ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38h15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 297 6e-78
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 297 6e-78
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 270 1e-69
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 167 1e-38
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 167 1e-38
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 111 7e-22
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 111 7e-22
8gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 101 7e-19
9gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 101 7e-19
10gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 101 7e-19
11dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 101 7e-19
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 101 7e-19
13dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 7e-19
14dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 7e-19
15dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 7e-19
16dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 7e-19
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 101 7e-19
18dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 101 7e-19
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 101 7e-19
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 90 3e-15
21dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 4e-14
22gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 82 7e-13
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.036
24gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 46 0.036
25gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 46 0.036
26gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 46 0.036
27gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 46 0.036
28dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.036
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.56
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.56
31emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.56
32gb|AC105982.10| Mus musculus chromosome 15, clone RP24-159I1, co... 40 2.2
33gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 2.2
34gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 2.2
35gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 2.2
36emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 2.2
37gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 2.2
38ref|XM_865917.1| PREDICTED: Bos taurus similar to TBC1 domain fa... 38 8.8
39ref|XM_591615.2| PREDICTED: Bos taurus similar to TBC1 domain fa... 38 8.8
40gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal... 38 8.8
41gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence 38 8.8
42gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, com... 38 8.8
43emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in... 38 8.8
44gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome... 38 8.8
45emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230... 38 8.8
46gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome... 38 8.8
47gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete ... 38 8.8
48emb|BX942833.8| Zebrafish DNA sequence from clone DKEY-177F17 in... 38 8.8
49gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome ... 38 8.8
50emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in... 38 8.8
51gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 38 8.8
52dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 38 8.8
53gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complet... 38 8.8
54gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosom... 38 8.8
55gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosom... 38 8.8
56gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 38 8.8
57emb|CR937049.3| CH230-323M7, complete sequence 38 8.8 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  297 bits (150), Expect = 6e-78
 Identities = 162/167 (97%)
 Strand = Plus / Minus

                                                                        
Query: 13   tatattaacaaaacatgcccagcaatngnttggatgcgatgcggacttaggtaggtaaaa 72
            |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 7725 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaa 7666

                                                                        
Query: 73   catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgccgncgctcct 132
            ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 7665 catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcct 7606

                                                           
Query: 133  tgccgttgggtcgtagttcttggcattttggacggtgcaaccttccg 179
            ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7605 tgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 7559
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  297 bits (150), Expect = 6e-78
 Identities = 162/167 (97%)
 Strand = Plus / Minus

                                                                        
Query: 13   tatattaacaaaacatgcccagcaatngnttggatgcgatgcggacttaggtaggtaaaa 72
            |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 1365 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaaa 1306

                                                                        
Query: 73   catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgccgncgctcct 132
            ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1305 catcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcct 1246

                                                           
Query: 133  tgccgttgggtcgtagttcttggcattttggacggtgcaaccttccg 179
            ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1245 tgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 1199
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  270 bits (136), Expect = 1e-69
 Identities = 162/169 (95%), Gaps = 2/169 (1%)
 Strand = Plus / Minus

                                                                        
Query: 13   tatattaacaaaacatgcccagcaatngnttggatgcgatgcggacttag-gtaggtaaa 71
            |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct: 1674 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagtgtaggtaaa 1615

                                                                        
Query: 72   acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg-ccgncgctc 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||
Sbjct: 1614 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgctc 1555

                                                             
Query: 131  cttgccgttgggtcgtagttcttggcattttggacggtgcaaccttccg 179
            ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1554 cttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 1506
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  167 bits (84), Expect = 1e-38
 Identities = 146/165 (88%), Gaps = 7/165 (4%)
 Strand = Plus / Minus

                                                                       
Query: 13  tatattaacaaaacatgcccagcaatngnttggatgcgatgcgg-acttaggta-----g 66
           |||||||||||||||||||||||||| | ||||||||||||||| |||||||||     |
Sbjct: 745 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagg 686

                                                                       
Query: 67  gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgccgnc 126
            |||||||||||||||||||  ||||||||||||||||||||||||||||||||| || |
Sbjct: 685 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 627

                                                        
Query: 127 gctccttgccgttgggtcgtagttcttggcattttggacggtgca 171
            ||||| |||||||||||| ||||||||||| | ||| |||||||
Sbjct: 626 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgca 582
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  167 bits (84), Expect = 1e-38
 Identities = 146/165 (88%), Gaps = 7/165 (4%)
 Strand = Plus / Minus

                                                                        
Query: 13   tatattaacaaaacatgcccagcaatngnttggatgcgatgcgg-acttaggta-----g 66
            |||||||||||||||||||||||||| | ||||||||||||||| |||||||||     |
Sbjct: 1595 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagg 1536

                                                                        
Query: 67   gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgccgnc 126
             |||||||||||||||||||  ||||||||||||||||||||||||||||||||| || |
Sbjct: 1535 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 1477

                                                         
Query: 127  gctccttgccgttgggtcgtagttcttggcattttggacggtgca 171
             ||||| |||||||||||| ||||||||||| | ||| |||||||
Sbjct: 1476 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgca 1432
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  111 bits (56), Expect = 7e-22
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                        
Query: 85   aaagtggcatgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtc 144
            ||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                               
Query: 145  gtagttcttggcattttggacggtgcaaccttccg 179
            | ||||||||||||   || |||| ||||||||||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccg 1433
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  111 bits (56), Expect = 7e-22
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                        
Query: 85   aaagtggcatgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtc 144
            ||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                               
Query: 145  gtagttcttggcattttggacggtgcaaccttccg 179
            | ||||||||||||   || |||| ||||||||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccg 1395
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                          
Query: 94     tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
              |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                        
Query: 154    ggcattttggacggtgcaaccttccg 179
              ||||    || |||||||||||||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccg 107243



 Score = 40.1 bits (20), Expect = 2.2
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                     
Query: 112    gcagctgccgccgncgctccttgccgttgggtcgtagtt 150
              |||||||||| || ||||||| || || |||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 112091
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                         
Query: 94    tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
             |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                       
Query: 154   ggcattttggacggtgcaaccttccg 179
             ||||    || |||||||||||||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccg 29124



 Score = 40.1 bits (20), Expect = 2.2
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                    
Query: 112   gcagctgccgccgncgctccttgccgttgggtcgtagtt 150
             |||||||||| || ||||||| || || |||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 33968
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccg 1435
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccg 1345
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 94       tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
                |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                          
Query: 154      ggcattttggacggtgcaaccttccg 179
                ||||    || |||||||||||||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccg 28302386



 Score = 40.1 bits (20), Expect = 2.2
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                       
Query: 112      gcagctgccgccgncgctccttgccgttgggtcgtagtt 150
                |||||||||| || ||||||| || || |||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28307230
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccg 1429
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccg 1467
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccg 1466
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccg 1250
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 94       tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
                |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                          
Query: 154      ggcattttggacggtgcaaccttccg 179
                ||||    || |||||||||||||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccg 28284835



 Score = 40.1 bits (20), Expect = 2.2
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                       
Query: 112      gcagctgccgccgncgctccttgccgttgggtcgtagtt 150
                |||||||||| || ||||||| || || |||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28289679
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccg 1471
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  101 bits (51), Expect = 7e-19
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccg 1380
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                       
Query: 100 aaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttcttggcatt 159
           |||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                               
Query: 160 ttggacggtgcaaccttccg 179
             || |||||||||||||||
Sbjct: 33  agggtcggtgcaaccttccg 14
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 76/86 (88%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 94   tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
            |||||||||||||||||||||||||||| || ||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                      
Query: 154  ggcattttggacggtgcaaccttccg 179
            ||||    || |||||||||||||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccg 1478
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 94  tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
           |||||||||| | ||||||||||||||| || ||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

               
Query: 154 ggca 157
           ||||
Sbjct: 75  ggca 72
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                           
Query: 94      tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
               |||||| ||||||||||||||| ||| | ||  |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                         
Query: 154     ggcattttggacggtgcaaccttccg 179
               ||||    || |||||||||||||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccg 4541328
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| |||||||||||  || ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 164  acggtgcaaccttc 177
             |||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| |||||||||||  || ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 164  acggtgcaaccttc 177
             |||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| |||||||||||  || ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 164  acggtgcaaccttc 177
             |||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttcttggcattttgg 163
            ||||| |||||||||||  || ||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 164  acggtgcaaccttc 177
             |||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                         
Query: 94    tgcttaaaaggtgtaaaggcagctgccgccgncgctccttgccgttgggtcgtagttctt 153
             |||||| ||||||||||||||| ||| | ||  |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                       
Query: 154   ggcattttggacggtgcaaccttccg 179
             ||||    || |||||||||||||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccg 84702
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 70      aaacatcagatattaaaagtg 90
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 70      aaacatcagatattaaaagtg 90
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     aaacatcagatattaaaagtg 90
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AC105982.10| Mus musculus chromosome 15, clone RP24-159I1, complete sequence
          Length = 168547

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   gtgtaaaggcagctgccgcc 123
             ||||||||||||||||||||
Sbjct: 12735 gtgtaaaggcagctgccgcc 12754
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tcagatattaaaagtggcat 94
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tcagatattaaaagtggcat 94
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tcagatattaaaagtggcat 94
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tggcatgcttaaaaggtgta 108
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     atcagatattaaaagtggcatgct 97
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852
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>ref|XM_865917.1| PREDICTED: Bos taurus similar to TBC1 domain family, member 10B,
            transcript variant 2 (LOC513858), mRNA
          Length = 3869

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 111  ggcagctgccgccgncgctcct 132
            |||||||||||||| |||||||
Sbjct: 1950 ggcagctgccgccggcgctcct 1929
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>ref|XM_591615.2| PREDICTED: Bos taurus similar to TBC1 domain family, member 10B,
            transcript variant 1 (LOC513858), mRNA
          Length = 3848

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 111  ggcagctgccgccgncgctcct 132
            |||||||||||||| |||||||
Sbjct: 1929 ggcagctgccgccggcgctcct 1908
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>gb|AF371886.1| Uncultured bacterium clone p-219-o5 16S ribosomal RNA gene, partial
           sequence
          Length = 1463

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 67  gtaaaacatcagatattaa 85
           |||||||||||||||||||
Sbjct: 183 gtaaaacatcagatattaa 165
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>gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence
          Length = 181948

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     taggtaggtaaaacatcag 78
              |||||||||||||||||||
Sbjct: 151143 taggtaggtaaaacatcag 151125
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>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 80     tattaaaagtggcatgcttaaaa 102
              |||||||||||||| ||||||||
Sbjct: 167602 tattaaaagtggcaggcttaaaa 167580
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>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3,
             complete sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    aaagtggcatgcttaaaag 103
             |||||||||||||||||||
Sbjct: 15943 aaagtggcatgcttaaaag 15925
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>gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome 14, complete sequence
          Length = 171069

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     taggtaaaacatcagatat 82
              |||||||||||||||||||
Sbjct: 126442 taggtaaaacatcagatat 126424
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>emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230-139I21, complete sequence
          Length = 212885

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 70   aaacatcagatattaaaag 88
            |||||||||||||||||||
Sbjct: 3858 aaacatcagatattaaaag 3876
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>gb|AC129290.4| Mus musculus BAC clone RP24-489L4 from chromosome 6, complete sequence
          Length = 188132

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    gtaaaacatcagatattaa 85
             |||||||||||||||||||
Sbjct: 48495 gtaaaacatcagatattaa 48513
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>gb|AC004519.1| Homo sapiens BAC clone CTB-41H4 from 7, complete sequence
          Length = 107889

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 77    agatattaaaagtggcatgctta 99
             |||| ||||||||||||||||||
Sbjct: 51524 agatgttaaaagtggcatgctta 51546
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>emb|BX942833.8| Zebrafish DNA sequence from clone DKEY-177F17 in linkage group 20
            Contains part of the gene for a novel protein similar to
            rat kinase D-interacting substance of 220 kDa
            (RGD:619949), complete sequence
          Length = 42729

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   tatattaacaaaacatgcc 31
            |||||||||||||||||||
Sbjct: 9802 tatattaacaaaacatgcc 9820
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>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence
          Length = 208009

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 80     tattaaaagtggcatgcttaaaa 102
              |||||||||||||| ||||||||
Sbjct: 193364 tattaaaagtggcaggcttaaaa 193386
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>emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in linkage group 22,
              complete sequence
          Length = 191642

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     taggtaggtaaaacatcag 78
              |||||||||||||||||||
Sbjct: 151077 taggtaggtaaaacatcag 151059
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 48      gcgatgcggacttaggtag 66
               |||||||||||||||||||
Sbjct: 2937451 gcgatgcggacttaggtag 2937469
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>dbj|AK080739.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930027O03 product:weakly similar to L1
           RETROTRANSPOSON, TF SUBFAMILY L1MD-TF29, PARTIAL
           SEQUENCE [Mus musculus domesticus], full insert sequence
          Length = 4205

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 66  ggtaaaacatcagatatta 84
           |||||||||||||||||||
Sbjct: 712 ggtaaaacatcagatatta 694
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>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence
          Length = 157417

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    aaaacatcagatattaaaa 87
             |||||||||||||||||||
Sbjct: 68501 aaaacatcagatattaaaa 68519
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>gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosome 14, complete sequence
          Length = 212894

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 64     taggtaaaacatcagatat 82
              |||||||||||||||||||
Sbjct: 200300 taggtaaaacatcagatat 200318
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>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete
             sequence
          Length = 177886

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    ggtaaaacatcagatatta 84
             |||||||||||||||||||
Sbjct: 55690 ggtaaaacatcagatatta 55708
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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 69     aaaacatcagatattaaaa 87
              |||||||||||||||||||
Sbjct: 109395 aaaacatcagatattaaaa 109413
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>emb|CR937049.3| CH230-323M7, complete sequence
          Length = 198674

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    aaacatcagatattaaaag 88
             |||||||||||||||||||
Sbjct: 21429 aaacatcagatattaaaag 21411


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,200,427
Number of Sequences: 3902068
Number of extensions: 1200427
Number of successful extensions: 84786
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84522
Number of HSP's gapped (non-prelim): 244
length of query: 179
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 157
effective length of database: 17,147,199,772
effective search space: 2692110364204
effective search space used: 2692110364204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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