ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38f18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CDCP1_MOUSE (Q5U462) CUB domain-containing protein 1 precursor (... 28 5.0

>CDCP1_MOUSE (Q5U462) CUB domain-containing protein 1 precursor (Transmembrane|
           and associated with src kinases) (Membrane glycoprotein
           gp140) (CD318 antigen)
          Length = 833

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -2

Query: 146 LPPLTVIVSLVIGIAGIGALLVYGL 72
           L P TV +++VIG AG GALL++ L
Sbjct: 659 LTPRTVDLAVVIGAAGGGALLLFAL 683


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,491,813
Number of Sequences: 219361
Number of extensions: 346848
Number of successful extensions: 1026
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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