ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal39a22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, com... 44 0.13
2ref|NM_001017123.2| Xenopus tropicalis ubiquitin-like 7 (bone ma... 44 0.13
3emb|CR761134.2| Xenopus tropicalis finished cDNA, clone TEgg085c12 44 0.13
4gb|BC084315.1| Xenopus laevis hypothetical LOC495126, mRNA (cDNA... 44 0.13
5gb|AY090535.1| Deschampsia antarctica unknown cold induced prote... 42 0.52
6gb|AC090281.8| Homo sapiens chromosome 8, clone RP5-1009N12, com... 42 0.52
7gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complet... 42 0.52
8dbj|AK087159.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 2.1
9emb|BX546441.10| Mouse DNA sequence from clone RP23-366I14 on ch... 40 2.1
10gb|DQ286748.1| Strongylocentrotus purpuratus forkhead transcript... 40 2.1
11gb|AC087568.3| Pan troglodytes clone RP43-135M11, complete sequence 38 8.1
12emb|AL121913.4|HSJ1059L7 Human DNA sequence from clone RP5-1059L... 38 8.1
13gb|AF305426.1|AF305426 Homo sapiens solid tumor-associated 1 pro... 38 8.1
14gb|AC005089.3| Homo sapiens BAC clone CTA-315H11 from 7, complet... 38 8.1
15gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, comp... 38 8.1
16gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 38 8.1
17emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chr... 38 8.1

>gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, complete sequence
          Length = 197718

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 126   ctggagctgccgctccgcgcca 147
             ||||||||||||||||||||||
Sbjct: 51349 ctggagctgccgctccgcgcca 51370



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>ref|NM_001017123.2| Xenopus tropicalis ubiquitin-like 7 (bone marrow stromal
            cell-derived) (ubl7), mRNA
          Length = 1391

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 103  tggcgggaggcctgtagagcatgctg 128
            |||| |||||||||||||||||||||
Sbjct: 1020 tggctggaggcctgtagagcatgctg 995



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>emb|CR761134.2| Xenopus tropicalis finished cDNA, clone TEgg085c12
          Length = 1391

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 103  tggcgggaggcctgtagagcatgctg 128
            |||| |||||||||||||||||||||
Sbjct: 1020 tggctggaggcctgtagagcatgctg 995



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>gb|BC084315.1| Xenopus laevis hypothetical LOC495126, mRNA (cDNA clone
            IMAGE:7008166), partial cds
          Length = 1447

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 103  tggcgggaggcctgtagagcatgctg 128
            |||| |||||||||||||||||||||
Sbjct: 1068 tggctggaggcctgtagagcatgctg 1043



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>gb|AY090535.1| Deschampsia antarctica unknown cold induced protein mRNA, complete
           cds; nuclear gene for plastid product
          Length = 774

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 105 gcgggaggcctgtagagcatg 125
           |||||||||||||||||||||
Sbjct: 624 gcgggaggcctgtagagcatg 604



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>gb|AC090281.8| Homo sapiens chromosome 8, clone RP5-1009N12, complete sequence
          Length = 114875

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    gacagacactctgagtctcaa 53
             |||||||||||||||||||||
Sbjct: 37875 gacagacactctgagtctcaa 37895



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>gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complete sequence
          Length = 174347

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     gacagacactctgagtctcaa 53
              |||||||||||||||||||||
Sbjct: 144212 gacagacactctgagtctcaa 144192



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>dbj|AK087159.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030030I02 product:unclassifiable, full
           insert sequence
          Length = 1839

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  ccagccctggacagacactc 43
           ||||||||||||||||||||
Sbjct: 380 ccagccctggacagacactc 361



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>emb|BX546441.10| Mouse DNA sequence from clone RP23-366I14 on chromosome 2, complete
            sequence
          Length = 114325

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   ccagccctggacagacactc 43
            ||||||||||||||||||||
Sbjct: 9118 ccagccctggacagacactc 9099



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>gb|DQ286748.1| Strongylocentrotus purpuratus forkhead transcription factor K (FoxK)
            mRNA, partial cds
          Length = 1820

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  gccgctccgcgccatcatca 153
            ||||||||||||||||||||
Sbjct: 1098 gccgctccgcgccatcatca 1117



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>gb|AC087568.3| Pan troglodytes clone RP43-135M11, complete sequence
          Length = 150199

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 128   ggagctgccgctccgcgcc 146
             |||||||||||||||||||
Sbjct: 44095 ggagctgccgctccgcgcc 44113



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>emb|AL121913.4|HSJ1059L7 Human DNA sequence from clone RP5-1059L7 on chromosome 20q13.2-13.33
             Contains the 5' end of the TMEPAI gene for transmembrane
             prostate androgen induced mRNA, ESTs, STSs, GSSs and two
             CpG islands, complete sequence
          Length = 150224

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    acagacactctgagtctca 52
             |||||||||||||||||||
Sbjct: 36703 acagacactctgagtctca 36721



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>gb|AF305426.1|AF305426 Homo sapiens solid tumor-associated 1 protein (STAG1/PMEPA1) gene,
             complete cds
          Length = 61505

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    acagacactctgagtctca 52
             |||||||||||||||||||
Sbjct: 16102 acagacactctgagtctca 16084



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>gb|AC005089.3| Homo sapiens BAC clone CTA-315H11 from 7, complete sequence
          Length = 177893

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 128    ggagctgccgctccgcgcc 146
              |||||||||||||||||||
Sbjct: 123566 ggagctgccgctccgcgcc 123548



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>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence
          Length = 201464

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     cagccctggacagacactc 43
              |||||||||||||||||||
Sbjct: 152068 cagccctggacagacactc 152086



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 94      tgacggggatggcgggagg 112
               |||||||||||||||||||
Sbjct: 4919265 tgacggggatggcgggagg 4919247



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>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete
             sequence
          Length = 221534

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 108   ggaggcctgtagagcatgctgga 130
             ||||||| |||||||||||||||
Sbjct: 64536 ggaggccagtagagcatgctgga 64558


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 860,729
Number of Sequences: 3902068
Number of extensions: 860729
Number of successful extensions: 57365
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57316
Number of HSP's gapped (non-prelim): 49
length of query: 167
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 145
effective length of database: 17,147,199,772
effective search space: 2486343966940
effective search space used: 2486343966940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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