>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 243  HHRGGALYSPAKPKENSPKGRLLALPAVDAGPYFETQHENHGRDKEEVQAAAQHRWDGAH 422
            H RGG+L  PA+ + +  + RLL +   D+G Y      + G  +  V    Q R  G+H
Sbjct: 2471 HKRGGSL--PARHQVHGSRLRLLQVTPADSGEYVCRVVGSSGTQEASVLVTIQQRLSGSH 2528

>RPOA_DEHSC (Q3ZZP6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 330

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 313 LYLL*MQDPTLKLNMRIMAETKKRYRPPRSTVGTVLTRVVAGSSSKPINFVD 468
           LYLL +      LN+ +  E  + YRPP S   T +  +   +   PI  V+
Sbjct: 123 LYLLTLDSDDAVLNVELEVELGRGYRPPESAENTPIGTIPVDAIFTPIRKVN 174

>Y115_ADE02 (P03290) Hypothetical protein E-115|
          Length = 115

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 362 SWPRQRRGTGRRAAPLGRCSPV*WLARRRNQSTS 463
           +WP +R  TG  +AP G  S   W AR   ++ S
Sbjct: 81  TWPTRRAKTGSASAPAGPASSAPWPARSPERTPS 114

>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein|
           (Polycystin-1L1) (Fragment)
          Length = 531

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -1

Query: 333 LHLQQVKLR---ACPWGCF--LLV*RDYTRRPLDDGEGATTXRSFTFTLL 199
           LH Q++ +     C + C   L+  RD+ +RPLD G  A T   F   LL
Sbjct: 226 LHTQRLAVSFCLLCVYSCLTALVTVRDHQQRPLDVGPTAITLEPFCMALL 275

>PRMA_SYNEL (Q8DM00) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 299

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 2   MVYNXVTSFGLPNTQSSDQMNRINYRS*MKHKGLSTERVQATGLSPVQELIALLYLSP 175
           +VY  + SFG   T +  Q  R+  +  +  + +S   + A G+   Q+++A  YLSP
Sbjct: 19  LVYWRLQSFGCQGTATQLQQGRVLIQGYVPQQRVSLLDIAALGVWIEQDVVAQGYLSP 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,537,187
Number of Sequences: 219361
Number of extensions: 1383906
Number of successful extensions: 3395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3395
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)