>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley,
           Prato, mRNA Chloroplast, 939 nt]
          Length = 939

 Score =  266 bits (134), Expect = 3e-68
 Identities = 148/150 (98%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                       
Query: 106 attacaacacgtttttgcactgccacctactcctccacactttgtacatncctcagcacc 165
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 809 attacaacacgtttttgcactgccacctactcctccacactttgtacat-cctcagcacc 751

                                                                       
Query: 166 ccaaaataataattcagaccacctgaaacctccttggtcggtgaaatcgacggatttatt 225
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 750 ccaaaataataattcagaccacct-aaacctccttggtcggtgaaatcgacggatttatt 692

                                         
Query: 226 ggccggagatggtctggatgatggtgttgt 255
           ||||||||||||||||||||||||||||||
Sbjct: 691 ggccggagatggtctggatgatggtgttgt 662



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 46/50 (92%), Gaps = 3/50 (6%)
 Strand = Plus / Minus

                                                             
Query: 24  atattacaagtacagcctccgtncgggaagccatgggcgaatccacaagg 73
           |||||||||||||||| |||||   |||||||||||||||||||||||||
Sbjct: 877 atattacaagtacagc-tccgtc--ggaagccatgggcgaatccacaagg 831

>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4)
           mRNA, partial cds; nuclear gene for chloroplast product
          Length = 687

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 221 ttattggccggagatggtctggatgatggtgttgt 255
           |||||||||||||||||||||||||||||||||||
Sbjct: 687 ttattggccggagatggtctggatgatggtgttgt 653

>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V,
             complete sequence
          Length = 114056

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 131   cctactcctccacactttgtaca 153
             |||||||||||||||||||||||
Sbjct: 37526 cctactcctccacactttgtaca 37504

>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence
          Length = 186333

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   ctgccacctactcctccacac 145
             |||||||||||||||||||||
Sbjct: 11776 ctgccacctactcctccacac 11756

>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence
          Length = 165177

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 125   ctgccacctactcctccacac 145
             |||||||||||||||||||||
Sbjct: 60657 ctgccacctactcctccacac 60677

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 236    ggtctggatgatggtgttgtc 256
              |||||||||||||||||||||
Sbjct: 172999 ggtctggatgatggtgttgtc 172979

>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete
             sequence
          Length = 222209

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   cagcaccccaaaataataatt 179
             |||||||||||||||||||||
Sbjct: 97909 cagcaccccaaaataataatt 97929

>gb|AC097525.3| Homo sapiens BAC clone RP11-627E8 from 2, complete sequence
          Length = 55514

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    acatgggtgatattacaagta 35
             |||||||||||||||||||||
Sbjct: 11076 acatgggtgatattacaagta 11096

>gb|AF276663.1|AF276663 Drosophila melanogaster comb (cg) gene, complete cds, alternatively
            spliced
          Length = 9504

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 125  ctgccacctactcctccacac 145
            |||||||||||||||||||||
Sbjct: 4304 ctgccacctactcctccacac 4324

>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    gatggtctggatgatggtgtt 253
              |||||||||||||||||||||
Sbjct: 631602 gatggtctggatgatggtgtt 631582

>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete
             sequence
          Length = 229685

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 125   ctgccacctactcctccacac 145
             |||||||||||||||||||||
Sbjct: 31518 ctgccacctactcctccacac 31538

>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence
          Length = 217949

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  cagcaccccaaaataataatt 179
            |||||||||||||||||||||
Sbjct: 9849 cagcaccccaaaataataatt 9829

>ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-alpha globulin
           inhibitor H2 polypeptide (LOC478011), mRNA
          Length = 2941

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 tggtctggatgatggtgttg 254
           ||||||||||||||||||||
Sbjct: 377 tggtctggatgatggtgttg 358

>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9,
             complete sequence
          Length = 179135

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   caccccaaaataataattca 181
             ||||||||||||||||||||
Sbjct: 16903 caccccaaaataataattca 16922

>gb|AY013909.1| Antirrhinum meonanthum isolate 4 S (S) gene, partial cds
          Length = 585

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  gcaccaccggtaactttaag 104
           ||||||||||||||||||||
Sbjct: 577 gcaccaccggtaactttaag 558

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 228     ccggagatggtctggatgatggtg 251
               ||||||||||||||||||| ||||
Sbjct: 5018847 ccggagatggtctggatgagggtg 5018824

>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence
          Length = 1460

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 ggtctggatgatggtgttgt 255
           ||||||||||||||||||||
Sbjct: 280 ggtctggatgatggtgttgt 299


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,336,328
Number of Sequences: 3902068
Number of extensions: 2336328
Number of successful extensions: 35456
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35420
Number of HSP's gapped (non-prelim): 33
length of query: 256
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 234
effective length of database: 17,147,199,772
effective search space: 4012444746648
effective search space used: 4012444746648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)