ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1US27_HCMVA (P09703) G-protein coupled receptor homolog US27 (HHRF2) 30 2.4
2KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier fami... 28 7.1

>US27_HCMVA (P09703) G-protein coupled receptor homolog US27 (HHRF2)|
          Length = 362

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 3   DRLYNIMCMCIYIATDSIHIRACFLEPCWYMNMGIHTFLGT 125
           D L N++  C+Y+     ++RAC       +N GI+  +GT
Sbjct: 266 DTLQNVIIFCLYVGQFLAYVRAC-------LNPGIYILVGT 299



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>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member|
           7) (Histidine-rich membrane protein Ke4)
          Length = 476

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 26  HVHIHSNR*HSHTSMLSRAMLVHEHGHTH 112
           H H H +  H H+   S     H HGHTH
Sbjct: 47  HGHSHEDFHHGHSHGHSHEDFHHGHGHTH 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,558,126
Number of Sequences: 219361
Number of extensions: 218454
Number of successful extensions: 643
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 80,573,946
effective HSP length: 17
effective length of database: 76,844,809
effective search space used: 1844275416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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