ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WECB_ECOLI (P27828) UDP-N-acetylglucosamine 2-epimerase (EC 5.1.... 28 5.0
2WECB_ECO57 (Q8XAR8) UDP-N-acetylglucosamine 2-epimerase (EC 5.1.... 28 5.0
3PEPX_STRA5 (Q8DXW0) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) ... 28 8.6
4PEPX_STRA3 (Q8E3H8) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) ... 28 8.6

>WECB_ECOLI (P27828) UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)|
           (UDP-GlcNAc-2-epimerase) (Bacteriophage N4 adsorption
           protein C)
          Length = 376

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 12  LRTGKIYLPYTPSCQQNSVQFTTSHIFYEAIMNHEGIWHFSPTETALLN 158
           LRTG +Y P+     +              +  H  ++HFSPTET+  N
Sbjct: 120 LRTGDLYSPWPEEANRT-------------LTGHLAMYHFSPTETSRQN 155



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>WECB_ECO57 (Q8XAR8) UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)|
           (UDP-GlcNAc-2-epimerase) (Bacteriophage N4 adsorption
           protein C)
          Length = 376

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 12  LRTGKIYLPYTPSCQQNSVQFTTSHIFYEAIMNHEGIWHFSPTETALLN 158
           LRTG +Y P+     +              +  H  ++HFSPTET+  N
Sbjct: 120 LRTGDLYSPWPEEANRT-------------LTGHLAMYHFSPTETSRQN 155



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>PEPX_STRA5 (Q8DXW0) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP)
          Length = 761

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 37  HIHRAASKILYNLQRLTFSMRPS*IMKVFGTLVLQKPHS*TKRVIIHRGASSY 195
           H++   S+++Y      ++++P  + KVF  L    P +  K + +H+G   Y
Sbjct: 451 HVNNVKSRVVYTHGLQDWNVKPRHVYKVFNAL----PQTIKKHLFLHQGQHVY 499



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>PEPX_STRA3 (Q8E3H8) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro|
           dipeptidyl-peptidase) (X-prolyl-dipeptidyl
           aminopeptidase) (X-PDAP)
          Length = 761

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 37  HIHRAASKILYNLQRLTFSMRPS*IMKVFGTLVLQKPHS*TKRVIIHRGASSY 195
           H++   S+++Y      ++++P  + KVF  L    P +  K + +H+G   Y
Sbjct: 451 HVNNVKSRVVYTHGLQDWNVKPRHVYKVFNAL----PQTIKKHLFLHQGQHVY 499


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,687,826
Number of Sequences: 219361
Number of extensions: 455624
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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