ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38j04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC119155.6| Mus musculus chromosome 3, clone RP23-43A4, compl... 40 2.6
2gb|AC122021.2| Mus musculus BAC clone RP24-366N1 from 3, complet... 40 2.6
3gb|AY643735.1| Physalis pubescens MPF2 (MPF2) gene, promoter reg... 40 2.6
4emb|AL671215.4| Mouse DNA sequence from clone RP23-277C18 on chr... 40 2.6

>gb|AC119155.6| Mus musculus chromosome 3, clone RP23-43A4, complete sequence
          Length = 147451

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   agctggatcaaaaagatgaggcta 162
             ||||||||||||||| ||||||||
Sbjct: 32476 agctggatcaaaaaggtgaggcta 32499



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>gb|AC122021.2| Mus musculus BAC clone RP24-366N1 from 3, complete sequence
          Length = 186873

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 139    agctggatcaaaaagatgaggcta 162
              ||||||||||||||| ||||||||
Sbjct: 141376 agctggatcaaaaaggtgaggcta 141399



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>gb|AY643735.1| Physalis pubescens MPF2 (MPF2) gene, promoter region and complete cds
          Length = 9448

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   attttctataattaatagcg 82
            ||||||||||||||||||||
Sbjct: 3904 attttctataattaatagcg 3885



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>emb|AL671215.4| Mouse DNA sequence from clone RP23-277C18 on chromosome X, complete
              sequence
          Length = 182633

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     aaaagatttaacacgacttc 39
              ||||||||||||||||||||
Sbjct: 126186 aaaagatttaacacgacttc 126205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,866,640
Number of Sequences: 3902068
Number of extensions: 1866640
Number of successful extensions: 126583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126575
Number of HSP's gapped (non-prelim): 8
length of query: 205
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 183
effective length of database: 17,147,199,772
effective search space: 3137937558276
effective search space used: 3137937558276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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