>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4|
          Length = 211

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = -3

Query: 376 LPKFGEWDVNDPASADGFTVIFNKARDEKKAG 281
           +PKFG+WD N+P+SADG+T IFNK R+E+ +G
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

>TRP_DROME (P19334) Transient receptor potential protein|
          Length = 1275

 Score = 32.7 bits (73), Expect = 0.55
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 355  DVNDPASADGFTVIFNKARDEKKAGNGQDTESPCKDAR 242
            +V++ + ADG      K  D+KKAG+ +D + P KD++
Sbjct: 985  NVDEKSGADGKPGTMGKPTDDKKAGDDKDKQQPPKDSK 1022

>PRGR_RAT (Q63449) Progesterone receptor (PR)|
          Length = 923

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = -1

Query: 492 PFLLPPAADETFPQAPLP------PPRRIGTAAALNPCRRNLVALCPSLANGTSTTQLL 334
           P+LL  A+  TFP  PLP      PP R G AA   P      A+ P  ++G++   +L
Sbjct: 402 PYLLAGASAATFPDFPLPPRPPRAPPSRPGEAAVAAPS----AAVSPVSSSGSALECIL 456

>ZN341_HUMAN (Q9BYN7) Zinc finger protein 341|
          Length = 854

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = -1

Query: 480 PPAADETFPQAPLPPPRRIGTAAALNPCRRNLVALCPSLA--NGTSTTQLLLMDSQLYST 307
           PP      PQ P PPP+ +G     NP    +V +  + A   G+ T ++  +  Q Y  
Sbjct: 186 PPLPPPPPPQPPPPPPQSLGPPGRPNPGGNGVVEVYSAAAPLAGSGTVEIQALGMQPYPP 245

Query: 306 KPGMRKRLGMDKILNPLAKTPGLRGWNLMPP 214
                + +       P   +PG +G+    P
Sbjct: 246 LEVPNQCVEPPVYPTPTVYSPGKQGFKPKGP 276

>ZYX_CHICK (Q04584) Zyxin|
          Length = 542

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 480 PPAADETFPQAPLPPPRRIGTAAAL 406
           PPA DE FP  P PPP       AL
Sbjct: 114 PPAPDEAFPSPPPPPPPMFDEGPAL 138

>CARA_SULSO (Q59968) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 367

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 230 HPLSPGVFARGFSILSIPSLFLIPGFVEYNCESI 331
           H +  G++ RGFSI+ +P  F     +EYN + I
Sbjct: 192 HGILYGLYKRGFSIVRVPCSFSASKIIEYNPKGI 225

>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2|
           protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile
           X E mental retardation syndrome protein)
          Length = 1311

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 486 LLPPAADETFPQAPLPPP 433
           ++PP  D T P AP+PPP
Sbjct: 122 IIPPHQDNTHPSAPMPPP 139

>UPPP_METTH (O27479) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase)
          Length = 181

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 212 LGGIRFHPLSPGVFARGFSILSIPSLFLIPGFVEYNCESISRSWVVDVPFAKLGQRATRF 391
           L G+ F      +F+   S+ ++    L+ GF+ +  E+ISR     +P  KLG R +  
Sbjct: 11  LAGVLFKDFFESLFS---SLTAVGFFLLVTGFLLWGSENISRRVREKLPVEKLGVRESLI 67

Query: 392 LRHGLSAAAVP-IRRGG 439
           +    + A  P I R G
Sbjct: 68  IGCAQALAIAPGISRSG 84

>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation|
           protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 486 LLPPAADETFPQAPLPPP 433
           ++PP  D T P AP+PPP
Sbjct: 118 IIPPHQDNTHPSAPMPPP 135

>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation|
           protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 486 LLPPAADETFPQAPLPPP 433
           ++PP  D T P AP+PPP
Sbjct: 118 IIPPHQDNTHPSAPMPPP 135

>MURE_SYNPX (Q7U5L3) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 500

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 483 LPPAADETFPQAPLPPPRRIGTAAAL---NPCRRNLVALCPSLANGTSTTQLL 334
           LPPAAD+       P  R IG  AA    +PCRR  +         T+TT L+
Sbjct: 76  LPPAADQPVLVLREPVARSIGELAASYWGHPCRRMALIGVTGTNGKTTTTHLI 128

>FOXD3_HUMAN (Q9UJU5) Forkhead box protein D3 (HNF3/FH transcription factor|
           genesis)
          Length = 478

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
 Frame = -1

Query: 495 FPFLLPPAADETFPQAPLPPPRRIGTAAA-----LNPCRRNLVALCPSLANGTSTTQLLL 331
           +P+ LPP A    P  PL P   +G  AA     L P  +  +    + A    T     
Sbjct: 303 YPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAG 362

Query: 330 MDSQLYSTKPGMRKRLGMDKILNPLAKTPG 241
             + L  ++P  R    ++ I+      PG
Sbjct: 363 TTASLIKSEPSARPSFSIENIIGGGPAAPG 392

>FOXD3_MOUSE (Q61060) Forkhead box protein D3 (HNF3/FH transcription factor|
           genesis) (Hepatocyte nuclear factor 3 forkhead homolog
           2) (HFH-2)
          Length = 465

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
 Frame = -1

Query: 495 FPFLLPPAADETFPQAPLPPPRRIGTAAA-----LNPCRR------NLVALCPSLANGTS 349
           +P+ LPP A    P  PL P   +G  AA     L P  +         A     A    
Sbjct: 288 YPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPSLQLQLNTLGAAAAAAGTAGAAG 347

Query: 348 TTQLLLMDSQLYSTKPGMRKRLGMDKILNPLAKTPG 241
           TT L+        ++P  R    ++ I+   +  PG
Sbjct: 348 TTSLI-------KSEPSARPSFSIENIIGAGSAAPG 376

>CHS2_RHIOL (P30595) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 2)
          Length = 858

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 480 PPAADETFPQAPLPPPRRIGTAAALNPCRRNLVALCP 370
           PP+ +  + QAP   PRR  T   +   + NLV  CP
Sbjct: 99  PPSPNMHYGQAPRRQPRRFKTTRQVKLTKGNLVLDCP 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,016,316
Number of Sequences: 219361
Number of extensions: 1844157
Number of successful extensions: 6358
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6348
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)