ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CX036_HUMAN (Q9H7Y0) Protein CXorf36 precursor 28 5.0
2ORN_VIBCH (Q9KV17) Oligoribonuclease (EC 3.1.-.-) 28 6.5
3CD22_MOUSE (P35329) B-cell receptor CD22 precursor (Leu-14) (B-l... 28 8.5

>CX036_HUMAN (Q9H7Y0) Protein CXorf36 precursor|
          Length = 182

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 86  RPVKSMR*--KYRKEILRGRLCVSLSTPRTTNVLYVQVKVQ*F 208
           RPV+  R   KY+ EI   R+C S S P+T ++  V  K + F
Sbjct: 109 RPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTERF 151



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>ORN_VIBCH (Q9KV17) Oligoribonuclease (EC 3.1.-.-)|
          Length = 181

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 138 LPRSISFLYFYRIDFTGLKRLGRKWQESVL 49
           +PR  ++ ++  ID + +K L R+WQ  VL
Sbjct: 120 MPRLEAYFHYRYIDVSTIKELTRRWQPEVL 149



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>CD22_MOUSE (P35329) B-cell receptor CD22 precursor (Leu-14) (B-lymphocyte cell|
           adhesion molecule) (BL-CAM) (Siglec-2)
          Length = 862

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 113 IFTASILPASKDWEENGRSLSCSTYEHSKYXSRRT 9
           ++T S L     W ++G+S+ C     S+  S RT
Sbjct: 208 VYTESKLTFQPKWTDHGKSVKCQVQHSSEVLSERT 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,637,537
Number of Sequences: 219361
Number of extensions: 459575
Number of successful extensions: 1203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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