| Clone Name | rbaal8i24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene) Length = 1700 Score = 797 bits (402), Expect = 0.0 Identities = 425/430 (98%), Gaps = 2/430 (0%) Strand = Plus / Minus Query: 164 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 1641 Query: 224 cagactggcatggcatctcaacttcctccttcatttagcctcagctttcagctcgtcgtc 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1640 cagactggcatggcatctcaacttcctccttcatttagcctcagctttcagctcgtcgtc 1581 Query: 284 atacttgggacggactttaaagtcgacgttgttgagggccttgttcatcagaatgtccgc 343 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1580 atacttgggacggactttaaagtcgacgttgttggaggccttgttcatcagaatgtccgc 1521 Query: 344 ggagtgtatacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgt 403 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1520 ggagtgtatacctgcaagataagctccgtggacatagccattgtagtgctcgc-tggtgt 1462 Query: 404 gctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagc 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 gctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagc 1402 Query: 464 ggttgacgccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagc 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 ggttgacgccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagc 1342 Query: 524 gcggcacgtagatatcggtggcgtcgggggacgtcccggtcggggaacatgttgcgcagc 583 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1341 gcagcacgtagatatcggtggcgtc-ggggacgtcccggtcggggaacatgttgcgcagc 1283 Query: 584 acgcccacgg 593 |||||||||| Sbjct: 1282 acgcccacgg 1273
>emb|AJ234402.1|HVU234402 Hordeum vulgare partial mRNA; clone cMWG0647 Length = 252 Score = 400 bits (202), Expect = e-108 Identities = 240/247 (97%), Gaps = 6/247 (2%) Strand = Plus / Minus Query: 9 cctcgacggcca-gtgtttttattcgatcaa-ttacaagaaattacatcactggaacgct 66 |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 249 cctcgacggccaagtgtttttattcgatcaaattacaagaaattacatcactggaacgct 190 Query: 67 tcaacaggaaccacatactctcggagaatccaaacacgggaggcacgaaagaaagctgga 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 tcaacaggaaccacatactctcggagaatccaaacacgggaggcacgaaagaaagctgga 130 Query: 127 acgtcacattatttcgcctcacatcaaattcttggggaaaagcttccacgttaa-ctg-- 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 129 acgtcacattatttcgcctcacatcaaattcttggggaaaagcttccacgttaacctgct 70 Query: 184 tggcacgcgtctgagtttatt-ccatgacgatgcatgcgagcagactggcatggcatctc 242 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 69 tggcacgcvtctgagtttattcccatgacgatgcatgcgagcagactggcatggcatctc 10 Query: 243 aacttcc 249 ||||||| Sbjct: 9 aacttcc 3
>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase, exons 1-8 Length = 4217 Score = 325 bits (164), Expect = 9e-86 Identities = 177/180 (98%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 262 cctcagctttcagctcgtcgtcatacttgggacggactttaaagtcgacgttgttgaggg 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3994 cctcagctttcagctcgtcgtcatacttgggacggactttaaagtcgacgttgttggagg 3935 Query: 322 ccttgttcatcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagc 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3934 ccttgttcatcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagc 3875 Query: 382 cattgtagtgctcgcttggtgtgctccccggtgaagtagacccgcccgccaaccggcgcc 441 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3874 cattgtagtgctcgc-tggtgtgctccccggtgaagtagacccgcccgccaaccggcgcc 3816 Score = 281 bits (142), Expect = 1e-72 Identities = 152/154 (98%), Gaps = 1/154 (0%) Strand = Plus / Minus Query: 440 cccggagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagccct 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3690 cccggagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagccct 3631 Query: 500 tgaagaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcc 559 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 3630 tgaagaatcggttggaccaccagcgcagcacgtagatatcggtggcgtc-ggggacgtcc 3572 Query: 560 cggtcggggaacatgttgcgcagcacgcccacgg 593 |||||||||||||||||||||||||||||||||| Sbjct: 3571 cggtcggggaacatgttgcgcagcacgcccacgg 3538 Score = 200 bits (101), Expect = 4e-48 Identities = 101/101 (100%) Strand = Plus / Minus Query: 164 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4217 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 4158 Query: 224 cagactggcatggcatctcaacttcctccttcatttagcct 264 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4157 cagactggcatggcatctcaacttcctccttcatttagcct 4117
>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene) Length = 1583 Score = 188 bits (95), Expect = 1e-44 Identities = 210/245 (85%), Gaps = 5/245 (2%) Strand = Plus / Minus Query: 330 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 389 ||||||||||| || |||| ||||||| |||||||||||| |||||||| || |||||| Sbjct: 1478 atcagaatgtctgcagagtcaatacctgaaagataagctccatggacataaccgttgtag 1419 Query: 390 tgctcgcttggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctg 449 |||||||| ||||||||||||||||||||| |||| |||| ||||| |||| |||||| Sbjct: 1418 tgctcgct-ggtgtgctccccggtgaagtaaaccctcccg---accggtgccctgagctg 1363 Query: 450 gtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcg 509 |||||| ||||||||||||||||||||||||||||||||| ||| |||| || |||| | Sbjct: 1362 gtcgtattcgtagcggttgacgccgatgggccagttggagaaggtgcccctgtagaacct 1303 Query: 510 gttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggtcgggga 569 || ||||||||| || |||||| ||| || || ||||| |||||||||| | |||||| Sbjct: 1302 gtcggaccaccaccgtggcacgaggatgtccgtcgcgtc-ggggacgtcctcgccgggga 1244 Query: 570 acatg 574 ||||| Sbjct: 1243 acatg 1239
>ref|XM_470573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 163 bits (82), Expect = 8e-37 Identities = 215/256 (83%), Gaps = 5/256 (1%) Strand = Plus / Minus Query: 330 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 389 |||||||| ||||| |||| ||||||||||||||| |||| |||||||||||||||||| Sbjct: 989 atcagaatttccgcagagtcaatacctgcaagataacctccatggacatagccattgtag 930 Query: 390 tgctcgcttggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctg 449 | ||||||| |||||||| ||||||||||| |||| | ||| ||| |||| |||||| Sbjct: 929 tactcgctt-gtgtgctcaccggtgaagtaaaccctc---tcaatcggggccctgagctg 874 Query: 450 gtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcg 509 ||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| |||| | Sbjct: 873 gtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgtagaacct 814 Query: 510 gttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggtcgggga 569 ||| |||||||| | || ||| ||| || |||||||| ||||||||| |||| |||| Sbjct: 813 gtttgaccaccatcttgggacgaggatgtcagtggcgtc-agggacgtcctggtcaggga 755 Query: 570 acatgttgcgcagcac 585 ||||||| | |||||| Sbjct: 754 acatgttcctcagcac 739
>ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 161 bits (81), Expect = 3e-36 Identities = 189/223 (84%), Gaps = 4/223 (1%) Strand = Plus / Minus Query: 330 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 389 |||||||| || || |||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 1418 atcagaatctctgcagagtcaatacctgcaagataagctccatggacatagccattgtag 1359 Query: 390 tgctcgcttggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctg 449 |||||| | |||||||| ||||||||||| || | | ||||||||||||| |||||| Sbjct: 1358 cgctcgc-tcgtgtgctcaccggtgaagtacactctc---ccaaccggcgccctgagctg 1303 Query: 450 gtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcg 509 ||| ||||||||||| ||||||||||||||||||||||| || |||| |||||| | Sbjct: 1302 gtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaagaacct 1243 Query: 510 gttggaccaccagcgcggcacgtagatatcggtggcgtcgggg 552 || ||||||||| | ||| ||| ||| ||||||||||||||| Sbjct: 1242 gtcggaccaccatctcgggacgaggatgtcggtggcgtcgggg 1200
>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO) Length = 1750 Score = 157 bits (79), Expect = 5e-35 Identities = 212/253 (83%), Gaps = 5/253 (1%) Strand = Plus / Minus Query: 333 agaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtagtgc 392 ||||| || ||||||| ||||||| |||||| ||||| ||||||||||||||||||||| Sbjct: 1514 agaatttcagcggagtcgatacctgaaagataggctccatggacatagccattgtagtgc 1455 Query: 393 tcgcttggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtc 452 ||||| ||||||||| ||||||||||| |||| ||| |||||| |||| |||||||| Sbjct: 1454 tcgct-ggtgtgctcgccggtgaagtataccctccc---aaccggtgccctaagctggtc 1399 Query: 453 gtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcggtt 512 ||| ||||||||||||||||| | |||||||||||| ||| ||||||| |||| | || Sbjct: 1398 gtattcgtagcggttgacgccaactggccagttggagaaggtgcccttgtagaacctgtc 1339 Query: 513 ggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggtcggggaaca 572 ||||||||| | ||| || ||| ||||||||||| ||||||||| | ||||||||| Sbjct: 1338 ggaccaccacctcgggacaaggatgtcggtggcgtc-cgggacgtccttgccggggaaca 1280 Query: 573 tgttgcgcagcac 585 | || |||||||| Sbjct: 1279 tcttccgcagcac 1267
>gb|AY107888.1| Zea mays PCO061908 mRNA sequence Length = 1895 Score = 157 bits (79), Expect = 5e-35 Identities = 212/253 (83%), Gaps = 5/253 (1%) Strand = Plus / Minus Query: 333 agaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtagtgc 392 ||||| || ||||||| ||||||| |||||| ||||| ||||||||||||||||||||| Sbjct: 1520 agaatttcagcggagtcgatacctgaaagataggctccatggacatagccattgtagtgc 1461 Query: 393 tcgcttggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtc 452 ||||| ||||||||| ||||||||||| |||| ||| |||||| |||| |||||||| Sbjct: 1460 tcgct-ggtgtgctcgccggtgaagtataccctccc---aaccggtgccctaagctggtc 1405 Query: 453 gtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcggtt 512 ||| ||||||||||||||||| | |||||||||||| ||| ||||||| |||| | || Sbjct: 1404 gtattcgtagcggttgacgccaactggccagttggagaaggtgcccttgtagaacctgtc 1345 Query: 513 ggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggtcggggaaca 572 ||||||||| | ||| || ||| ||||||||||| ||||||||| | ||||||||| Sbjct: 1344 ggaccaccacctcgggacaaggatgtcggtggcgtc-cgggacgtccttgccggggaaca 1286 Query: 573 tgttgcgcagcac 585 | || |||||||| Sbjct: 1285 tcttccgcagcac 1273
>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8 Length = 4096 Score = 149 bits (75), Expect = 1e-32 Identities = 196/233 (84%), Gaps = 5/233 (2%) Strand = Plus / Minus Query: 353 acctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctccccgg 412 ||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 3900 acctgaaagataggctccatggacatagccattgtagtgctcgct-ggtgtgctcgccgg 3842 Query: 413 tgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgc 472 ||||||| |||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 3841 tgaagtataccctccc---aaccggtgccctaagctggtcgtattcgtagcggttgacgc 3785 Query: 473 cgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgt 532 | | |||||||||||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 3784 caactggccagttggagaaggtgcccttgtagaacctgtcggaccaccacctcgggacaa 3725 Query: 533 agatatcggtggcgtcgggggacgtcccggtcggggaacatgttgcgcagcac 585 ||| ||||||||||| ||||||||| | |||||||||| || |||||||| Sbjct: 3724 ggatgtcggtggcgtc-cgggacgtccttgccggggaacatcttccgcagcac 3673
>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2 Length = 4344 Score = 149 bits (75), Expect = 1e-32 Identities = 196/233 (84%), Gaps = 5/233 (2%) Strand = Plus / Minus Query: 353 acctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctccccgg 412 ||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 4147 acctgaaagataggctccatggacatagccattgtagtgctcgct-ggtgtgctcaccgg 4089 Query: 413 tgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgc 472 ||||||| |||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 4088 tgaagtataccctccc---aaccggtgccctaagctggtcgtattcgtagcggttgacgc 4032 Query: 473 cgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgt 532 | | |||||||||||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 4031 caactggccagttggagaaggtgcccttgtagaacctgtcggaccaccatctcgggacaa 3972 Query: 533 agatatcggtggcgtcgggggacgtcccggtcggggaacatgttgcgcagcac 585 ||| ||||||||||| ||||||||| | |||||||||| || |||||||| Sbjct: 3971 ggatgtcggtggcgtc-cgggacgtccttgccggggaacatcttccgcagcac 3920
>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3 Length = 3384 Score = 141 bits (71), Expect = 3e-30 Identities = 195/233 (83%), Gaps = 5/233 (2%) Strand = Plus / Minus Query: 353 acctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctccccgg 412 ||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| Sbjct: 3188 acctgaaagataggctccatggacatagccattgtagtgctcgct-ggtgtgctcaccgg 3130 Query: 413 tgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgc 472 ||||||| |||| ||| |||||| |||| ||||||||||| |||||||||||||||| Sbjct: 3129 tgaagtataccctccc---aaccggtgccctaagctggtcgtattcgtagcggttgacgc 3073 Query: 473 cgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgt 532 | | |||||||| ||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 3072 caactggccagttagagaaggtgcccttgtagaacctgtcggaccaccacctcgggacaa 3013 Query: 533 agatatcggtggcgtcgggggacgtcccggtcggggaacatgttgcgcagcac 585 ||| ||||||||||| ||||||||| | |||||||||| || |||||||| Sbjct: 3012 ggatgtcggtggcgtc-tgggacgtccttgccggggaacatcttccgcagcac 2961
>ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1588 Score = 139 bits (70), Expect = 1e-29 Identities = 188/224 (83%), Gaps = 5/224 (2%) Strand = Plus / Minus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 1430 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 1372 Query: 411 ggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgac 470 |||||| ||||| | | ||||||||||||| ||||||||| | |||||||| |||| Sbjct: 1371 ggtgaaatagactctc---ccaaccggcgccctgagctggtcatgttcgtagcgactgac 1315 Query: 471 gccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcac 530 ||||||||||||||||||| || ||| | |||||| | || |||||||| | ||| || Sbjct: 1314 gccgatgggccagttggagaagctgccttggaagaacctgtccgaccaccatctcgggac 1255 Query: 531 gtagatatcggtggcgtcgggggacgtcccggtcggggaacatg 574 | ||| ||||||||||| |||||||||| ||| ||||||||| Sbjct: 1254 gaggatgtcggtggcgtc-ggggacgtcctcgtcagggaacatg 1212
>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence Length = 1587 Score = 139 bits (70), Expect = 1e-29 Identities = 188/224 (83%), Gaps = 5/224 (2%) Strand = Plus / Minus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 1429 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 1371 Query: 411 ggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgac 470 |||||| ||||| | | ||||||||||||| ||||||||| | |||||||| |||| Sbjct: 1370 ggtgaaatagactctc---ccaaccggcgccctgagctggtcatgttcgtagcgactgac 1314 Query: 471 gccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcac 530 ||||||||||||||||||| || ||| | |||||| | || |||||||| | ||| || Sbjct: 1313 gccgatgggccagttggagaagctgccttggaagaacctgtccgaccaccatctcgggac 1254 Query: 531 gtagatatcggtggcgtcgggggacgtcccggtcggggaacatg 574 | ||| ||||||||||| |||||||||| ||| ||||||||| Sbjct: 1253 gaggatgtcggtggcgtc-ggggacgtcctcgtcagggaacatg 1211
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 4e-17 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 348 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctc 407 |||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||| Sbjct: 4848268 tgtatacctgcaagataacctccatggacatagccattgtagtactcgctt-gtgtgctc 4848210 Query: 408 cccggtgaagtagaccc 424 ||||||||||| |||| Sbjct: 4848209 accggtgaagtaaaccc 4848193 Score = 91.7 bits (46), Expect = 2e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 4848050 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 4847991 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggt 563 ||| | ||| |||||||| | || ||| ||| || |||||||| ||||||||| ||| Sbjct: 4847990 gaacctgtttgaccaccatcttgggacgaggatgtcagtggcgtc-agggacgtcctggt 4847932 Query: 564 cggggaacatgttgcgcagcac 585 | ||||||||||| | |||||| Sbjct: 4847931 cagggaacatgttcctcagcac 4847910
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 97.6 bits (49), Expect = 4e-17 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 348 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctc 407 |||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||| Sbjct: 147279 tgtatacctgcaagataacctccatggacatagccattgtagtactcgctt-gtgtgctc 147337 Query: 408 cccggtgaagtagaccc 424 ||||||||||| |||| Sbjct: 147338 accggtgaagtaaaccc 147354 Score = 91.7 bits (46), Expect = 2e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Plus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 147497 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 147556 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggt 563 ||| | ||| |||||||| | || ||| ||| || |||||||| ||||||||| ||| Sbjct: 147557 gaacctgtttgaccaccatcttgggacgaggatgtcagtggcgtc-agggacgtcctggt 147615 Query: 564 cggggaacatgttgcgcagcac 585 | ||||||||||| | |||||| Sbjct: 147616 cagggaacatgttcctcagcac 147637
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 4e-17 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 348 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctc 407 |||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||| Sbjct: 4847483 tgtatacctgcaagataacctccatggacatagccattgtagtactcgctt-gtgtgctc 4847425 Query: 408 cccggtgaagtagaccc 424 ||||||||||| |||| Sbjct: 4847424 accggtgaagtaaaccc 4847408 Score = 91.7 bits (46), Expect = 2e-15 Identities = 119/142 (83%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 4847265 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 4847206 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggt 563 ||| | ||| |||||||| | || ||| ||| || |||||||| ||||||||| ||| Sbjct: 4847205 gaacctgtttgaccaccatcttgggacgaggatgtcagtggcgtc-agggacgtcctggt 4847147 Query: 564 cggggaacatgttgcgcagcac 585 | ||||||||||| | |||||| Sbjct: 4847146 cagggaacatgttcctcagcac 4847125
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 93.7 bits (47), Expect = 6e-16 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 ||||||| |||||||||||| |||||||| || ||||||||||||| ||||||||||||| Sbjct: 2711 atacctgaaagataagctccatggacataaccgttgtagtgctcgc-tggtgtgctcccc 2653 Query: 411 ggtgaagtagacccgcccg 429 ||||||||| |||| |||| Sbjct: 2652 ggtgaagtaaaccctcccg 2634 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| || | Sbjct: 2490 gagctggtcgtattcgtagcggttgacgccgatgggccagttggagaaggtgcccctgta 2431 Query: 504 gaatcggttggaccaccagcgcggcac 530 ||| | || ||||||||| || ||||| Sbjct: 2430 gaacctgtcggaccaccaccgtggcac 2404
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 89.7 bits (45), Expect = 1e-14 Identities = 64/69 (92%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 12092784 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 12092842 Query: 411 ggtgaagta 419 ||||||||| Sbjct: 12092843 ggtgaagta 12092851 Score = 87.7 bits (44), Expect = 4e-14 Identities = 66/72 (91%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 12113134 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 12113192 Query: 411 ggtgaagtagac 422 |||||| ||||| Sbjct: 12113193 ggtgaaatagac 12113204 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 12092982 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 12093041 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggg 552 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||| Sbjct: 12093042 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcgggg 12093090 Score = 61.9 bits (31), Expect = 2e-06 Identities = 107/131 (81%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 12113376 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 12113435 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggt 563 ||| | || |||||||| | ||| ||| ||| ||||||||||| |||||||||| || Sbjct: 12113436 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtc-ggggacgtcctcgt 12113494 Query: 564 cggggaacatg 574 | ||||||||| Sbjct: 12113495 cagggaacatg 12113505
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 89.7 bits (45), Expect = 1e-14 Identities = 64/69 (92%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 4243 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 4301 Query: 411 ggtgaagta 419 ||||||||| Sbjct: 4302 ggtgaagta 4310 Score = 87.7 bits (44), Expect = 4e-14 Identities = 66/72 (91%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 24593 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 24651 Query: 411 ggtgaagtagac 422 |||||| ||||| Sbjct: 24652 ggtgaaatagac 24663 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 4441 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 4500 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggg 552 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||| Sbjct: 4501 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcgggg 4549 Score = 61.9 bits (31), Expect = 2e-06 Identities = 107/131 (81%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 24835 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 24894 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggt 563 ||| | || |||||||| | ||| ||| ||| ||||||||||| |||||||||| || Sbjct: 24895 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtc-ggggacgtcctcgt 24953 Query: 564 cggggaacatg 574 | ||||||||| Sbjct: 24954 cagggaacatg 24964
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 89.7 bits (45), Expect = 1e-14 Identities = 64/69 (92%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 27163 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 27221 Query: 411 ggtgaagta 419 ||||||||| Sbjct: 27222 ggtgaagta 27230 Score = 87.7 bits (44), Expect = 4e-14 Identities = 66/72 (91%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 351 atacctgcaagataagctccgtggacatagccattgtagtgctcgcttggtgtgctcccc 410 |||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| || Sbjct: 47513 atacctgcaagataagctccatggacatagccattgtagcgctcgc-tcgtgtgctcacc 47571 Query: 411 ggtgaagtagac 422 |||||| ||||| Sbjct: 47572 ggtgaaatagac 47583 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 27361 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 27420 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggg 552 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||| Sbjct: 27421 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcgggg 27469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 107/131 (81%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 444 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 503 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 47755 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 47814 Query: 504 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcgggggacgtcccggt 563 ||| | || |||||||| | ||| ||| ||| ||||||||||| |||||||||| || Sbjct: 47815 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtc-ggggacgtcctcgt 47873 Query: 564 cggggaacatg 574 | ||||||||| Sbjct: 47874 cagggaacatg 47884
>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete sequence Length = 106110 Score = 50.1 bits (25), Expect = 0.008 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 372 tggacatagccattgtagtgctcgcttggtgtgctccccggtgaa 416 |||||||||||||||||||| |||||| |||||||| || ||||| Sbjct: 41460 tggacatagccattgtagtgttcgctt-gtgtgctcgcctgtgaa 41503
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.008 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 372 tggacatagccattgtagtgctcgcttggtgtgctccccggtgaa 416 |||||||||||||||||||| |||||| |||||||| || ||||| Sbjct: 11026776 tggacatagccattgtagtgttcgctt-gtgtgctcgcctgtgaa 11026733
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.008 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 372 tggacatagccattgtagtgctcgcttggtgtgctccccggtgaa 416 |||||||||||||||||||| |||||| |||||||| || ||||| Sbjct: 11033216 tggacatagccattgtagtgttcgctt-gtgtgctcgcctgtgaa 11033173
>gb|AC110085.3| Homo sapiens BAC clone RP11-603P13 from 4, complete sequence Length = 80015 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 acatcaaattcttggggaaaa 167 ||||||||||||||||||||| Sbjct: 19517 acatcaaattcttggggaaaa 19497
>gb|AC161607.4| Mus musculus BAC clone RP23-152L11 from chromosome 16, complete sequence Length = 212274 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 gatcaattacaagaaattaca 53 ||||||||||||||||||||| Sbjct: 130559 gatcaattacaagaaattaca 130539
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 ggccagttggagtaggagccc 498 ||||||||||||||||||||| Sbjct: 67336 ggccagttggagtaggagccc 67356
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gacccgcccgccaaccggcg 439 |||||||||||||||||||| Sbjct: 41732 gacccgcccgccaaccggcg 41751
>emb|BX005412.17| Zebrafish DNA sequence from clone DKEY-23O4 in linkage group 16, complete sequence Length = 250962 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atcaattacaagaaattaca 53 |||||||||||||||||||| Sbjct: 93586 atcaattacaagaaattaca 93605
>ref|XM_627096.1| Cryptosporidium parvum Iowa II mannose-6-phosphate isomerase (cgd8_1920), partial mRNA Length = 1731 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aattacaagaaattacatca 56 |||||||||||||||||||| Sbjct: 445 aattacaagaaattacatca 426
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gacccgcccgccaaccggcg 439 |||||||||||||||||||| Sbjct: 27677174 gacccgcccgccaaccggcg 27677193
>emb|BX248414.5| Zebrafish DNA sequence from clone CH211-236E8, complete sequence Length = 149603 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 atcaattacaagaaattaca 53 |||||||||||||||||||| Sbjct: 50641 atcaattacaagaaattaca 50622 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,740,549 Number of Sequences: 3902068 Number of extensions: 3740549 Number of successful extensions: 62146 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61921 Number of HSP's gapped (non-prelim): 186 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)