ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38l10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 1.5
2gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 1.5
3gb|BC085568.1| Danio rerio zgc:103631, mRNA (cDNA clone MGC:1036... 38 5.8
4ref|NM_173371.2| Mus musculus hexose-6-phosphate dehydrogenase (... 38 5.8
5gb|AC114341.9| Homo sapiens chromosome 18, clone RP11-248M19, co... 38 5.8
6gb|BC042677.1| Mus musculus hexose-6-phosphate dehydrogenase (gl... 38 5.8
7emb|AL451042.10| Human DNA sequence from clone RP11-276H7 on chr... 38 5.8
8ref|NM_001007368.1| Danio rerio zgc:103631 (zgc:103631), mRNA 38 5.8
9emb|BX511207.10| Zebrafish DNA sequence from clone CH211-129L18 ... 38 5.8
10dbj|AK159373.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 38 5.8
11dbj|AK172249.1| Mus musculus activated spleen cDNA, RIKEN full-l... 38 5.8
12gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 38 5.8
13dbj|AK045199.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 38 5.8
14ref|XM_233688.3| PREDICTED: Rattus norvegicus hexose-6-phosphate... 38 5.8
15emb|AL929050.6| Zebrafish DNA sequence from clone DKEYP-91C1 in ... 38 5.8
16gb|AC101855.14| Mus musculus chromosome 1, clone RP23-301D16, co... 38 5.8
17emb|AL606914.9| Mouse DNA sequence from clone RP23-169H13 on chr... 38 5.8 
>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 7
           of 460 of the complete genome
          Length = 10647

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 100 ccgccgcgttcgacgaaatg 119
           ||||||||||||||||||||
Sbjct: 485 ccgccgcgttcgacgaaatg 504
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ccgccgcgttcgacgaaatg 119
             ||||||||||||||||||||
Sbjct: 65332 ccgccgcgttcgacgaaatg 65351
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>gb|BC085568.1| Danio rerio zgc:103631, mRNA (cDNA clone MGC:103631 IMAGE:7255118),
           complete cds
          Length = 2079

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 47  ccttgtccttgtccacatc 65
           |||||||||||||||||||
Sbjct: 708 ccttgtccttgtccacatc 690
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>ref|NM_173371.2| Mus musculus hexose-6-phosphate dehydrogenase (glucose
            1-dehydrogenase) (H6pd), mRNA
          Length = 4740

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   tgtccttgtccacatcgac 68
            |||||||||||||||||||
Sbjct: 1301 tgtccttgtccacatcgac 1319
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>gb|AC114341.9| Homo sapiens chromosome 18, clone RP11-248M19, complete sequence
          Length = 169813

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     ccttgtccttgtccacatc 65
              |||||||||||||||||||
Sbjct: 138687 ccttgtccttgtccacatc 138705
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>gb|BC042677.1| Mus musculus hexose-6-phosphate dehydrogenase (glucose
            1-dehydrogenase), mRNA (cDNA clone MGC:25861
            IMAGE:4195793), complete cds
          Length = 4583

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   tgtccttgtccacatcgac 68
            |||||||||||||||||||
Sbjct: 1126 tgtccttgtccacatcgac 1144
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>emb|AL451042.10| Human DNA sequence from clone RP11-276H7 on chromosome 1 Contains the
             EPHA2 gene for EphA2, two novel genes and two CpG islands,
             complete sequence
          Length = 88098

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    agctgccttgtccttgtcc 60
             |||||||||||||||||||
Sbjct: 44323 agctgccttgtccttgtcc 44305
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>ref|NM_001007368.1| Danio rerio zgc:103631 (zgc:103631), mRNA
          Length = 2079

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 47  ccttgtccttgtccacatc 65
           |||||||||||||||||||
Sbjct: 708 ccttgtccttgtccacatc 690
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>emb|BX511207.10| Zebrafish DNA sequence from clone CH211-129L18 in linkage group 25,
             complete sequence
          Length = 128243

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    ccttgtccttgtccacatc 65
             |||||||||||||||||||
Sbjct: 94976 ccttgtccttgtccacatc 94958
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>dbj|AK159373.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420018L06 product:hexose-6-phosphate
            dehydrogenase (glucose 1-dehydrogenase), full insert
            sequence
          Length = 4589

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   tgtccttgtccacatcgac 68
            |||||||||||||||||||
Sbjct: 1174 tgtccttgtccacatcgac 1192
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>dbj|AK172249.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830109M03 product:hexose-6-phosphate
            dehydrogenase (glucose 1-dehydrogenase), full insert
            sequence
          Length = 4618

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   tgtccttgtccacatcgac 68
            |||||||||||||||||||
Sbjct: 1180 tgtccttgtccacatcgac 1198
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 99      gccgccgcgttcgacgaaa 117
               |||||||||||||||||||
Sbjct: 1566832 gccgccgcgttcgacgaaa 1566814
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>dbj|AK045199.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130046C02 product:similar to
            GDH/6PGL ENDOPLASMIC BIFUNCTIONAL PROTEIN PRECURSOR
            [INCLUDES: GLUCOSE 1-DEHYDROGENASE (EC 1.1.1.47)
            (HEXOSE-6-PHOSPHATE DEHYDROGENASE); 6-
            PHOSPHOGLUCONOLACTONASE (EC 3.1.1.31) (6PGL)] [Homo
            sapiens], full insert sequence
          Length = 4740

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   tgtccttgtccacatcgac 68
            |||||||||||||||||||
Sbjct: 1301 tgtccttgtccacatcgac 1319
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>ref|XM_233688.3| PREDICTED: Rattus norvegicus hexose-6-phosphate dehydrogenase
            (glucose 1-dehydrogenase) (predicted) (H6pd_predicted),
            mRNA
          Length = 2409

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   tgtccttgtccacatcgac 68
            |||||||||||||||||||
Sbjct: 1047 tgtccttgtccacatcgac 1065
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>emb|AL929050.6| Zebrafish DNA sequence from clone DKEYP-91C1 in linkage group 17,
              complete sequence
          Length = 196743

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     ccttgtccttgtccacatc 65
              |||||||||||||||||||
Sbjct: 114270 ccttgtccttgtccacatc 114252
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>gb|AC101855.14| Mus musculus chromosome 1, clone RP23-301D16, complete sequence
          Length = 170913

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     tagctgccttgtccttgtc 59
              |||||||||||||||||||
Sbjct: 116666 tagctgccttgtccttgtc 116648
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>emb|AL606914.9| Mouse DNA sequence from clone RP23-169H13 on chromosome 4, complete
              sequence
          Length = 197061

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     tgtccttgtccacatcgac 68
              |||||||||||||||||||
Sbjct: 107283 tgtccttgtccacatcgac 107301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 571,887
Number of Sequences: 3902068
Number of extensions: 571887
Number of successful extensions: 40373
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40244
Number of HSP's gapped (non-prelim): 129
length of query: 125
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 104
effective length of database: 17,151,101,840
effective search space: 1783714591360
effective search space used: 1783714591360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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