ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38e16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase) 30 1.9
2IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B ... 28 9.2

>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)|
          Length = 426

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 116 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 30
           D  A+PW  +P I +   PDGP+ I H +
Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182



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>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 436

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 128 YRPIDVNAMPWECVPVIVQYWMPDG 54
           YR + +N +PW+  P  VQ W+ DG
Sbjct: 101 YRAV-INNIPWDITPEGVQAWVEDG 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,141,702
Number of Sequences: 219361
Number of extensions: 267839
Number of successful extensions: 963
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 80,573,946
effective HSP length: 18
effective length of database: 76,625,448
effective search space used: 1839010752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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