ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 40 1.4
2gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome... 38 5.5
3gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome... 38 5.5
4gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 38 5.5
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.5
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.5
7dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.5

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 90    actactcccttcgttnntaaatataa 115
             |||||||||||||||  |||||||||
Sbjct: 96969 actactcccttcgttcctaaatataa 96994



to top

>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/28 (89%)
 Strand = Plus / Plus

                                         
Query: 92    tactcccttcgttnntaaatataancat 119
             |||||||||||||  ||||||||| |||
Sbjct: 58858 tactcccttcgttcctaaatataagcat 58885



to top

>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/28 (89%)
 Strand = Plus / Plus

                                          
Query: 92     tactcccttcgttnntaaatataancat 119
              |||||||||||||  ||||||||| |||
Sbjct: 158842 tactcccttcgttcctaaatataagcat 158869



to top

>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                       
Query: 91     ctactcccttcgttnntaaatataa 115
              ||||||||||||||  |||||||||
Sbjct: 197655 ctactcccttcgtttctaaatataa 197631



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 85       actgtactactcccttcgt 103
                |||||||||||||||||||
Sbjct: 25312353 actgtactactcccttcgt 25312371



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/28 (89%)
 Strand = Plus / Plus

                                           
Query: 92      tactcccttcgttnntaaatataancat 119
               |||||||||||||  ||||||||| |||
Sbjct: 6111289 tactcccttcgttcctaaatataagcat 6111316



to top

>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0505A04
          Length = 159241

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 85     actgtactactcccttcgt 103
              |||||||||||||||||||
Sbjct: 130961 actgtactactcccttcgt 130979


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 352,146
Number of Sequences: 3902068
Number of extensions: 352146
Number of successful extensions: 20259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20215
Number of HSP's gapped (non-prelim): 44
length of query: 119
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 98
effective length of database: 17,151,101,840
effective search space: 1680807980320
effective search space used: 1680807980320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top