| Clone Name | rbaal39a22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, complete sequence Length = 197718 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 126 ctggagctgccgctccgcgcca 147 |||||||||||||||||||||| Sbjct: 51349 ctggagctgccgctccgcgcca 51370
>ref|NM_001017123.2| Xenopus tropicalis ubiquitin-like 7 (bone marrow stromal cell-derived) (ubl7), mRNA Length = 1391 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Minus Query: 103 tggcgggaggcctgtagagcatgctg 128 |||| ||||||||||||||||||||| Sbjct: 1020 tggctggaggcctgtagagcatgctg 995
>emb|CR761134.2| Xenopus tropicalis finished cDNA, clone TEgg085c12 Length = 1391 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Minus Query: 103 tggcgggaggcctgtagagcatgctg 128 |||| ||||||||||||||||||||| Sbjct: 1020 tggctggaggcctgtagagcatgctg 995
>gb|BC084315.1| Xenopus laevis hypothetical LOC495126, mRNA (cDNA clone IMAGE:7008166), partial cds Length = 1447 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Minus Query: 103 tggcgggaggcctgtagagcatgctg 128 |||| ||||||||||||||||||||| Sbjct: 1068 tggctggaggcctgtagagcatgctg 1043
>gb|AY090535.1| Deschampsia antarctica unknown cold induced protein mRNA, complete cds; nuclear gene for plastid product Length = 774 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 gcgggaggcctgtagagcatg 125 ||||||||||||||||||||| Sbjct: 624 gcgggaggcctgtagagcatg 604
>gb|AC090281.8| Homo sapiens chromosome 8, clone RP5-1009N12, complete sequence Length = 114875 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 gacagacactctgagtctcaa 53 ||||||||||||||||||||| Sbjct: 37875 gacagacactctgagtctcaa 37895
>gb|AC008066.4| Homo sapiens BAC clone RP11-293D9 from 8, complete sequence Length = 174347 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 gacagacactctgagtctcaa 53 ||||||||||||||||||||| Sbjct: 144212 gacagacactctgagtctcaa 144192
>dbj|AK087159.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030030I02 product:unclassifiable, full insert sequence Length = 1839 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ccagccctggacagacactc 43 |||||||||||||||||||| Sbjct: 380 ccagccctggacagacactc 361
>emb|BX546441.10| Mouse DNA sequence from clone RP23-366I14 on chromosome 2, complete sequence Length = 114325 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ccagccctggacagacactc 43 |||||||||||||||||||| Sbjct: 9118 ccagccctggacagacactc 9099
>gb|DQ286748.1| Strongylocentrotus purpuratus forkhead transcription factor K (FoxK) mRNA, partial cds Length = 1820 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gccgctccgcgccatcatca 153 |||||||||||||||||||| Sbjct: 1098 gccgctccgcgccatcatca 1117
>gb|AC087568.3| Pan troglodytes clone RP43-135M11, complete sequence Length = 150199 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 ggagctgccgctccgcgcc 146 ||||||||||||||||||| Sbjct: 44095 ggagctgccgctccgcgcc 44113
>emb|AL121913.4|HSJ1059L7 Human DNA sequence from clone RP5-1059L7 on chromosome 20q13.2-13.33 Contains the 5' end of the TMEPAI gene for transmembrane prostate androgen induced mRNA, ESTs, STSs, GSSs and two CpG islands, complete sequence Length = 150224 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 acagacactctgagtctca 52 ||||||||||||||||||| Sbjct: 36703 acagacactctgagtctca 36721
>gb|AF305426.1|AF305426 Homo sapiens solid tumor-associated 1 protein (STAG1/PMEPA1) gene, complete cds Length = 61505 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 acagacactctgagtctca 52 ||||||||||||||||||| Sbjct: 16102 acagacactctgagtctca 16084
>gb|AC005089.3| Homo sapiens BAC clone CTA-315H11 from 7, complete sequence Length = 177893 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 128 ggagctgccgctccgcgcc 146 ||||||||||||||||||| Sbjct: 123566 ggagctgccgctccgcgcc 123548
>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence Length = 201464 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 cagccctggacagacactc 43 ||||||||||||||||||| Sbjct: 152068 cagccctggacagacactc 152086
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 tgacggggatggcgggagg 112 ||||||||||||||||||| Sbjct: 4919265 tgacggggatggcgggagg 4919247
>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete sequence Length = 221534 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 108 ggaggcctgtagagcatgctgga 130 ||||||| ||||||||||||||| Sbjct: 64536 ggaggccagtagagcatgctgga 64558 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 860,729 Number of Sequences: 3902068 Number of extensions: 860729 Number of successful extensions: 57365 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57316 Number of HSP's gapped (non-prelim): 49 length of query: 167 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 145 effective length of database: 17,147,199,772 effective search space: 2486343966940 effective search space used: 2486343966940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)