ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal38i24 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/17 (100%), Positives = 17/17 (100%) Frame = -2 Query: 193 GDVYVGGKTGLFLWAVT 143 GDVYVGGKTGLFLWAVT Sbjct: 102 GDVYVGGKTGLFLWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 34.3 bits (77), Expect = 0.093 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -2 Query: 193 GDVYVGGKTGLFLWAVT 143 GDVYVGG TGL +WAVT Sbjct: 100 GDVYVGGTTGLAIWAVT 116
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 34.3 bits (77), Expect = 0.093 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -2 Query: 193 GDVYVGGKTGLFLWAVT 143 GDVYVGG TGL +WAVT Sbjct: 102 GDVYVGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 34.3 bits (77), Expect = 0.093 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -2 Query: 193 GDVYVGGKTGLFLWAVT 143 GDVYVGG TGL +WAVT Sbjct: 102 GDVYVGGTTGLAIWAVT 118
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 33.5 bits (75), Expect = 0.16 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 Query: 193 GDVYVGGKTGLFLWAVT 143 GDVY GG TGL +WAVT Sbjct: 104 GDVYAGGTTGLLIWAVT 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 31.6 bits (70), Expect = 0.60 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 Query: 193 GDVYVGGKTGLFLWAVT 143 GDVY GG TGL +WAVT Sbjct: 105 GDVYKGGVTGLAIWAVT 121
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 31.6 bits (70), Expect = 0.60 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -2 Query: 193 GDVYVGGKTGLFLWAVT 143 GDVY GG TGL +WAVT Sbjct: 104 GDVYKGGVTGLAIWAVT 120
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 29.3 bits (64), Expect = 3.0 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 25 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 192 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRK 254
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 28.9 bits (63), Expect = 3.9 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +1 Query: 25 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 192 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESVCDEFAPNLKGRPRK 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,623,833 Number of Sequences: 219361 Number of extensions: 449721 Number of successful extensions: 1484 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1434 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1481 length of database: 80,573,946 effective HSP length: 40 effective length of database: 71,799,506 effective search space used: 1723188144 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
