ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X66874.1|PV70HSP P.vulgaris mRNA for 70 kD heat shock protein 60 4e-06
2gb|AY104983.1| Zea mays PCO092463 mRNA sequence 60 4e-06
3ref|XM_468043.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
6dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
7dbj|AK065228.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
8dbj|AK060740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
11gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
12gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
13dbj|AK103835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
14emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 46 0.066
15emb|AL589733.20| Human DNA sequence from clone RP11-164L23 on ch... 42 1.0
16ref|XM_694118.1| PREDICTED: Danio rerio similar to H2B histone f... 42 1.0
17gb|AC135586.8| Homo sapiens 12 BAC RP13-672B3 (Roswell Park Canc... 42 1.0
18gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.0
19emb|AL021811.1|ATF10M6 Arabidopsis thaliana DNA chromosome 4, BA... 42 1.0
20emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, ... 42 1.0
21ref|XM_323944.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.0
22gb|AC084800.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 4.0
23ref|XM_953197.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.0
24gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, co... 40 4.0
25emb|Y15994.1|HSMTM1 Homo sapiens 47kB DNA fragment from Xq28, pr... 40 4.0
26ref|XM_389704.1| Gibberella zeae PH-1 chromosome 4 conserved hyp... 40 4.0
27ref|XM_849105.1| PREDICTED: Canis familiaris hypothetical protei... 40 4.0
28emb|AJ698040.1| Suillus bovinus tubb1 gene for beta-tubulin 1, e... 40 4.0
29emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cos... 40 4.0
30emb|AJ630366.1| Canis familiaris MHC class II region on chromoso... 40 4.0
31gb|AC092980.5| Homo sapiens 3 BAC RP11-756L14 (Roswell Park Canc... 40 4.0
32gb|AC118754.6| Homo sapiens, clone RP11-141J13, complete sequence 40 4.0
33gb|AF020663.1|HSMTM01 Homo sapiens myotubularin (MTM1) gene, pro... 40 4.0
34gb|AY112730.1| Suillus bovinus beta-tubulin mRNA, complete cds 40 4.0
35ref|XM_694166.1| PREDICTED: Danio rerio similar to histone 1, H2... 40 4.0
36gb|AC148396.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 4.0
37gb|AF049067.1|AF049067 Pinus radiata cytochrome P450 (PRE74) mRN... 40 4.0
38gb|AC136957.1| Homo sapiens chromosome X clone RP11-477H13 map q... 40 4.0
39gb|AC109994.2| Homo sapiens chromosome X clone CTD-2537J14 map q... 40 4.0 
>emb|X66874.1|PV70HSP P.vulgaris mRNA for 70 kD heat shock protein
          Length = 2405

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 198  tcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctg 251
            ||||||||| |||||||| || || |||||||| ||||||||||| ||||||||
Sbjct: 2158 tcacttcttgacctcctcatattctgcctctggagcctggtcaccaccaccctg 2105
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>gb|AY104983.1| Zea mays PCO092463 mRNA sequence
          Length = 2588

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 198  tcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctg 251
            ||||||||| |||||||| ||||| ||||| || |||||||| |||||||||||
Sbjct: 2168 tcacttcttaacctcctcatactctgcctccggcgcctggtcgccgccaccctg 2115
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>ref|XM_468043.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2332

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctgcgacc 256
            |||||||||| |||||||||||||| |||||||| ||||| || || || ||||| || |
Sbjct: 2127 ttcacttcttgacctcctcgtactcagcctctggagcctgctcgcctccgccctgagatc 2068

                 
Query: 257  ctcct 261
            |||||
Sbjct: 2067 ctcct 2063
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 197      ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctgcgacc 256
                |||||||||| |||||||||||||| |||||||| ||||| || || || ||||| || |
Sbjct: 32707470 ttcacttcttgacctcctcgtactcagcctctggagcctgctcgcctccgccctgagatc 32707529

                     
Query: 257      ctcct 261
                |||||
Sbjct: 32707530 ctcct 32707534
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>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1448_G06
          Length = 136823

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 197   ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctgcgacc 256
             |||||||||| |||||||||||||| |||||||| ||||| || || || ||||| || |
Sbjct: 35705 ttcacttcttgacctcctcgtactcagcctctggagcctgctcgcctccgccctgagatc 35764

                  
Query: 257   ctcct 261
             |||||
Sbjct: 35765 ctcct 35769
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>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1611_C08
          Length = 135386

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 197    ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctgcgacc 256
              |||||||||| |||||||||||||| |||||||| ||||| || || || ||||| || |
Sbjct: 134841 ttcacttcttgacctcctcgtactcagcctctggagcctgctcgcctccgccctgagatc 134900

                   
Query: 257    ctcct 261
              |||||
Sbjct: 134901 ctcct 134905
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>dbj|AK065228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H04, full
            insert sequence
          Length = 2397

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctgcgacc 256
            |||||||||| |||||||||||||| |||||||| ||||| || || || ||||| || |
Sbjct: 2127 ttcacttcttgacctcctcgtactcagcctctggagcctgctcgcctccgccctgagatc 2068

                 
Query: 257  ctcct 261
            |||||
Sbjct: 2067 ctcct 2063
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>dbj|AK060740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D07, full
            insert sequence
          Length = 1675

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 197  ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctgcgacc 256
            |||||||||| |||||||||||||| |||||||| ||||| || || || ||||| || |
Sbjct: 1447 ttcacttcttgacctcctcgtactcagcctctggagcctgctcgcctccgccctgagatc 1388

                 
Query: 257  ctcct 261
            |||||
Sbjct: 1387 ctcct 1383
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 197    ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctg 251
              |||||||||| |||||||| ||||| ||||| || ||||||||||| || |||||
Sbjct: 745435 ttcacttcttgacctcctcatactcagcctcaggagcctggtcacctccgccctg 745489
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 197    ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctg 251
              |||||||||| |||||||| ||||| ||||| || ||||||||||| || |||||
Sbjct: 745433 ttcacttcttgacctcctcatactcagcctcaggagcctggtcacctccgccctg 745487
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090O10, complete sequence
          Length = 162132

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 197   ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctg 251
             |||||||||| |||||||| ||||| ||||| || ||||||||||| || |||||
Sbjct: 40980 ttcacttcttgacctcctcatactcagcctcaggagcctggtcacctccgccctg 41034
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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16,
              complete sequence
          Length = 160053

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 197    ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctg 251
              |||||||||| |||||||| ||||| ||||| || ||||||||||| || |||||
Sbjct: 131316 ttcacttcttgacctcctcatactcagcctcaggagcctggtcacctccgccctg 131370
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>dbj|AK103835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148E17, full
            insert sequence
          Length = 2485

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 197  ttcacttcttcacctcctcgtactcggcctctggggcctggtcaccgccaccctg 251
            |||||||||| |||||||| ||||| ||||| || ||||||||||| || |||||
Sbjct: 2157 ttcacttcttgacctcctcatactcagcctcaggagcctggtcacctccgccctg 2103
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>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 231    ggcctggtcaccgccaccctgcg 253
              |||||||||||||||||||||||
Sbjct: 238303 ggcctggtcaccgccaccctgcg 238325
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>emb|AL589733.20| Human DNA sequence from clone RP11-164L23 on chromosome 6 Contains the
             5' end of a novel gene, the gene for HGC6.1.1 protein, the
             KNSL3 gene for kinesin-like 3, the gene for a novel
             protein and 5 CpG islands, complete sequence
          Length = 201088

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   agaaggtggggctgggctggg 188
             |||||||||||||||||||||
Sbjct: 85502 agaaggtggggctgggctggg 85482
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>ref|XM_694118.1| PREDICTED: Danio rerio similar to H2B histone family, member Q
           (LOC570616), mRNA
          Length = 375

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 272 ctccttcctggtccttctgcg 292
           |||||||||||||||||||||
Sbjct: 102 ctccttcctggtccttctgcg 82
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>gb|AC135586.8| Homo sapiens 12 BAC RP13-672B3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 74913

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  acctccttcctggtccttctg 290
            |||||||||||||||||||||
Sbjct: 9084 acctccttcctggtccttctg 9104
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 172     ggtggggctgggctggggcag 192
               |||||||||||||||||||||
Sbjct: 2848467 ggtggggctgggctggggcag 2848447
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>emb|AL021811.1|ATF10M6 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M6 (ESSAII project)
          Length = 93353

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 198   tcacttcttcacctcctcgtactcggcctctgg 230
             |||||| ||||| ||||||||||| ||||||||
Sbjct: 66905 tcactttttcacttcctcgtactctgcctctgg 66873
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>emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76
          Length = 165698

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 198    tcacttcttcacctcctcgtactcggcctctgg 230
              |||||| ||||| ||||||||||| ||||||||
Sbjct: 133458 tcactttttcacttcctcgtactctgcctctgg 133490
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>ref|XM_323944.1| Neurospora crassa OR74A hypothetical protein (NCU04589.1) partial
            mRNA
          Length = 1983

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  ctcggcctctggggcctggt 238
            ||||||||||||||||||||
Sbjct: 1165 ctcggcctctggggcctggt 1184
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>gb|AC084800.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-13A15, complete
             sequence
          Length = 213181

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   aaggtggggctgggctgggg 189
             ||||||||||||||||||||
Sbjct: 44499 aaggtggggctgggctgggg 44518
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>ref|XM_953197.1| Neurospora crassa OR74A hypothetical protein (NCU04589.1) partial
            mRNA
          Length = 1983

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  ctcggcctctggggcctggt 238
            ||||||||||||||||||||
Sbjct: 1165 ctcggcctctggggcctggt 1184
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>gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, complete sequence
          Length = 202851

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   gaaggtggggctgggctggg 188
             ||||||||||||||||||||
Sbjct: 61427 gaaggtggggctgggctggg 61446
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>emb|Y15994.1|HSMTM1 Homo sapiens 47kB DNA fragment from Xq28, proximal to MTM1 gene
          Length = 47300

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   aggtggggctgggctggggc 190
             ||||||||||||||||||||
Sbjct: 35141 aggtggggctgggctggggc 35160
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>ref|XM_389704.1| Gibberella zeae PH-1 chromosome 4 conserved hypothetical protein
            (FG09528.1) partial mRNA
          Length = 2253

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  gtactcggcctctggggcct 235
            ||||||||||||||||||||
Sbjct: 1539 gtactcggcctctggggcct 1520
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>ref|XM_849105.1| PREDICTED: Canis familiaris hypothetical protein LOC611437
           (LOC611437), mRNA
          Length = 1126

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 gtggggctgggctggggcag 192
           ||||||||||||||||||||
Sbjct: 360 gtggggctgggctggggcag 341
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>emb|AJ698040.1| Suillus bovinus tubb1 gene for beta-tubulin 1, exons 1-10
          Length = 2544

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  cctcctcgtactcggcctct 228
            ||||||||||||||||||||
Sbjct: 2214 cctcctcgtactcggcctct 2195
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>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10
          Length = 161126

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ctcggcctctggggcctggt 238
             ||||||||||||||||||||
Sbjct: 91000 ctcggcctctggggcctggt 90981
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>emb|AJ630366.1| Canis familiaris MHC class II region on chromosome CFA12, partial
             sequence, BAC clone 21p19, containing partial col11a2
             gene, RXRB, SLC39A7, HSD17B8, RING1, VPS52, RPS18 and
             B3GALT4 genes, C12H6orf11 ORF, KE2, RAB2L, TAPBP, ZNF297
             and DAXX genes
          Length = 143626

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   gaaggtggggctgggctggg 188
             ||||||||||||||||||||
Sbjct: 83158 gaaggtggggctgggctggg 83177
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>gb|AC092980.5| Homo sapiens 3 BAC RP11-756L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136111

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 98    ggagcaaaattttattacagccaa 121
             |||||| |||||||||||||||||
Sbjct: 64511 ggagcacaattttattacagccaa 64534
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>gb|AC118754.6| Homo sapiens, clone RP11-141J13, complete sequence
          Length = 185378

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   aggtggggctgggctggggc 190
             ||||||||||||||||||||
Sbjct: 85371 aggtggggctgggctggggc 85352
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>gb|AF020663.1|HSMTM01 Homo sapiens myotubularin (MTM1) gene, promoter and exon 1
          Length = 4273

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 aggtggggctgggctggggc 190
           ||||||||||||||||||||
Sbjct: 895 aggtggggctgggctggggc 914
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>gb|AY112730.1| Suillus bovinus beta-tubulin mRNA, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  cctcctcgtactcggcctct 228
            ||||||||||||||||||||
Sbjct: 1354 cctcctcgtactcggcctct 1335
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>ref|XM_694166.1| PREDICTED: Danio rerio similar to histone 1, H2bg (LOC570661), mRNA
          Length = 672

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 tccttcctggtccttctgcg 292
           ||||||||||||||||||||
Sbjct: 398 tccttcctggtccttctgcg 379
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>gb|AC148396.3| Medicago truncatula chromosome 2 BAC clone mth2-17k4, complete sequence
          Length = 108273

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 200   acttcttcacctcctcgtactcggcctctggggcctggtc 239
             ||||||||||||| || || || |||||||| ||||||||
Sbjct: 38809 acttcttcacctcttcatattctgcctctggagcctggtc 38770
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>gb|AF049067.1|AF049067 Pinus radiata cytochrome P450 (PRE74) mRNA, complete cds
          Length = 1990

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 189 gcagcttcttcacttcttca 208
           ||||||||||||||||||||
Sbjct: 823 gcagcttcttcacttcttca 804
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>gb|AC136957.1| Homo sapiens chromosome X clone RP11-477H13 map q28, complete sequence
          Length = 166719

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    aggtggggctgggctggggc 190
              ||||||||||||||||||||
Sbjct: 119248 aggtggggctgggctggggc 119267
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>gb|AC109994.2| Homo sapiens chromosome X clone CTD-2537J14 map q28, complete sequence
          Length = 198434

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    aggtggggctgggctggggc 190
              ||||||||||||||||||||
Sbjct: 123519 aggtggggctgggctggggc 123538


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,885,846
Number of Sequences: 3902068
Number of extensions: 2885846
Number of successful extensions: 61441
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61317
Number of HSP's gapped (non-prelim): 124
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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