ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC119734.7| Homo sapiens 3 BAC RP11-305D6 (Roswell Park Cance... 44 0.14
2emb|BX901908.8| Zebrafish DNA sequence from clone DKEY-268B12 in... 44 0.14
3emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 ... 44 0.14
4gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, com... 42 0.54
5dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, c... 42 0.54
6dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, c... 42 0.54
7gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 42 0.54
8gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y... 42 0.54
9ref|XM_476950.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.1
10gb|AC087214.4| Papio anubis clone RP41-150K7, complete sequence 40 2.1
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
12dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
13dbj|AP005877.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
14dbj|AK071758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
15gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold 38 8.4
16gb|AC165380.3| Colobus guereza clone CH272-85C5, complete sequence 38 8.4
17gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 38 8.4
18gb|AC145494.3| Gorilla gorilla gorilla clone CH255-100P16, compl... 38 8.4
19gb|AC002543.1| Homo sapiens BAC clone CTA-300C3 from 7, complete... 38 8.4
20gb|AC148058.4| Callicebus moloch clone LB5-358H21, complete sequ... 38 8.4
21gb|AC146768.3| Callithrix jacchus clone CH259-491G15, complete s... 38 8.4
22gb|AF500649.1| Mus musculus olfactory receptor GA_x5J8B7W3EKE-45... 38 8.4
23gb|AC166601.4| Nomascus leucogenys leucogenys clone CH271-401M10... 38 8.4
24gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, c... 38 8.4
25gb|AC068758.12| Homo sapiens 3 BAC RP11-285C9 (Roswell Park Canc... 38 8.4
26gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 38 8.4
27ref|NG_001733.1| Mus musculus olfactory receptor GA_x5J8B7W3EKE-... 38 8.4
28gb|AC153860.4| Mus musculus 6 BAC RP23-170C11 (Roswell Park Canc... 38 8.4
29gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cance... 38 8.4
30gb|AC146925.5| Callithrix jacchus clone CH259-254J2, complete se... 38 8.4
31gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 38 8.4
32gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 38 8.4
33gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold 38 8.4
34gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence 38 8.4
35gb|AC107815.11| Mus musculus chromosome 7, clone RP23-114A6, com... 38 8.4
36gb|AC152894.3| Saimiri boliviensis boliviensis clone CH254-450C1... 38 8.4
37gb|AC151371.4| Aotus nancymaae clone CH258-333O11, complete sequ... 38 8.4
38gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3... 38 8.4
39gb|DP000019.1| Callicebus moloch target 1 genomic scaffold 38 8.4
40emb|AL773586.6| Mouse DNA sequence from clone RP23-18P19 on chro... 38 8.4
41gb|AC138724.3| Cercopithecus aethiops clone CH252-200P12, comple... 38 8.4 
>gb|AC119734.7| Homo sapiens 3 BAC RP11-305D6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109642

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 39    agagtagcatgaaatggaaaga 60
             ||||||||||||||||||||||
Sbjct: 70483 agagtagcatgaaatggaaaga 70462
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>emb|BX901908.8| Zebrafish DNA sequence from clone DKEY-268B12 in linkage group 4,
             complete sequence
          Length = 210697

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 82    tactttttaagctgcagatgttacaa 107
             |||||||||||||| |||||||||||
Sbjct: 43628 tactttttaagctgaagatgttacaa 43603
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>emb|AL954657.14| Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4,
             complete sequence
          Length = 200352

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 82    tactttttaagctgcagatgttacaa 107
             |||||||||||||| |||||||||||
Sbjct: 83100 tactttttaagctgaagatgttacaa 83075
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>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence
          Length = 182113

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    aagagtagcatgaaatggaaa 58
             |||||||||||||||||||||
Sbjct: 58493 aagagtagcatgaaatggaaa 58513
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>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   aagagtagcatgaaatggaaa 58
            |||||||||||||||||||||
Sbjct: 7603 aagagtagcatgaaatggaaa 7623
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>dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, complete sequences
          Length = 204391

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 38    aagagtagcatgaaatggaaa 58
             |||||||||||||||||||||
Sbjct: 62399 aagagtagcatgaaatggaaa 62379
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 38       aagagtagcatgaaatggaaa 58
                |||||||||||||||||||||
Sbjct: 20951395 aagagtagcatgaaatggaaa 20951375
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>gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y, complete sequence
          Length = 176524

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    aagagtagcatgaaatggaaa 58
             |||||||||||||||||||||
Sbjct: 51938 aagagtagcatgaaatggaaa 51958
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>ref|XM_476950.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1279

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 128 gaacctgaggaggctgctcgtcgcatcg 155
           |||| |||||||||||||| ||||||||
Sbjct: 718 gaacttgaggaggctgctcatcgcatcg 691
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>gb|AC087214.4| Papio anubis clone RP41-150K7, complete sequence
          Length = 141415

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    ttttaagctgcagatgttac 105
             ||||||||||||||||||||
Sbjct: 84949 ttttaagctgcagatgttac 84968
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 128     gaacctgaggaggctgctcgtcgcatcg 155
               |||| |||||||||||||| ||||||||
Sbjct: 4807447 gaacttgaggaggctgctcatcgcatcg 4807474
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>dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0084L07
          Length = 127992

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 128    gaacctgaggaggctgctcgtcgcatcg 155
              |||| |||||||||||||| ||||||||
Sbjct: 125357 gaacttgaggaggctgctcatcgcatcg 125384
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>dbj|AP005877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0002L09
          Length = 146343

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 128   gaacctgaggaggctgctcgtcgcatcg 155
             |||| |||||||||||||| ||||||||
Sbjct: 81960 gaacttgaggaggctgctcatcgcatcg 81987
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>dbj|AK071758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112J01, full
           insert sequence
          Length = 1279

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 128 gaacctgaggaggctgctcgtcgcatcg 155
           |||| |||||||||||||| ||||||||
Sbjct: 718 gaacttgaggaggctgctcatcgcatcg 691
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>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold
          Length = 1952403

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 771989 ttttaagctgcagatgtta 772007
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>gb|AC165380.3| Colobus guereza clone CH272-85C5, complete sequence
          Length = 199248

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 157309 ttttaagctgcagatgtta 157327
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 114     gcaggcgtccgtgcgaacc 132
               |||||||||||||||||||
Sbjct: 3046363 gcaggcgtccgtgcgaacc 3046381
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>gb|AC145494.3| Gorilla gorilla gorilla clone CH255-100P16, complete sequence
          Length = 187132

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 155688 ttttaagctgcagatgtta 155706
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>gb|AC002543.1| Homo sapiens BAC clone CTA-300C3 from 7, complete sequence
          Length = 150147

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    ttttaagctgcagatgtta 104
             |||||||||||||||||||
Sbjct: 67934 ttttaagctgcagatgtta 67952
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>gb|AC148058.4| Callicebus moloch clone LB5-358H21, complete sequence
          Length = 151378

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    ttttaagctgcagatgtta 104
             |||||||||||||||||||
Sbjct: 90694 ttttaagctgcagatgtta 90712
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>gb|AC146768.3| Callithrix jacchus clone CH259-491G15, complete sequence
          Length = 119777

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    ttttaagctgcagatgtta 104
             |||||||||||||||||||
Sbjct: 12262 ttttaagctgcagatgtta 12280
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>gb|AF500649.1| Mus musculus olfactory receptor GA_x5J8B7W3EKE-4522784-4521912
           pseudogene, complete sequence
          Length = 873

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 83  actttttaagctgcagatg 101
           |||||||||||||||||||
Sbjct: 765 actttttaagctgcagatg 783
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>gb|AC166601.4| Nomascus leucogenys leucogenys clone CH271-401M10, complete sequence
          Length = 184404

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 86   ttttaagctgcagatgtta 104
            |||||||||||||||||||
Sbjct: 5356 ttttaagctgcagatgtta 5374
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>gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, complete sequence
          Length = 88688

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    gcatgaaatggaaagacca 63
             |||||||||||||||||||
Sbjct: 29119 gcatgaaatggaaagacca 29101
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>gb|AC068758.12| Homo sapiens 3 BAC RP11-285C9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125311

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 72     aatccaactctactttttaagct 94
              ||||||| |||||||||||||||
Sbjct: 109196 aatccaattctactttttaagct 109218
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 637378 ttttaagctgcagatgtta 637396
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>ref|NG_001733.1| Mus musculus olfactory receptor GA_x5J8B7W3EKE-4522784-4521912
           (GA_x5J8B7W3EKE-4522784-4521912) pseudogene on
           chromosome 7
          Length = 873

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 83  actttttaagctgcagatg 101
           |||||||||||||||||||
Sbjct: 765 actttttaagctgcagatg 783
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>gb|AC153860.4| Mus musculus 6 BAC RP23-170C11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 213719

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 46    catgaaatggaaagaccac 64
             |||||||||||||||||||
Sbjct: 93497 catgaaatggaaagaccac 93479
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>gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 248275

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    catgaaatggaaagaccac 64
             |||||||||||||||||||
Sbjct: 11571 catgaaatggaaagaccac 11589
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>gb|AC146925.5| Callithrix jacchus clone CH259-254J2, complete sequence
          Length = 160998

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 151450 ttttaagctgcagatgtta 151468
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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 639993 ttttaagctgcagatgtta 640011
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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 660764 ttttaagctgcagatgtta 660782
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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 608522 ttttaagctgcagatgtta 608540
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>gb|AC130184.4| Macaca mulatta clone CH250-513J21, complete sequence
          Length = 160850

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    ttttaagctgcagatgtta 104
             |||||||||||||||||||
Sbjct: 37033 ttttaagctgcagatgtta 37051
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>gb|AC107815.11| Mus musculus chromosome 7, clone RP23-114A6, complete sequence
          Length = 228068

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 83     actttttaagctgcagatg 101
              |||||||||||||||||||
Sbjct: 202768 actttttaagctgcagatg 202750
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>gb|AC152894.3| Saimiri boliviensis boliviensis clone CH254-450C11, complete sequence
          Length = 167306

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    ttttaagctgcagatgtta 104
             |||||||||||||||||||
Sbjct: 95426 ttttaagctgcagatgtta 95444
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>gb|AC151371.4| Aotus nancymaae clone CH258-333O11, complete sequence
          Length = 103418

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    ttttaagctgcagatgtta 104
             |||||||||||||||||||
Sbjct: 64165 ttttaagctgcagatgtta 64183
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>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence
          Length = 196745

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     gcatgaaatggaaagacca 63
              |||||||||||||||||||
Sbjct: 156255 gcatgaaatggaaagacca 156237
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>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold
          Length = 2105003

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 757571 ttttaagctgcagatgtta 757589
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>emb|AL773586.6| Mouse DNA sequence from clone RP23-18P19 on chromosome 2, complete
              sequence
          Length = 208141

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 33     aatacaagagtagcatgaaatggaaag 59
              ||||||||||| ||||||||| |||||
Sbjct: 148541 aatacaagagttgcatgaaattgaaag 148515
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>gb|AC138724.3| Cercopithecus aethiops clone CH252-200P12, complete sequence
          Length = 173770

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ttttaagctgcagatgtta 104
              |||||||||||||||||||
Sbjct: 133631 ttttaagctgcagatgtta 133649


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,228,263
Number of Sequences: 3902068
Number of extensions: 1228263
Number of successful extensions: 79369
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79155
Number of HSP's gapped (non-prelim): 214
length of query: 173
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 151
effective length of database: 17,147,199,772
effective search space: 2589227165572
effective search space used: 2589227165572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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