ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37p04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 638 e-180
2dbj|AK121798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 299 6e-78
4gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome... 299 6e-78
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 299 6e-78
6ref|XM_470248.1| Oryza sativa (japonica cultivar-group), predic... 297 2e-77
7gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
9gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 74 7e-10
10dbj|AK069156.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 7e-10
11dbj|AK099998.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-09
12ref|NM_180450.2| Arabidopsis thaliana unknown protein AT5G06530 ... 60 1e-05
13ref|NM_001036766.1| Arabidopsis thaliana unknown protein AT5G065... 60 1e-05
14ref|NM_120736.2| Arabidopsis thaliana ATPase, coupled to transme... 60 1e-05
15gb|AY114068.1| Arabidopsis thaliana putative ABC transporter pro... 60 1e-05
16gb|AY059787.1| Arabidopsis thaliana putative ABC transporter pro... 60 1e-05
17gb|AF389289.1|AF389289 Arabidopsis thaliana AT5g06530/F15M7_6 mR... 60 1e-05
18gb|BT002271.1| Arabidopsis thaliana At5g06530/F15M7_6 mRNA, comp... 60 1e-05
19dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
20gb|AC160966.2| Mus musculus BAC clone RP24-362F17 from chromosom... 44 0.59
21emb|CT571257.6| Mouse DNA sequence from clone RP24-168J13 on chr... 44 0.59
22gb|AC165364.2| Mus musculus BAC clone RP23-75J20 from chromosome... 44 0.59
23gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 2.3
24ref|NM_211660.1| Eremothecium gossypii AGL068Wp (AGL068W), mRNA 42 2.3
25gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 42 2.3
26gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
27gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, co... 40 9.3
28gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 9.3
29gb|AC159430.1| Trypanosoma brucei chromosome 3 clone RPCI93-28C2... 40 9.3
30gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, com... 40 9.3
31gb|AC019155.4| Homo sapiens BAC clone RP11-3B12 from 7, complete... 40 9.3
32gb|AC093026.3| Homo sapiens 12 BAC RP11-307E8 (Roswell Park Canc... 40 9.3
33dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 9.3
34gb|AC110781.3| Homo sapiens BAC clone RP11-383A19 from 7, comple... 40 9.3
35gb|AC005342.1| Homo sapiens 12p13.3 PAC RPCI5-1096D14 (Roswell P... 40 9.3
36gb|AC007543.4| Homo sapiens 12p12 BAC RPCI11-1018J8 (Roswell Par... 40 9.3
37dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
38dbj|AP007293.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 9.3

>dbj|AK066035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047J21, full
            insert sequence
          Length = 2791

 Score =  638 bits (322), Expect = e-180
 Identities = 433/470 (92%)
 Strand = Plus / Minus

                                                                        
Query: 209  acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268
            |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || |||
Sbjct: 2501 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 2442

                                                                        
Query: 269  ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328
            |||| ||   | ||||| |||||||| || || |  || |||||||||||||| ||||||
Sbjct: 2441 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 2382

                                                                        
Query: 329  tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctcttt 388
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2381 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctcttt 2322

                                                                        
Query: 389  acaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgcc 448
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 2321 acaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgttgcc 2262

                                                                        
Query: 449  ttcttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatg 508
            |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 2261 ttcttgatatccaagaggctagctccaattgccaatcctaatccctgagcagcaatgatg 2202

                                                                        
Query: 509  ctgagaaagacggtcaacatgctaagaaagaaatgcatggcacttgctttgaggcctgcc 568
            ||||| |||||||||||||||||||||||||||||   |||| |||||||||||||||||
Sbjct: 2201 ctgaggaagacggtcaacatgctaagaaagaaatgtgcggcagttgctttgaggcctgcc 2142

                                                                        
Query: 569  atgaagtagacaatcaccataaatatgactgggaggaaaaggtctagtggcagatcactt 628
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2141 atgaagtagacaatcaccataaatatgactggaaggaaaaggtccagtggcagatcactt 2082

                                                              
Query: 629  gtcgttctggccaggaagtatgcactgagcttgtacatgtcaactgcacg 678
            ||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 2081 gtcgttctggccaagaagtatgcactgagcttgtacatgtcagctgcacg 2032



to top

>dbj|AK121798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096H22, full
            insert sequence
          Length = 6502

 Score =  347 bits (175), Expect = 3e-92
 Identities = 259/287 (90%)
 Strand = Plus / Minus

                                                                        
Query: 209  acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268
            |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || |||
Sbjct: 6209 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 6150

                                                                        
Query: 269  ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328
            |||| ||   | ||||| |||||||| || || |  || |||||||||||||| ||||||
Sbjct: 6149 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 6090

                                                                        
Query: 329  tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctcttt 388
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6089 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctcttt 6030

                                                                        
Query: 389  acaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgcc 448
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 6029 acaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgttgcc 5970

                                                           
Query: 449  ttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495
            |||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 5969 ttcttgatatccaagaggctagctccaattgccaatcctaatccctg 5923



 Score =  299 bits (151), Expect = 6e-78
 Identities = 178/187 (95%)
 Strand = Plus / Minus

                                                                        
Query: 492  cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551
            |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| 
Sbjct: 1399 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 1340

                                                                        
Query: 552  ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1339 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 1280

                                                                        
Query: 612  ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671
            | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 1279 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 1220

                   
Query: 672  ctgcacg 678
            |||||||
Sbjct: 1219 ctgcacg 1213



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  299 bits (151), Expect = 6e-78
 Identities = 178/187 (95%)
 Strand = Plus / Plus

                                                                           
Query: 492     cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551
               |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| 
Sbjct: 3062915 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 3062974

                                                                           
Query: 552     ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611
               ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3062975 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 3063034

                                                                           
Query: 612     ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671
               | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 3063035 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 3063094

                      
Query: 672     ctgcacg 678
               |||||||
Sbjct: 3063095 ctgcacg 3063101



 Score =  180 bits (91), Expect = 4e-42
 Identities = 106/111 (95%)
 Strand = Plus / Plus

                                                                           
Query: 385     ctttacaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagt 444
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 3058281 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgt 3058340

                                                                  
Query: 445     tgccttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495
               |||||||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 3058341 tgccttcttgatatccaagaggctagctccaattgccaatcctaatccctg 3058391



 Score =  170 bits (86), Expect = 4e-39
 Identities = 155/178 (87%)
 Strand = Plus / Plus

                                                                           
Query: 209     acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268
               |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || |||
Sbjct: 3057995 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 3058054

                                                                           
Query: 269     ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328
               |||| ||   | ||||| |||||||| || || |  || |||||||||||||| ||||||
Sbjct: 3058055 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 3058114

                                                                         
Query: 329     tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctct 386
               ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 3058115 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctct 3058172



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 99/119 (83%), Gaps = 8/119 (6%)
 Strand = Plus / Plus

                                                                           
Query: 385     ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437
               |||||||||||| |||||||||||||||||||       |||||||||| ||||||| ||
Sbjct: 4842882 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 4842941

                                                                          
Query: 438     gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495
                |||  ||||  || || || ||||||||||||||||||||||||| ||||| ||||||
Sbjct: 4842942 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccctg 4843000



to top

>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0011L14, complete sequence
          Length = 117974

 Score =  299 bits (151), Expect = 6e-78
 Identities = 178/187 (95%)
 Strand = Plus / Minus

                                                                         
Query: 492   cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551
             |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| 
Sbjct: 33346 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 33287

                                                                         
Query: 552   ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 33286 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 33227

                                                                         
Query: 612   ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671
             | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 33226 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 33167

                    
Query: 672   ctgcacg 678
             |||||||
Sbjct: 33166 ctgcacg 33160



 Score =  180 bits (91), Expect = 4e-42
 Identities = 106/111 (95%)
 Strand = Plus / Minus

                                                                         
Query: 385   ctttacaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagt 444
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 37980 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgt 37921

                                                                
Query: 445   tgccttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495
             |||||||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 37920 tgccttcttgatatccaagaggctagctccaattgccaatcctaatccctg 37870



 Score =  170 bits (86), Expect = 4e-39
 Identities = 155/178 (87%)
 Strand = Plus / Minus

                                                                         
Query: 209   acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268
             |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || |||
Sbjct: 38266 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 38207

                                                                         
Query: 269   ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328
             |||| ||   | ||||| |||||||| || || |  || |||||||||||||| ||||||
Sbjct: 38206 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 38147

                                                                       
Query: 329   tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctct 386
             ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 38146 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctct 38089



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  299 bits (151), Expect = 6e-78
 Identities = 178/187 (95%)
 Strand = Plus / Plus

                                                                           
Query: 492     cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551
               |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| 
Sbjct: 3063026 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 3063085

                                                                           
Query: 552     ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611
               ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3063086 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 3063145

                                                                           
Query: 612     ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671
               | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 3063146 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 3063205

                      
Query: 672     ctgcacg 678
               |||||||
Sbjct: 3063206 ctgcacg 3063212



 Score =  180 bits (91), Expect = 4e-42
 Identities = 106/111 (95%)
 Strand = Plus / Plus

                                                                           
Query: 385     ctttacaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagt 444
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 3058392 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgt 3058451

                                                                  
Query: 445     tgccttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495
               |||||||||||||||||||||| ||||||||||||||| ||||| ||||||
Sbjct: 3058452 tgccttcttgatatccaagaggctagctccaattgccaatcctaatccctg 3058502



 Score =  170 bits (86), Expect = 4e-39
 Identities = 155/178 (87%)
 Strand = Plus / Plus

                                                                           
Query: 209     acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268
               |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || |||
Sbjct: 3058106 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 3058165

                                                                           
Query: 269     ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328
               |||| ||   | ||||| |||||||| || || |  || |||||||||||||| ||||||
Sbjct: 3058166 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 3058225

                                                                         
Query: 329     tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctct 386
               ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 3058226 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctct 3058283



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 99/119 (83%), Gaps = 8/119 (6%)
 Strand = Plus / Plus

                                                                           
Query: 385     ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437
               |||||||||||| |||||||||||||||||||       |||||||||| ||||||| ||
Sbjct: 4842097 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 4842156

                                                                          
Query: 438     gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495
                |||  ||||  || || || ||||||||||||||||||||||||| ||||| ||||||
Sbjct: 4842157 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccctg 4842215



to top

>ref|XM_470248.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2088

 Score =  297 bits (150), Expect = 2e-77
 Identities = 177/186 (95%)
 Strand = Plus / Minus

                                                                        
Query: 493  ctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcact 552
            ||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| |
Sbjct: 1974 ctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcagt 1915

                                                                        
Query: 553  tgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggtc 612
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1914 tgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggtc 1855

                                                                        
Query: 613  tagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaac 672
             |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 1854 cagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcagc 1795

                  
Query: 673  tgcacg 678
            ||||||
Sbjct: 1794 tgcacg 1789



to top

>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08,
              complete sequence
          Length = 144781

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 95/113 (84%), Gaps = 9/113 (7%)
 Strand = Plus / Plus

                                                                          
Query: 385    ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437
              |||||||||||| |||||||||||||||||||       |||||||||| ||||||| ||
Sbjct: 109333 ctttacaaagaatcctcctgctagcatgaatgccatgattcatgactgtaactgaaggta 109392

                                                                   
Query: 438    gagtagttgccttcttg--atatccaagagggtagctccaattgccagtccta 488
               |||  ||||||| ||   |||||||||||||||||||||||||||| |||||
Sbjct: 109393 cagtttttgccttttttttatatccaagagggtagctccaattgccaatccta 109445



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 95/113 (84%), Gaps = 9/113 (7%)
 Strand = Plus / Plus

                                                                           
Query: 385     ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437
               |||||||||||| |||||||||||||||||||       |||||||||| ||||||| ||
Sbjct: 4487709 ctttacaaagaatcctcctgctagcatgaatgccatgattcatgactgtaactgaaggta 4487768

                                                                    
Query: 438     gagtagttgccttcttg--atatccaagagggtagctccaattgccagtccta 488
                |||  ||||||| ||   |||||||||||||||||||||||||||| |||||
Sbjct: 4487769 cagtttttgccttttttttatatccaagagggtagctccaattgccaatccta 4487821



to top

>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
              complete sequence
          Length = 159092

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 99/119 (83%), Gaps = 8/119 (6%)
 Strand = Plus / Minus

                                                                          
Query: 385    ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437
              |||||||||||| |||||||||||||||||||       |||||||||| ||||||| ||
Sbjct: 152665 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 152606

                                                                         
Query: 438    gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495
               |||  ||||  || || || ||||||||||||||||||||||||| ||||| ||||||
Sbjct: 152605 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccctg 152547



to top

>dbj|AK069156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007L22, full
            insert sequence
          Length = 2429

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 99/119 (83%), Gaps = 8/119 (6%)
 Strand = Plus / Minus

                                                                        
Query: 384  tctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagct 436
            ||||||||||||| |||||||||||||||||||       |||||||||| ||||||| |
Sbjct: 1766 tctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggt 1707

                                                                       
Query: 437  agagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccct 494
            | |||  ||||  || || || ||||||||||||||||||||||||| ||||| |||||
Sbjct: 1706 acagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccct 1648



to top

>dbj|AK099998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C19, full
            insert sequence
          Length = 2093

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 98/118 (83%), Gaps = 8/118 (6%)
 Strand = Plus / Minus

                                                                        
Query: 385  ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437
            |||||||||||| |||||||||||||||||||       |||||||||| ||||||| ||
Sbjct: 1646 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 1587

                                                                      
Query: 438  gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccct 494
             |||  ||||  || || || ||||||||||||||||||||||||| ||||| |||||
Sbjct: 1586 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccct 1529



to top

>ref|NM_180450.2| Arabidopsis thaliana unknown protein AT5G06530 transcript variant
            AT5G06530.2 mRNA, complete cds
          Length = 2788

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 392  aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
            ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 2252 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2193

                                                                      
Query: 452  ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509
            || | |||||  |   | || |||||||| ||||| ||||||||||| || |||||||
Sbjct: 2192 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2135



to top

>ref|NM_001036766.1| Arabidopsis thaliana unknown protein AT5G06530 transcript variant
            AT5G06530.3 mRNA, complete cds
          Length = 2882

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 392  aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
            ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 2252 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2193

                                                                      
Query: 452  ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509
            || | |||||  |   | || |||||||| ||||| ||||||||||| || |||||||
Sbjct: 2192 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2135



to top

>ref|NM_120736.2| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
            substances AT5G06530 transcript variant AT5G06530.1 mRNA,
            complete cds
          Length = 2684

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 392  aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
            ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 2148 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2089

                                                                      
Query: 452  ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509
            || | |||||  |   | || |||||||| ||||| ||||||||||| || |||||||
Sbjct: 2088 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2031



to top

>gb|AY114068.1| Arabidopsis thaliana putative ABC transporter protein (At5g06530)
            mRNA, complete cds
          Length = 2287

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 392  aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
            ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 2033 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 1974

                                                                      
Query: 452  ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509
            || | |||||  |   | || |||||||| ||||| ||||||||||| || |||||||
Sbjct: 1973 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 1916



to top

>gb|AY059787.1| Arabidopsis thaliana putative ABC transporter protein (At5g06530)
            mRNA, complete cds
          Length = 2572

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 392  aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
            ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 2142 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2083

                                                                      
Query: 452  ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509
            || | |||||  |   | || |||||||| ||||| ||||||||||| || |||||||
Sbjct: 2082 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2025



to top

>gb|AF389289.1|AF389289 Arabidopsis thaliana AT5g06530/F15M7_6 mRNA, complete cds
          Length = 2582

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 392  aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
            ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 2146 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2087

                                                                      
Query: 452  ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509
            || | |||||  |   | || |||||||| ||||| ||||||||||| || |||||||
Sbjct: 2086 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2029



to top

>gb|BT002271.1| Arabidopsis thaliana At5g06530/F15M7_6 mRNA, complete cds
          Length = 1377

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 392  aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
            ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 1154 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 1095

                                                                      
Query: 452  ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509
            || | |||||  |   | || |||||||| ||||| ||||||||||| || |||||||
Sbjct: 1094 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 1037



to top

>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7
          Length = 74350

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                         
Query: 392   aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451
             ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || ||||||
Sbjct: 14980 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 15039

               
Query: 452   tt 453
             ||
Sbjct: 15040 tt 15041



to top

>gb|AC160966.2| Mus musculus BAC clone RP24-362F17 from chromosome 9, complete sequence
          Length = 129782

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 526   catgctaagaaagaaatgcatggcacttgc 555
             |||||||||||||||||| ||||| |||||
Sbjct: 89661 catgctaagaaagaaatgaatggctcttgc 89690



to top

>emb|CT571257.6| Mouse DNA sequence from clone RP24-168J13 on chromosome 9, complete
             sequence
          Length = 32114

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 526   catgctaagaaagaaatgcatggcacttgc 555
             |||||||||||||||||| ||||| |||||
Sbjct: 18691 catgctaagaaagaaatgaatggctcttgc 18662



to top

>gb|AC165364.2| Mus musculus BAC clone RP23-75J20 from chromosome 3, complete sequence
          Length = 240679

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 551   cttgctttgaggcctgccatga 572
             ||||||||||||||||||||||
Sbjct: 45745 cttgctttgaggcctgccatga 45724



to top

>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 299    gggtcgtactgcaccttcagcagcagcctgtac 331
              ||||||| |||||||||||||| | ||||||||
Sbjct: 582530 gggtcgtgctgcaccttcagcaacggcctgtac 582498



to top

>ref|NM_211660.1| Eremothecium gossypii AGL068Wp (AGL068W), mRNA
          Length = 1866

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 299  gggtcgtactgcaccttcagcagcagcctgtac 331
            ||||||| |||||||||||||| | ||||||||
Sbjct: 1841 gggtcgtgctgcaccttcagcaacggcctgtac 1809



to top

>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 150    ttcacttgccctgctagccgttcga 174
              ||||||||||||||||||| |||||
Sbjct: 974087 ttcacttgccctgctagcccttcga 974063



to top

>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   tgtgactgaagctagagtag 443
             ||||||||||||||||||||
Sbjct: 89661 tgtgactgaagctagagtag 89680



to top

>gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, complete sequence
          Length = 196458

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    agcagcaatgatgctgagaa 515
              ||||||||||||||||||||
Sbjct: 113081 agcagcaatgatgctgagaa 113100



to top

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 305     tactgcaccttcagcagcag 324
               ||||||||||||||||||||
Sbjct: 1111838 tactgcaccttcagcagcag 1111857



to top

>gb|AC159430.1| Trypanosoma brucei chromosome 3 clone RPCI93-28C22, complete sequence
          Length = 142068

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   tactgcaccttcagcagcag 324
             ||||||||||||||||||||
Sbjct: 35739 tactgcaccttcagcagcag 35720



to top

>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence
          Length = 236163

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 493   ctgagcagcaatgatgctgagaaa 516
             ||||||||||||||||||| ||||
Sbjct: 91433 ctgagcagcaatgatgctgggaaa 91456



to top

>gb|AC019155.4| Homo sapiens BAC clone RP11-3B12 from 7, complete sequence
          Length = 176130

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    acttccctacatgcaatcaa 103
             ||||||||||||||||||||
Sbjct: 17868 acttccctacatgcaatcaa 17849



to top

>gb|AC093026.3| Homo sapiens 12 BAC RP11-307E8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114468

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 560   aggcctgccatgaagtagac 579
             ||||||||||||||||||||
Sbjct: 27565 aggcctgccatgaagtagac 27546



to top

>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     ggaactctctttacaaagaa 396
               ||||||||||||||||||||
Sbjct: 5403635 ggaactctctttacaaagaa 5403616



to top

>gb|AC110781.3| Homo sapiens BAC clone RP11-383A19 from 7, complete sequence
          Length = 44985

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   aaatgcatggcacttgcttt 558
             ||||||||||||||||||||
Sbjct: 33754 aaatgcatggcacttgcttt 33773



to top

>gb|AC005342.1| Homo sapiens 12p13.3 PAC RPCI5-1096D14 (Roswell Park Cancer Institute
              Human PAC Library) complete sequence
          Length = 220257

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 522    tcaacatgctaagaaagaaatgca 545
              |||||||||||||| |||||||||
Sbjct: 189164 tcaacatgctaagacagaaatgca 189141



to top

>gb|AC007543.4| Homo sapiens 12p12 BAC RPCI11-1018J8 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 212176

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 531    taagaaagaaatgcatggca 550
              ||||||||||||||||||||
Sbjct: 119567 taagaaagaaatgcatggca 119586



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 424      tgtgactgaagctagagtag 443
                ||||||||||||||||||||
Sbjct: 19158641 tgtgactgaagctagagtag 19158660



to top

>dbj|AP007293.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34C12, TM0361,
             complete sequence
          Length = 108947

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 327   tgtacgtgtggtagttgaaggacaggta 354
             ||||||||||||||||||| || |||||
Sbjct: 68295 tgtacgtgtggtagttgaaagataggta 68268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,191,805
Number of Sequences: 3902068
Number of extensions: 5191805
Number of successful extensions: 88436
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88246
Number of HSP's gapped (non-prelim): 185
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top