYTDGASAVDGL--IARPPQLAIFDIKMPRMDGMELLRRLRQKS--- 71 Query: 463 GIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRRCXXXXXXXXXXXI 284 IPVI ++ D L GA DF+ KP + L + I RR Sbjct: 72 DIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASSREASAATGGT 131 Query: 283 QKCSKPKTGDEYAK 242 K T D+ A+ Sbjct: 132 LK----PTADQQAR 141
>CHEB_GEOKA (Q5L0L0) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 37.4 bits (85), Expect = 0.041 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Frame = -3 Query: 613 EVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 EVI +A NG +A + + + R D+V +V MP ++G+ L +I +PV+M+S Sbjct: 30 EVIGTARNGREALEKIAAL--RPDVVTLDVEMPVMNGLETLQRIMRDH---PVPVVMVSS 84 Query: 436 N--DSMSTVFKCLSKGAVDFLVKP 371 + + GAVDF+ KP Sbjct: 85 TTTEGAENTIAAMQYGAVDFVAKP 108
>CHEB_BACSU (Q05522) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 357 Score = 37.4 bits (85), Expect = 0.041 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Frame = -3 Query: 613 EVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 EVI +A NG +A + +E ++ D++ +V MP ++G + KI +PVIM+S Sbjct: 28 EVIGTARNGEEALKKIELLKP--DVITLDVEMPVMNGTDTVRKIIE---IYNLPVIMVSS 82 Query: 436 NDSMST--VFKCLSKGAVDFLVKP 371 CL GA DF+ KP Sbjct: 83 QTEKGKECTINCLEIGAFDFITKP 106
>SP0A_BACAN (P52928) Stage 0 sporulation protein A| Length = 264 Score = 37.0 bits (84), Expect = 0.054 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Frame = -3 Query: 613 EVI-SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSK 437 EVI +A NG + L+D Q D+++ ++ MP L G+ +L K+ + VIM++ Sbjct: 30 EVIGTAYNGQECLNLLKDKQP--DVLVLDIIMPHLDGLAVLEKMRHIERLRQPSVIMLTA 87 Query: 436 NDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHI 332 K + GA F++KP +++ L HI Sbjct: 88 FGQEDVTKKAVDLGASYFILKPF---DMENLTSHI 119
>REGX3_MYCLE (P54884) Sensory transduction protein regX3| Length = 198 Score = 36.6 bits (83), Expect = 0.070 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = -3 Query: 547 DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 D+VL ++ +P +SG + ++ S +PVIM++ DS L GA D++ KP Sbjct: 18 DIVLLDLMLPGMSGTDVYKQLRVRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPY 74 Query: 367 RKNELKTLWQHIWRR 323 EL + + RR Sbjct: 75 SARELIARIRAVLRR 89
>DCTD_RHILE (P10046) C4-dicarboxylate transport transcriptional regulatory| protein dctD Length = 448 Score = 36.6 bits (83), Expect = 0.070 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = -3 Query: 541 VLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRK 362 V+T++ MP + G+ L + + + +PVI+M+ + + + + GA DF+ KP Sbjct: 52 VVTDIRMPEIDGLQLFATLQGMDV--DLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFAA 109 Query: 361 NEL 353 + L Sbjct: 110 DRL 112
>YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29| Length = 210 Score = 36.6 bits (83), Expect = 0.070 Identities = 23/110 (20%), Positives = 50/110 (45%) Frame = -3 Query: 652 RHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHS 473 R+ ++ L + G+ V + AW L+ + +IDL++ ++ MP + G L ++ ++ Sbjct: 14 RNSLKLYLTEIGFHVEESTCVDQAWDILK--RKKIDLIICDIIMPGMGGFNFLHQLRLNT 71 Query: 472 ICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +PVI+++ G ++ KP EL + + + R Sbjct: 72 DYCTLPVILLTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVIIEGVLNR 121
>CIAR_STRR6 (P0A4H8) Transcriptional regulatory protein ciaR| Length = 224 Score = 36.6 bits (83), Expect = 0.070 Identities = 27/97 (27%), Positives = 44/97 (45%) Frame = -3 Query: 613 EVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKN 434 +V E GL E DL+L ++ +P +G +L ++ I PV++M+ Sbjct: 29 QVFDGEEGL-----YEAESGVYDLILLDLMLPEKNGFQVLKELREKGITT--PVLIMTAK 81 Query: 433 DSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +S+ GA D+L KP ELK Q + +R Sbjct: 82 ESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKR 118
>CIAR_STRPN (P0A4H7) Transcriptional regulatory protein ciaR| Length = 224 Score = 36.6 bits (83), Expect = 0.070 Identities = 27/97 (27%), Positives = 44/97 (45%) Frame = -3 Query: 613 EVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKN 434 +V E GL E DL+L ++ +P +G +L ++ I PV++M+ Sbjct: 29 QVFDGEEGL-----YEAESGVYDLILLDLMLPEKNGFQVLKELREKGITT--PVLIMTAK 81 Query: 433 DSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 +S+ GA D+L KP ELK Q + +R Sbjct: 82 ESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKR 118
>SP0A_CLOAB (P58253) Stage 0 sporulation protein A homolog| Length = 281 Score = 36.6 bits (83), Expect = 0.070 Identities = 21/77 (27%), Positives = 44/77 (57%) Frame = -3 Query: 601 AENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMS 422 A++G++A + +E+ + DLV+ ++ MP L G+G+L K+ + +I++S Sbjct: 37 AKDGVEALKLIEN--KKPDLVVLDIIMPRLDGLGVLEKLNNKDAENLPRIIVLSAVGQDK 94 Query: 421 TVFKCLSKGAVDFLVKP 371 + ++ GA ++VKP Sbjct: 95 ITQRAITLGADYYVVKP 111
>BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA| Length = 222 Score = 36.6 bits (83), Expect = 0.070 Identities = 24/94 (25%), Positives = 48/94 (51%) Frame = -3 Query: 604 SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSM 425 +AE+ L++ Y L++ ++ +P G+ L++I +PV++++ +D++ Sbjct: 35 AAEHSLESGHY--------SLMVLDLGLPDEDGLHFLTRIRQKKYT--LPVLILTAHDTL 84 Query: 424 STVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + L GA D+LVKP EL + + RR Sbjct: 85 NDRITGLDVGADDYLVKPFALEELHARIRALLRR 118
>AGMR_PSEAE (P29369) Glycerol metabolism activator (Protein agmR)| Length = 221 Score = 36.2 bits (82), Expect = 0.092 Identities = 23/82 (28%), Positives = 43/82 (52%) Frame = -3 Query: 619 GYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS 440 G EV+ + LD+ L + +DL+L ++ MP + G+ L + + + IPV+++S Sbjct: 27 GSEVMETAD-LDSALGLTQEHDDLDLILLDLNMPGMHGLNGLMNLRNEA--PTIPVVIVS 83 Query: 439 KNDSMSTVFKCLSKGAVDFLVK 374 V + ++ GAV F+ K Sbjct: 84 AEQDKQVVLQAITYGAVGFITK 105
>BCER_BACSU (O34951) Sensory transduction protein bceR| Length = 231 Score = 36.2 bits (82), Expect = 0.092 Identities = 28/115 (24%), Positives = 49/115 (42%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D+ H ++ L Y+V ++ Q V D V+ +V +P G Sbjct: 9 DDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNP--DCVIIDVQLPKFDGFHWCRL 66 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 I S S +P++ +S D + + + GA DF+ KP + L Q ++RR Sbjct: 67 IRSRS---NVPILFLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFRR 118
>DCTR_BACHD (Q9K998) Probable C4-dicarboxylate response regulator dctR| Length = 230 Score = 36.2 bits (82), Expect = 0.092 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Frame = -3 Query: 547 DLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPI 368 DL+L ++ MP G+ + +I I + +I ++ + T+ L G +D+LVKP Sbjct: 54 DLILLDIFMPKQDGLSFIKQIREQYI--DVDIIAVTAANDTKTIKTLLRYGVMDYLVKPF 111 Query: 367 RKNELK---TLWQHIWRR 323 LK T ++ ++R+ Sbjct: 112 TFERLKAALTQYEEMFRK 129
>CCDB_BACSU (P45709) Protein ccdB| Length = 120 Score = 35.8 bits (81), Expect = 0.12 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 4/101 (3%) Frame = -3 Query: 643 VRALLRKCGY----EVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSH 476 +R +L + Y E E D ++ L R DLV ++ MP +GI L I + Sbjct: 17 IREILEEANYIIAGEAADGEQAADLYKKL-----RPDLVTMDITMPVKNGIKALRDILTF 71 Query: 475 SICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNEL 353 VIM + V + + GA DF+VKP + ++ Sbjct: 72 D--PKAKVIMCTAMRQQRIVTEAIELGAKDFIVKPFEETKV 110
>PRR1_SCHPO (O14283) Transcription factor prr1 (Pombe response regulator 1)| Length = 539 Score = 35.8 bits (81), Expect = 0.12 Identities = 27/108 (25%), Positives = 46/108 (42%) Frame = -3 Query: 667 NDDCTRHVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSK 488 +D+ +R + L +V A +G+ A DL+L + +P L G+ + Sbjct: 375 DDELSRRMTIKFLTSFDCQVDVAVDGIGAVNKAN--AGGFDLILMDFILPNLDGLSVTCL 432 Query: 487 ITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 I + P++ ++ N SM+ + G D LVKP K L L Sbjct: 433 IRQYD--HNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQL 478
>CHEB1_BURP1 (Q3JY65) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 364 Score = 35.8 bits (81), Expect = 0.12 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDV--------QNRIDLVLTEVAMPCLSGIGLLSKIT 482 AL+R E+I+++ ++ D Q+ D++ +V MP + G+ L K+ Sbjct: 14 ALIRSLMTEIINSQPDMEVCATAPDPLVARELIKQHNPDVLTLDVEMPRMDGLDFLEKLM 73 Query: 481 SHSICKGIPVIMMSKNDSMST--VFKCLSKGAVDFLVKP 371 + +PV+M+S + + L GAVDF+ KP Sbjct: 74 R---LRPMPVVMVSSLTERGSEITLRALELGAVDFVTKP 109
>CHEB1_BURMA (Q62G12) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 364 Score = 35.8 bits (81), Expect = 0.12 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDV--------QNRIDLVLTEVAMPCLSGIGLLSKIT 482 AL+R E+I+++ ++ D Q+ D++ +V MP + G+ L K+ Sbjct: 14 ALIRSLMTEIINSQPDMEVCATAPDPLVARELIKQHNPDVLTLDVEMPRMDGLDFLEKLM 73 Query: 481 SHSICKGIPVIMMSKNDSMST--VFKCLSKGAVDFLVKP 371 + +PV+M+S + + L GAVDF+ KP Sbjct: 74 R---LRPMPVVMVSSLTERGSEITLRALELGAVDFVTKP 109
>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 35.8 bits (81), Expect = 0.12 Identities = 28/101 (27%), Positives = 44/101 (43%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++ ALL V ++G A + + Q DL+L ++ MP + GI I Sbjct: 682 LIGALLEDMVQHVELCDSGHQAVERAK--QMPFDLILMDIQMPDMDGIRACELIHQLPHQ 739 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 + PVI ++ + K L G D+L KPI + L L Sbjct: 740 RQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL 780
>TCTD_SALTY (P22104) Transcriptional regulatory protein tctD| Length = 224 Score = 35.8 bits (81), Expect = 0.12 Identities = 26/109 (23%), Positives = 52/109 (47%) Frame = -3 Query: 649 HVVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSI 470 H + L + G+ V +GL A L L + ++ MP + G+ ++ ++ Sbjct: 14 HWLEKALVQNGFAVDCVFDGLAADHLLHS--EMYALAVLDINMPGMDGLEVVQRLRKRG- 70 Query: 469 CKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 + +PV++++ +++ K L+ GA D+L KP EL + + RR Sbjct: 71 -QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>DCUR_SHIFL (P59339) Transcriptional regulatory protein dcuR| Length = 239 Score = 35.8 bits (81), Expect = 0.12 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 IDL+L ++ M +G+ LL + ++ CK +++ S D+ +T+ L G VD+L+KP Sbjct: 50 IDLILLDIYMQKENGLDLLP-VLHNARCKSDVIVISSAADA-ATIKDSLHYGVVDYLIKP 107 Query: 370 I---RKNELKTLWQ 338 R E T W+ Sbjct: 108 FQASRFEEALTGWR 121
>DCUR_ECOLI (P0AD01) Transcriptional regulatory protein dcuR| Length = 239 Score = 35.8 bits (81), Expect = 0.12 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 IDL+L ++ M +G+ LL + ++ CK +++ S D+ +T+ L G VD+L+KP Sbjct: 50 IDLILLDIYMQKENGLDLLP-VLHNARCKSDVIVISSAADA-ATIKDSLHYGVVDYLIKP 107 Query: 370 I---RKNELKTLWQ 338 R E T W+ Sbjct: 108 FQASRFEEALTGWR 121
>DCUR_ECOL6 (P59338) Transcriptional regulatory protein dcuR| Length = 239 Score = 35.8 bits (81), Expect = 0.12 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 IDL+L ++ M +G+ LL + ++ CK +++ S D++ T+ L G VD+L+KP Sbjct: 50 IDLILLDIYMQKENGLDLLP-VLHNARCKSDVIVISSAADAV-TIKDSLHYGVVDYLIKP 107 Query: 370 I---RKNELKTLWQ 338 R E T W+ Sbjct: 108 FQASRFEEALTGWR 121
>DCUR_ECO57 (P0AD02) Transcriptional regulatory protein dcuR| Length = 239 Score = 35.8 bits (81), Expect = 0.12 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Frame = -3 Query: 550 IDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKP 371 IDL+L ++ M +G+ LL + ++ CK +++ S D+ +T+ L G VD+L+KP Sbjct: 50 IDLILLDIYMQKENGLDLLP-VLHNARCKSDVIVISSAADA-ATIKDSLHYGVVDYLIKP 107 Query: 370 I---RKNELKTLWQ 338 R E T W+ Sbjct: 108 FQASRFEEALTGWR 121
>CHEB_NITEU (Q820K0) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 358 Score = 35.8 bits (81), Expect = 0.12 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 10/99 (10%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLED---VQNRI-----DLVLTEVAMPCLSGIGLLSKIT 482 AL+RK E+I+A ++ D + I D++ +V MP + G+ L K+ Sbjct: 13 ALIRKLLTEIINARPDMEVIGAAPDPIVAREMIRTLNPDVLTLDVEMPKMDGLEFLEKLM 72 Query: 481 SHSICKGIPVIMMSK--NDSMSTVFKCLSKGAVDFLVKP 371 + +PV+M+S F+ L GAVDF+ KP Sbjct: 73 R---LRPMPVVMVSTLTERGSEVTFRALELGAVDFVAKP 108
>CHEB1_BURPS (Q63PS2) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 367 Score = 35.8 bits (81), Expect = 0.12 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDV--------QNRIDLVLTEVAMPCLSGIGLLSKIT 482 AL+R E+I+++ ++ D Q+ D++ +V MP + G+ L K+ Sbjct: 17 ALIRSLMTEIINSQPDMEVCATAPDPLVARELIKQHNPDVLTLDVEMPRMDGLDFLEKLM 76 Query: 481 SHSICKGIPVIMMSKNDSMST--VFKCLSKGAVDFLVKP 371 + +PV+M+S + + L GAVDF+ KP Sbjct: 77 R---LRPMPVVMVSSLTERGSEITLRALELGAVDFVTKP 112
>CHVI_RHIME (P50350) Transcriptional regulatory protein chvI| Length = 240 Score = 35.8 bits (81), Expect = 0.12 Identities = 28/99 (28%), Positives = 46/99 (46%) Frame = -3 Query: 619 GYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMS 440 GY+V + +G A + L + L + ++ MP + G+ LL ++ S +PVI ++ Sbjct: 25 GYKVETYTDGASALEGL--LARPPQLAIFDIKMPRMDGMELLRRLRQKS---DLPVIFLT 79 Query: 439 KNDSMSTVFKCLSKGAVDFLVKPIRKNELKTLWQHIWRR 323 D L GA DF+ KP + L + I RR Sbjct: 80 SKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118
>SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR| Length = 220 Score = 35.4 bits (80), Expect = 0.16 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 565 DVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKNDSMSTVFKCLSKGAVD 386 DV DL+L +V MP + G L +I C P++ ++ + K L G D Sbjct: 40 DVFQGYDLILLDVMMPDIDGFELCKQIRPLVDC---PILFLTAKTEEEAIVKGLITGGDD 96 Query: 385 FLVKPIRKNEL 353 ++ KP EL Sbjct: 97 YITKPFGVREL 107
>CHEB_PHOLL (Q7N5T1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 350 Score = 35.4 bits (80), Expect = 0.16 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDVQNRIDL-------VLT-EVAMPCLSGIGLLSKIT 482 AL+R+ E+I++ + ++ D DL VLT +V MP + GI L K+ Sbjct: 13 ALMRQIMREIINSHSDMEVVACAPDPLVARDLIKKHNPQVLTLDVEMPRMDGIDFLEKLM 72 Query: 481 SHSICKGIPVIMMSKNDSMST--VFKCLSKGAVDFLVKP 371 + +PV+M+S + + + L GAVDF+ KP Sbjct: 73 R---LRPMPVVMISSLTAKGSEITLRALELGAVDFITKP 108
>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 35.4 bits (80), Expect = 0.16 Identities = 28/101 (27%), Positives = 44/101 (43%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++ ALL V ++G A + + Q DL+L ++ MP + GI I Sbjct: 682 LIGALLEDMVQHVELCDSGHQAVERAK--QMPFDLILMDIQMPDMDGIRACELIHQLPHQ 739 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 + PVI ++ + K L G D+L KPI + L L Sbjct: 740 QQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL 780
>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 35.4 bits (80), Expect = 0.16 Identities = 28/101 (27%), Positives = 44/101 (43%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++ ALL V ++G A + + Q DL+L ++ MP + GI I Sbjct: 682 LIGALLEDMVQHVELCDSGHQAVERAK--QMPFDLILMDIQMPDMDGIRACELIHQLPHQ 739 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 + PVI ++ + K L G D+L KPI + L L Sbjct: 740 QQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL 780
>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 35.4 bits (80), Expect = 0.16 Identities = 28/101 (27%), Positives = 44/101 (43%) Frame = -3 Query: 646 VVRALLRKCGYEVISAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSIC 467 ++ ALL V ++G A + + Q DL+L ++ MP + GI I Sbjct: 682 LIGALLEDMVQHVELCDSGHQAVERAK--QMPFDLILMDIQMPDMDGIRACELIHQLPHQ 739 Query: 466 KGIPVIMMSKNDSMSTVFKCLSKGAVDFLVKPIRKNELKTL 344 + PVI ++ + K L G D+L KPI + L L Sbjct: 740 QQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL 780
>CHEB_RALSO (Q8XQ83) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 381 Score = 35.4 bits (80), Expect = 0.16 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 10/99 (10%) Frame = -3 Query: 637 ALLRKCGYEVISAENGLDAWQYLEDV--------QNRIDLVLTEVAMPCLSGIGLLSKIT 482 AL+R E+I+A+ ++ D Q D++ +V MP + G+ L K+ Sbjct: 16 ALIRSILKEIINAQPDMEVVGVAPDPIIARDLIKQTNPDVLTLDVEMPKMDGLDFLEKLM 75 Query: 481 SHSICKGIPVIMMSK--NDSMSTVFKCLSKGAVDFLVKP 371 + PV+M+S + L GAVDF+ KP Sbjct: 76 R---LRPTPVVMISSLTERGSEATLRALELGAVDFVAKP 111
>CHEB_BACHD (Q9KA55) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 346 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = -3 Query: 604 SAENGLDAWQYLEDVQNRIDLVLTEVAMPCLSGIGLLSKITSHSICKGIPVIMMSKN--D 431 +A NG DA + + + D++ +V MP + GI L ++ S + +P+I++S + Sbjct: 35 TARNGEDALKKRKTLAP--DVMTLDVEMPVMDGIETLKRLMSEN---PLPIIIVSSTTKE 89 Query: 430 SMSTVFKCLSKGAVDFLVKP 371 + GAVDF+ KP Sbjct: 90 GAENALTAMELGAVDFITKP 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,819,968 Number of Sequences: 219361 Number of extensions: 1536959 Number of successful extensions: 4434 Number of sequences better than 10.0: 339 Number of HSP's better than 10.0 without gapping: 4247 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4374 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
