ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK062123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 276 7e-71
2dbj|AK068197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
3dbj|AK064782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
5dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
6dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
7gb|AY466159.1| Zea mays DEAD box RNA helicase (DRH1) mRNA, compl... 165 2e-37
8ref|XM_463609.1| Oryza sativa (japonica cultivar-group), predic... 109 1e-20
9ref|NM_203256.1| Arabidopsis thaliana ATP binding / ATP-dependen... 62 2e-06
10emb|AJ010476.1|ATH010476 Arabidopsis thaliana mRNA for DEAD box ... 62 2e-06
11emb|BX832051.1|CNS09YVO Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
12gb|AY107918.1| Zea mays PCO117725 mRNA sequence 44 0.49
13ref|NM_125706.2| Arabidopsis thaliana ATP binding / ATP-dependen... 42 2.0
14gb|AC120020.9| Mus musculus chromosome 16, clone RP24-251L14, co... 42 2.0
15emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 2.0
16ref|XM_730903.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 2.0
17gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosom... 42 2.0
18gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosom... 42 2.0
19gb|AY060589.1| Arabidopsis thaliana AT5g63120/MDC12_8 mRNA, comp... 42 2.0
20dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.0
21gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-8... 42 2.0
22gb|AC154284.1| Mus musculus BAC clone RP23-452N24 from 16, compl... 42 2.0
23ref|NM_120078.2| Arabidopsis thaliana SEC14 AT4G39180 (SEC14) mR... 40 7.7
24ref|XM_588033.2| PREDICTED: Bos taurus similar to ATP-dependent ... 40 7.7
25ref|XM_877770.1| PREDICTED: Bos taurus similar to ATP-dependent ... 40 7.7
26gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, compl... 40 7.7
27gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 7.7
28emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, ... 40 7.7
29emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BA... 40 7.7
30gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, com... 40 7.7
31ref|XM_397167.2| PREDICTED: Apis mellifera similar to CG6375-PB,... 40 7.7
32gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 7.7
33dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
34gb|AC140780.3| Mus musculus BAC clone RP24-500J16 from chromosom... 40 7.7
35dbj|AK117291.1| Arabidopsis thaliana At4g39180 mRNA for SEC14 - ... 40 7.7
36gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromoso... 40 7.7
37gb|AC157951.2| Gallus gallus BAC clone CH261-173J5 from chromoso... 40 7.7
38gb|AC150747.2| Mus musculus BAC clone RP23-249E15 from 5, comple... 40 7.7
39emb|AL645806.9| Mouse DNA sequence from clone CT7-316H20 on chro... 40 7.7
40emb|AL732466.7| Mouse DNA sequence from clone RP23-149G14 on chr... 40 7.7
41emb|AL645759.11| Mouse DNA sequence from clone RP23-441I10 on ch... 40 7.7 
>dbj|AK062123.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D03, full
           insert sequence
          Length = 845

 Score =  276 bits (139), Expect = 7e-71
 Identities = 282/332 (84%), Gaps = 3/332 (0%)
 Strand = Plus / Minus

                                                                       
Query: 238 ccccttgaccggaaattacctnctnctcccatggaaccagctgacttggacatagcttct 297
           ||||||||||||||||| ||| ||   ||||| ||||  || || || | ||||| ||||
Sbjct: 541 ccccttgaccggaaattgcctcct---cccatagaactggcagatttagccatagattct 485

                                                                       
Query: 298 agcgctggattcacaacctgtccagcttcacgcaagatcttaacgagattccttgaatat 357
           |||||||||||||||||||| |||||||| | |||||||||||| |||||||| ||  ||
Sbjct: 484 agcgctggattcacaacctggccagcttccctcaagatcttaacaagattcctggagaat 425

                                                                       
Query: 358 tttgaattggaatgggtgaagaacgtgaaggccattncagtancaccagcacggccagnt 417
           |||| ||||||  | ||||| || ||||| ||  || || || ||||||| ||||||| |
Sbjct: 424 tttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagcgcggccagtt 365

                                                                       
Query: 418 ngacctatcctgtgaatataatcttngatagttgtcgggaaatcaaaattaatcacgcac 477
            ||||||| ||||||||||||||||  | |||||| || ||||||||||| ||||| |||
Sbjct: 364 cgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatttatcacacac 305

                                                                       
Query: 478 ttaatatccttcacatcaagaccacgtgccgctacatctgtggcngncattataggactc 537
           ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| 
Sbjct: 304 ttaatatccttgacatcaagaccacgtgccgctacatctgtggcagccattataggactt 245

                                           
Query: 538 ttcccattcttaaactctgccngaacatagtc 569
           |||||| |||| ||||||||| ||||||||||
Sbjct: 244 ttcccactcttgaactctgccagaacatagtc 213
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>dbj|AK068197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140N02, full
            insert sequence
          Length = 4012

 Score =  168 bits (85), Expect = 1e-38
 Identities = 213/257 (82%), Gaps = 3/257 (1%)
 Strand = Plus / Minus

                                                                        
Query: 238  ccccttgaccggaaattacctnctnctcccatggaaccagctgacttggacatagcttct 297
            ||||||||||||||||| ||| ||   ||||| ||||  || || || | ||||| ||||
Sbjct: 2027 ccccttgaccggaaattgcctcct---cccatagaactggcagatttagccatagattct 1971

                                                                        
Query: 298  agcgctggattcacaacctgtccagcttcacgcaagatcttaacgagattccttgaatat 357
            |||||||||||||||||||| |||||||| | |||||||||||| |||||||| ||  ||
Sbjct: 1970 agcgctggattcacaacctggccagcttccctcaagatcttaacaagattcctggagaat 1911

                                                                        
Query: 358  tttgaattggaatgggtgaagaacgtgaaggccattncagtancaccagcacggccagnt 417
            |||| ||||||  | ||||| || ||||| ||  || || || ||||||| ||||||| |
Sbjct: 1910 tttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagcgcggccagtt 1851

                                                                        
Query: 418  ngacctatcctgtgaatataatcttngatagttgtcgggaaatcaaaattaatcacgcac 477
             ||||||| ||||||||||||||||  | |||||| || ||||||||||| ||||| |||
Sbjct: 1850 cgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatttatcacacac 1791

                             
Query: 478  ttaatatccttcacatc 494
            ||||||||||| |||||
Sbjct: 1790 ttaatatccttgacatc 1774



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                       
Query: 494 caagaccacgtgccgctacatctgtggcngncattataggactcttcccattcttaaact 553
           |||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||||
Sbjct: 510 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 451

                           
Query: 554 ctgccngaacatagtc 569
           ||||| ||||||||||
Sbjct: 450 ctgccagaacatagtc 435
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>dbj|AK064782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B12, full
            insert sequence
          Length = 3413

 Score =  168 bits (85), Expect = 1e-38
 Identities = 213/257 (82%), Gaps = 3/257 (1%)
 Strand = Plus / Minus

                                                                        
Query: 238  ccccttgaccggaaattacctnctnctcccatggaaccagctgacttggacatagcttct 297
            ||||||||||||||||| ||| ||   ||||| ||||  || || || | ||||| ||||
Sbjct: 3058 ccccttgaccggaaattgcctcct---cccatagaactggcagatttagccatagattct 3002

                                                                        
Query: 298  agcgctggattcacaacctgtccagcttcacgcaagatcttaacgagattccttgaatat 357
            |||||||||||||||||||| |||||||| | |||||||||||| |||||||| ||  ||
Sbjct: 3001 agcgctggattcacaacctggccagcttccctcaagatcttaacaagattcctggagaat 2942

                                                                        
Query: 358  tttgaattggaatgggtgaagaacgtgaaggccattncagtancaccagcacggccagnt 417
            |||| ||||||  | ||||| || ||||| ||  || || || ||||||| ||||||| |
Sbjct: 2941 tttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagcgcggccagtt 2882

                                                                        
Query: 418  ngacctatcctgtgaatataatcttngatagttgtcgggaaatcaaaattaatcacgcac 477
             ||||||| ||||||||||||||||  | |||||| || ||||||||||| ||||| |||
Sbjct: 2881 cgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatttatcacacac 2822

                             
Query: 478  ttaatatccttcacatc 494
            ||||||||||| |||||
Sbjct: 2821 ttaatatccttgacatc 2805



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                        
Query: 494  caagaccacgtgccgctacatctgtggcngncattataggactcttcccattcttaaact 553
            |||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||||
Sbjct: 1542 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 1483

                            
Query: 554  ctgccngaacatagtc 569
            ||||| ||||||||||
Sbjct: 1482 ctgccagaacatagtc 1467
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  167 bits (84), Expect = 5e-38
 Identities = 175/207 (84%)
 Strand = Plus / Plus

                                                                            
Query: 288      catagcttctagcgctggattcacaacctgtccagcttcacgcaagatcttaacgagatt 347
                ||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||
Sbjct: 39682140 catagattctagcgctggattcacaacctggccagcttccctcaagatcttaacaagatt 39682199

                                                                            
Query: 348      ccttgaatattttgaattggaatgggtgaagaacgtgaaggccattncagtancaccagc 407
                ||| ||  |||||| ||||||  | ||||| || ||||| ||  || || || |||||||
Sbjct: 39682200 cctggagaattttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagc 39682259

                                                                            
Query: 408      acggccagntngacctatcctgtgaatataatcttngatagttgtcgggaaatcaaaatt 467
                 ||||||| | ||||||| ||||||||||||||||  | |||||| || |||||||||||
Sbjct: 39682260 gcggccagttcgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatt 39682319

                                           
Query: 468      aatcacgcacttaatatccttcacatc 494
                 ||||| |||||||||||||| |||||
Sbjct: 39682320 tatcacacacttaatatccttgacatc 39682346



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                            
Query: 494      caagaccacgtgccgctacatctgtggcngncattataggactcttcccattcttaaact 553
                |||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||||
Sbjct: 39683609 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 39683668

                                
Query: 554      ctgccngaacatagtc 569
                ||||| ||||||||||
Sbjct: 39683669 ctgccagaacatagtc 39683684



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 115      cttcatctttctgtcttctccagc 138
                |||||||||||| |||||||||||
Sbjct: 29115681 cttcatctttctatcttctccagc 29115704
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>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456E05
          Length = 173699

 Score =  167 bits (84), Expect = 5e-38
 Identities = 175/207 (84%)
 Strand = Plus / Plus

                                                                          
Query: 288    catagcttctagcgctggattcacaacctgtccagcttcacgcaagatcttaacgagatt 347
              ||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||
Sbjct: 163096 catagattctagcgctggattcacaacctggccagcttccctcaagatcttaacaagatt 163155

                                                                          
Query: 348    ccttgaatattttgaattggaatgggtgaagaacgtgaaggccattncagtancaccagc 407
              ||| ||  |||||| ||||||  | ||||| || ||||| ||  || || || |||||||
Sbjct: 163156 cctggagaattttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagc 163215

                                                                          
Query: 408    acggccagntngacctatcctgtgaatataatcttngatagttgtcgggaaatcaaaatt 467
               ||||||| | ||||||| ||||||||||||||||  | |||||| || |||||||||||
Sbjct: 163216 gcggccagttcgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatt 163275

                                         
Query: 468    aatcacgcacttaatatccttcacatc 494
               ||||| |||||||||||||| |||||
Sbjct: 163276 tatcacacacttaatatccttgacatc 163302



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                          
Query: 494    caagaccacgtgccgctacatctgtggcngncattataggactcttcccattcttaaact 553
              |||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||||
Sbjct: 164565 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 164624

                              
Query: 554    ctgccngaacatagtc 569
              ||||| ||||||||||
Sbjct: 164625 ctgccagaacatagtc 164640
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>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0470A12
          Length = 185095

 Score =  167 bits (84), Expect = 5e-38
 Identities = 175/207 (84%)
 Strand = Plus / Plus

                                                                         
Query: 288   catagcttctagcgctggattcacaacctgtccagcttcacgcaagatcttaacgagatt 347
             ||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||
Sbjct: 33039 catagattctagcgctggattcacaacctggccagcttccctcaagatcttaacaagatt 33098

                                                                         
Query: 348   ccttgaatattttgaattggaatgggtgaagaacgtgaaggccattncagtancaccagc 407
             ||| ||  |||||| ||||||  | ||||| || ||||| ||  || || || |||||||
Sbjct: 33099 cctggagaattttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagc 33158

                                                                         
Query: 408   acggccagntngacctatcctgtgaatataatcttngatagttgtcgggaaatcaaaatt 467
              ||||||| | ||||||| ||||||||||||||||  | |||||| || |||||||||||
Sbjct: 33159 gcggccagttcgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatt 33218

                                        
Query: 468   aatcacgcacttaatatccttcacatc 494
              ||||| |||||||||||||| |||||
Sbjct: 33219 tatcacacacttaatatccttgacatc 33245



 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/76 (92%)
 Strand = Plus / Plus

                                                                         
Query: 494   caagaccacgtgccgctacatctgtggcngncattataggactcttcccattcttaaact 553
             |||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||||
Sbjct: 34508 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 34567

                             
Query: 554   ctgccngaacatagtc 569
             ||||| ||||||||||
Sbjct: 34568 ctgccagaacatagtc 34583
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>gb|AY466159.1| Zea mays DEAD box RNA helicase (DRH1) mRNA, complete cds
          Length = 2214

 Score =  165 bits (83), Expect = 2e-37
 Identities = 146/169 (86%)
 Strand = Plus / Minus

                                                                        
Query: 401  caccagcacggccagntngacctatcctgtgaatataatcttngatagttgtcgggaaat 460
            ||||||||||||||| | ||||||||||||||||||||||||  | |||||| || ||||
Sbjct: 1561 caccagcacggccagttcgacctatcctgtgaatataatcttcaagagttgttggaaaat 1502

                                                                        
Query: 461  caaaattaatcacgcacttaatatccttcacatcaagaccacgtgccgctacatctgtgg 520
            || |||| ||||| ||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct: 1501 cataatttatcacacactttatgtccttcacatcaagaccacgtgctgccacatctgtgg 1442

                                                             
Query: 521  cngncattataggactcttcccattcttaaactctgccngaacatagtc 569
            | | |||||| || ||||| ||  |||||||||||||  ||||||||||
Sbjct: 1441 cagccattatggggctcttgccgctcttaaactctgcaagaacatagtc 1393
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>ref|XM_463609.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1443

 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                        
Query: 494  caagaccacgtgccgctacatctgtggcngncattataggactcttcccattcttaaact 553
            |||||||||||||||||||||||||||| | |||||||||||| |||||| |||| ||||
Sbjct: 1405 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 1346

                            
Query: 554  ctgccngaacatagtc 569
            ||||| ||||||||||
Sbjct: 1345 ctgccagaacatagtc 1330
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>ref|NM_203256.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT5G63120 transcript variant
            AT5G63120.2 mRNA, complete cds
          Length = 2185

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 454  gggaaatcaaaattaatcacgcacttaatatccttcacatcaagaccacgtgccgctaca 513
            ||||||||| |||||| ||| || ||||| |||||||||||||| || | ||| ||||||
Sbjct: 1657 gggaaatcataattaaccacacatttaatgtccttcacatcaagtccccttgctgctaca 1598

                             
Query: 514  tctgtggcngncattat 530
            || ||||| | ||||||
Sbjct: 1597 tcagtggcagtcattat 1581
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>emb|AJ010476.1|ATH010476 Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH30
          Length = 790

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 454 gggaaatcaaaattaatcacgcacttaatatccttcacatcaagaccacgtgccgctaca 513
           ||||||||| |||||| ||| || ||||| |||||||||||||| || | ||| ||||||
Sbjct: 696 gggaaatcataattaaccacacatttaatgtccttcacatcaagtccccttgctgctaca 637

                            
Query: 514 tctgtggcngncattat 530
           || ||||| | ||||||
Sbjct: 636 tcagtggcagtcattat 620
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>emb|BX832051.1|CNS09YVO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH48ZH12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2119

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 454  gggaaatcaaaattaatcacgcacttaatatccttcacatcaagaccacgtgccgctaca 513
            ||||||||| |||||| ||| || ||||| |||||||||||||| || | ||| ||||||
Sbjct: 1645 gggaaatcataattaaccacacatttaatgtccttcacatcaagtccccttgctgctaca 1586

                             
Query: 514  tctgtggcngncattat 530
            || ||||| | ||||||
Sbjct: 1585 tcagtggcagtcattat 1569
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>gb|AY107918.1| Zea mays PCO117725 mRNA sequence
          Length = 653

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 304 ggattcacaacctgtccagcttcacgcaagatcttaacgagattccttga 353
           ||||||||||| || |||||||| ||||  ||||| || |||||||||||
Sbjct: 97  ggattcacaacttggccagcttctcgcagaatcttcactagattccttga 48
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>ref|NM_125706.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT5G63120 transcript variant
            AT5G63120.1 mRNA, complete cds
          Length = 2372

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 454  gggaaatcaaaattaatcacgcacttaatatccttcacatc 494
            ||||||||| |||||| ||| || ||||| |||||||||||
Sbjct: 1844 gggaaatcataattaaccacacatttaatgtccttcacatc 1804
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>gb|AC120020.9| Mus musculus chromosome 16, clone RP24-251L14, complete sequence
          Length = 153700

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   taaaacttcatctttctgtct 130
             |||||||||||||||||||||
Sbjct: 99085 taaaacttcatctttctgtct 99105
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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 490     acatcaagaccacgtgccgctacatctgt 518
               ||||| ||||||||||||||||| |||||
Sbjct: 1025780 acatctagaccacgtgccgctacgtctgt 1025808
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>ref|XM_730903.1| Plasmodium chabaudi chabaudi hypothetical protein (PC107933.00.0)
           partial mRNA
          Length = 212

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 345 attccttgaatattttgaatt 365
           |||||||||||||||||||||
Sbjct: 123 attccttgaatattttgaatt 103
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>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence
          Length = 191274

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 460   tcaaaattaatcacgcacttaatat 484
             ||||||||||||| |||||||||||
Sbjct: 50951 tcaaaattaatcaagcacttaatat 50927
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>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence
          Length = 226160

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 460    tcaaaattaatcacgcacttaatat 484
              ||||||||||||| |||||||||||
Sbjct: 212924 tcaaaattaatcaagcacttaatat 212900
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>gb|AY060589.1| Arabidopsis thaliana AT5g63120/MDC12_8 mRNA, complete cds
          Length = 2366

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 454  gggaaatcaaaattaatcacgcacttaatatccttcacatc 494
            ||||||||| |||||| ||| || ||||| |||||||||||
Sbjct: 1845 gggaaatcataattaaccacacatttaatgtccttcacatc 1805
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>dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12
          Length = 81662

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 454   gggaaatcaaaattaatcacgcacttaatatccttcacatc 494
             ||||||||| |||||| ||| || ||||| |||||||||||
Sbjct: 28010 gggaaatcataattaaccacacatttaatgtccttcacatc 28050
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>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete sequence
          Length = 132817

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 49/59 (83%)
 Strand = Plus / Minus

                                                                         
Query: 498    accacgtgccgctacatctgtggcngncattataggactcttcccattcttaaactctg 556
              |||||| || || |||||||| || | ||||||||||||||| |||   ||||||||||
Sbjct: 111830 accacgagctgcaacatctgttgcagtcattataggactctttccagatttaaactctg 111772
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>gb|AC154284.1| Mus musculus BAC clone RP23-452N24 from 16, complete sequence
          Length = 182088

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 110    taaaacttcatctttctgtct 130
              |||||||||||||||||||||
Sbjct: 174687 taaaacttcatctttctgtct 174707
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>ref|NM_120078.2| Arabidopsis thaliana SEC14 AT4G39180 (SEC14) mRNA, complete cds
          Length = 2321

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 114  acttcatctttctgtcttctccag 137
            ||||||||||||| ||||||||||
Sbjct: 2191 acttcatctttctatcttctccag 2168
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>ref|XM_588033.2| PREDICTED: Bos taurus similar to ATP-dependent RNA helicase ROK1
            isoform b, transcript variant 1 (LOC510826), mRNA
          Length = 2501

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                      
Query: 412  ccagntngacctatcctgtgaatata 437
            |||| | |||||||||||||||||||
Sbjct: 1491 ccagttcgacctatcctgtgaatata 1466
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>ref|XM_877770.1| PREDICTED: Bos taurus similar to ATP-dependent RNA helicase ROK1
            isoform b, transcript variant 2 (LOC510826), mRNA
          Length = 2560

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                      
Query: 412  ccagntngacctatcctgtgaatata 437
            |||| | |||||||||||||||||||
Sbjct: 1491 ccagttcgacctatcctgtgaatata 1466
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>gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, complete sequence
          Length = 199607

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   ttgaatattttgaattggaatggg 373
             ||||||||||||||| ||||||||
Sbjct: 69375 ttgaatattttgaatgggaatggg 69398
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 490    acatcaagaccacgtgccgctacatctgtggc 521
              |||||||||||||| ||||| ||||| |||||
Sbjct: 411870 acatcaagaccacgggccgcgacatcggtggc 411839
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>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90
          Length = 198987

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 114    acttcatctttctgtcttctccag 137
              ||||||||||||| ||||||||||
Sbjct: 158060 acttcatctttctatcttctccag 158083
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>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project)
          Length = 89035

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   acttcatctttctgtcttctccag 137
             ||||||||||||| ||||||||||
Sbjct: 26596 acttcatctttctatcttctccag 26619
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>gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, complete sequence
          Length = 150740

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 344    gattccttgaatattttgaattgg 367
              |||| |||||||||||||||||||
Sbjct: 129645 gatttcttgaatattttgaattgg 129622
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>ref|XM_397167.2| PREDICTED: Apis mellifera similar to CG6375-PB, isoform B
           (LOC413727), mRNA
          Length = 1308

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 492 atcaagaccacgtgccgctacatc 515
           ||||||||||||||| ||||||||
Sbjct: 741 atcaagaccacgtgcagctacatc 718
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 362     aattggaatgggtgaagaac 381
               ||||||||||||||||||||
Sbjct: 2927481 aattggaatgggtgaagaac 2927500
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>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   cttcatctttctgtcttctccagc 138
             |||||||||||| |||||||||||
Sbjct: 76047 cttcatctttctatcttctccagc 76070
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>gb|AC140780.3| Mus musculus BAC clone RP24-500J16 from chromosome 5, complete sequence
          Length = 166260

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    ttccttgaatattttgaatt 365
              ||||||||||||||||||||
Sbjct: 166066 ttccttgaatattttgaatt 166085
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>dbj|AK117291.1| Arabidopsis thaliana At4g39180 mRNA for SEC14 - like
            protein(At4g39180), complete cds, clone: RAFL16-84-P13
          Length = 2426

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 114  acttcatctttctgtcttctccag 137
            ||||||||||||| ||||||||||
Sbjct: 2296 acttcatctttctatcttctccag 2273
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>gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromosome unknown, complete
              sequence
          Length = 228494

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    tatccttcacatcaagacca 501
              ||||||||||||||||||||
Sbjct: 185673 tatccttcacatcaagacca 185692
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>gb|AC157951.2| Gallus gallus BAC clone CH261-173J5 from chromosome unknown, complete
              sequence
          Length = 206432

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 482    tatccttcacatcaagacca 501
              ||||||||||||||||||||
Sbjct: 151653 tatccttcacatcaagacca 151634
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>gb|AC150747.2| Mus musculus BAC clone RP23-249E15 from 5, complete sequence
          Length = 209364

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ttccttgaatattttgaatt 365
              ||||||||||||||||||||
Sbjct: 161428 ttccttgaatattttgaatt 161409
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>emb|AL645806.9| Mouse DNA sequence from clone CT7-316H20 on chromosome 3, complete
              sequence
          Length = 129775

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     atttaatttaatgcctaaat 100
              ||||||||||||||||||||
Sbjct: 126262 atttaatttaatgcctaaat 126281
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>emb|AL732466.7| Mouse DNA sequence from clone RP23-149G14 on chromosome 2, complete
              sequence
          Length = 172535

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    gataaaacttcatctttctg 127
              ||||||||||||||||||||
Sbjct: 141202 gataaaacttcatctttctg 141183
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>emb|AL645759.11| Mouse DNA sequence from clone RP23-441I10 on chromosome 3, complete
             sequence
          Length = 118244

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    atttaatttaatgcctaaat 100
             ||||||||||||||||||||
Sbjct: 49179 atttaatttaatgcctaaat 49198


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,719,594
Number of Sequences: 3902068
Number of extensions: 3719594
Number of successful extensions: 71951
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71827
Number of HSP's gapped (non-prelim): 124
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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