ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38i24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 385 e-104
2ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 119 3e-24
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 3e-24
4dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 119 3e-24
5emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 119 3e-24
6ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-06
7dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
8dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
9gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 52 6e-04
10dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 6e-04
11gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, co... 40 2.4
12gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome... 40 2.4
13gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 40 2.4
14emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section... 40 2.4
15emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N... 40 2.4
16dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor... 40 2.4
17gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 2.4
18dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full ... 40 2.4
19ref|XM_425782.1| PREDICTED: Gallus gallus similar to Hu-Claspin ... 38 9.6
20gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, comp... 38 9.6
21ref|XM_965886.1| PREDICTED: Tribolium castaneum similar to CG839... 38 9.6
22emb|BX897699.1| Bartonella henselae strain Houston-1, complete g... 38 9.6
23gb|AC135329.12| Homo sapiens chromosome 15, clone RP11-1365A12, ... 38 9.6
24gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, comple... 38 9.6
25gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, comp... 38 9.6
26gb|AC092850.13| Homo sapiens 12 BAC RP11-346B9 (Roswell Park Can... 38 9.6
27emb|BX935928.1| Gallus gallus finished cDNA, clone ChEST438j15 38 9.6
28gb|AF224251.1|AF224242S10 Homo sapiens HERC2 (HERC2) gene, exon ... 38 9.6
29gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, compl... 38 9.6
30gb|AC126332.9| Homo sapiens chromosome 15, clone RP11-665A22, co... 38 9.6
31emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on ch... 38 9.6
32emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chr... 38 9.6 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  385 bits (194), Expect = e-104
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacatatgtcctgacggttataatccgcactattatacacatcgtttggtgcatagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttacatatgtcctgacggttataatccgcactattatacacatcgtttggtgcatagctt 463

                                                                       
Query: 61  ggtttgctgcacataggcttcaggaagccaaggcgctagtactgtagacaagaagagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggtttgctgcacataggcttcaggaagccaaggcgctagtactgtagacaagaagagcac 403

                                                                       
Query: 121 cgcccagcagaattccagcaagagtcactgcccagagaaacagccccgtctttcctccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cgcccagcagaattccagcaagagtcactgcccagagaaacagccccgtctttcctccaa 343

                         
Query: 181 cataaacgtcgcca 194
           ||||||||||||||
Sbjct: 342 cataaacgtcgcca 329
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  119 bits (60), Expect = 3e-24
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                       
Query: 84  gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaaga 143
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                               
Query: 144 gtcactgcccagagaaacagccccgtctttcctcca 179
           || ||||||||||| |||| ||| ||||||||||||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctcca 306
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 3e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                           
Query: 77      gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 136
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 137     agcaagagtcactgcccagagaaacagccccgtctttcct 176
               || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                        
Query: 103     tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 159
               |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  119 bits (60), Expect = 3e-24
 Identities = 90/100 (90%)
 Strand = Plus / Minus

                                                                         
Query: 77    gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 136
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 137   agcaagagtcactgcccagagaaacagccccgtctttcct 176
             || |||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 103   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 159
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  119 bits (60), Expect = 3e-24
 Identities = 60/60 (100%)
 Strand = Plus / Minus

                                                                       
Query: 135 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtcgcca 318
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 103 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 162
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                 
Query: 163 gccccgtctttcctccaacata 184
             || | |||||||||||||||
Sbjct: 400 aacctgcctttcctccaacata 379
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 103 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 162
           |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                 
Query: 163 gccccgtctttcctccaacata 184
             || | |||||||||||||||
Sbjct: 400 aacctgcctttcctccaacata 379
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 103   tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaa 159
             |||||||||||| ||| ||||| |  ||||||||||||||||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 102 ctgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaac 161
           ||||| |||||||||||||| ||   ||||| |||||||||||| | |||||||| ||  
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatg 415

                                     
Query: 162 agccccgtctttcctccaacataaac 187
           || || ||  ||||||||||||||||
Sbjct: 414 agaccagtggttcctccaacataaac 389
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                       
Query: 103 tgtagacaagaagagcaccgcccagcagaattccagcaagagtcactgcccagagaaaca 162
           |||||||||||| ||| ||||| |  ||| ||||||||||||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                 
Query: 163 gccccgtctttcctccaacata 184
             || | |||||||||||||||
Sbjct: 401 aacctgcctttcctccaacata 380
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>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   agtactgtagacaagaagag 117
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550
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>gb|AC134545.5| Mus musculus BAC clone RP24-470H2 from chromosome 18, complete sequence
          Length = 155887

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ccagcagaattccagcaaga 143
             ||||||||||||||||||||
Sbjct: 25861 ccagcagaattccagcaaga 25880
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete
            sequence
          Length = 215137

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  ccagcagaattccagcaaga 143
            ||||||||||||||||||||
Sbjct: 7108 ccagcagaattccagcaaga 7089
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>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     ttggtttgctgcacataggc 78
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075
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>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   ttggtttgctgcacataggc 78
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331
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>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 41  catcgtttggtgcatagctt 60
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     agtactgtagacaagaagag 117
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412
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>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 41  catcgtttggtgcatagctt 60
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442
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>ref|XM_425782.1| PREDICTED: Gallus gallus similar to Hu-Claspin (LOC428223), mRNA
          Length = 6597

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 144 gtcactgcccagagaaaca 162
           |||||||||||||||||||
Sbjct: 628 gtcactgcccagagaaaca 646
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>gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, complete sequence
          Length = 151993

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 152    ccagagaaacagccccgtc 170
              |||||||||||||||||||
Sbjct: 134903 ccagagaaacagccccgtc 134885
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>ref|XM_965886.1| PREDICTED: Tribolium castaneum similar to CG8397-PA (LOC659594),
           mRNA
          Length = 669

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 gagcaccgcccagcagaat 133
           |||||||||||||||||||
Sbjct: 618 gagcaccgcccagcagaat 636
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>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   tactgtagacaagaagagc 118
             |||||||||||||||||||
Sbjct: 28001 tactgtagacaagaagagc 28019
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>gb|AC135329.12| Homo sapiens chromosome 15, clone RP11-1365A12, complete sequence
          Length = 188766

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 123  cccagcagaattccagcaagagt 145
            |||| ||||||||||||||||||
Sbjct: 5949 cccaccagaattccagcaagagt 5927
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>gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, complete sequence
          Length = 184596

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 152   ccagagaaacagccccgtc 170
             |||||||||||||||||||
Sbjct: 51944 ccagagaaacagccccgtc 51926
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>gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, complete sequence
          Length = 159331

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 160   acagccccgtctttcctcc 178
             |||||||||||||||||||
Sbjct: 86213 acagccccgtctttcctcc 86195
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>gb|AC092850.13| Homo sapiens 12 BAC RP11-346B9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176733

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 165    cccgtctttcctccaacataaac 187
              |||||||||||||||||| ||||
Sbjct: 145913 cccgtctttcctccaacagaaac 145935
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>emb|BX935928.1| Gallus gallus finished cDNA, clone ChEST438j15
          Length = 794

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 144 gtcactgcccagagaaaca 162
           |||||||||||||||||||
Sbjct: 346 gtcactgcccagagaaaca 364
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>gb|AF224251.1|AF224242S10 Homo sapiens HERC2 (HERC2) gene, exon 66 and partial cds
          Length = 705

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 123 cccagcagaattccagcaagagt 145
           |||| ||||||||||||||||||
Sbjct: 173 cccaccagaattccagcaagagt 151
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>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence
          Length = 201243

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 160    acagccccgtctttcctcc 178
              |||||||||||||||||||
Sbjct: 180977 acagccccgtctttcctcc 180959
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>gb|AC126332.9| Homo sapiens chromosome 15, clone RP11-665A22, complete sequence
          Length = 161099

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 123   cccagcagaattccagcaagagt 145
             |||| ||||||||||||||||||
Sbjct: 19216 cccaccagaattccagcaagagt 19238
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>emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on chromosome 4, complete
             sequence
          Length = 198426

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   agcagaattccagcaagag 144
             |||||||||||||||||||
Sbjct: 66857 agcagaattccagcaagag 66875
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>emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chromosome X, complete
             sequence
          Length = 175639

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 154   agagaaacagccccgtctttcct 176
             ||||||||||||| |||||||||
Sbjct: 41492 agagaaacagcccagtctttcct 41470


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,424,800
Number of Sequences: 3902068
Number of extensions: 1424800
Number of successful extensions: 111892
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111797
Number of HSP's gapped (non-prelim): 91
length of query: 194
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 172
effective length of database: 17,147,199,772
effective search space: 2949318360784
effective search space used: 2949318360784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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