| Clone Name | rbaal37p04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047J21, full insert sequence Length = 2791 Score = 638 bits (322), Expect = e-180 Identities = 433/470 (92%) Strand = Plus / Minus Query: 209 acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268 |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || ||| Sbjct: 2501 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 2442 Query: 269 ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328 |||| || | ||||| |||||||| || || | || |||||||||||||| |||||| Sbjct: 2441 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 2382 Query: 329 tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctcttt 388 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2381 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctcttt 2322 Query: 389 acaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgcc 448 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 2321 acaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgttgcc 2262 Query: 449 ttcttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatg 508 |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 2261 ttcttgatatccaagaggctagctccaattgccaatcctaatccctgagcagcaatgatg 2202 Query: 509 ctgagaaagacggtcaacatgctaagaaagaaatgcatggcacttgctttgaggcctgcc 568 ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 2201 ctgaggaagacggtcaacatgctaagaaagaaatgtgcggcagttgctttgaggcctgcc 2142 Query: 569 atgaagtagacaatcaccataaatatgactgggaggaaaaggtctagtggcagatcactt 628 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 2141 atgaagtagacaatcaccataaatatgactggaaggaaaaggtccagtggcagatcactt 2082 Query: 629 gtcgttctggccaggaagtatgcactgagcttgtacatgtcaactgcacg 678 ||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 2081 gtcgttctggccaagaagtatgcactgagcttgtacatgtcagctgcacg 2032
>dbj|AK121798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096H22, full insert sequence Length = 6502 Score = 347 bits (175), Expect = 3e-92 Identities = 259/287 (90%) Strand = Plus / Minus Query: 209 acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268 |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || ||| Sbjct: 6209 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 6150 Query: 269 ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328 |||| || | ||||| |||||||| || || | || |||||||||||||| |||||| Sbjct: 6149 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 6090 Query: 329 tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctcttt 388 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 6089 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctcttt 6030 Query: 389 acaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgcc 448 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 6029 acaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgttgcc 5970 Query: 449 ttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495 |||||||||||||||||| ||||||||||||||| ||||| |||||| Sbjct: 5969 ttcttgatatccaagaggctagctccaattgccaatcctaatccctg 5923 Score = 299 bits (151), Expect = 6e-78 Identities = 178/187 (95%) Strand = Plus / Minus Query: 492 cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 1399 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 1340 Query: 552 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1339 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 1280 Query: 612 ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671 | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1279 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 1220 Query: 672 ctgcacg 678 ||||||| Sbjct: 1219 ctgcacg 1213
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 299 bits (151), Expect = 6e-78 Identities = 178/187 (95%) Strand = Plus / Plus Query: 492 cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 3062915 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 3062974 Query: 552 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3062975 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 3063034 Query: 612 ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671 | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 3063035 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 3063094 Query: 672 ctgcacg 678 ||||||| Sbjct: 3063095 ctgcacg 3063101 Score = 180 bits (91), Expect = 4e-42 Identities = 106/111 (95%) Strand = Plus / Plus Query: 385 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagt 444 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 3058281 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgt 3058340 Query: 445 tgccttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495 |||||||||||||||||||||| ||||||||||||||| ||||| |||||| Sbjct: 3058341 tgccttcttgatatccaagaggctagctccaattgccaatcctaatccctg 3058391 Score = 170 bits (86), Expect = 4e-39 Identities = 155/178 (87%) Strand = Plus / Plus Query: 209 acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268 |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || ||| Sbjct: 3057995 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 3058054 Query: 269 ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328 |||| || | ||||| |||||||| || || | || |||||||||||||| |||||| Sbjct: 3058055 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 3058114 Query: 329 tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctct 386 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 3058115 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctct 3058172 Score = 73.8 bits (37), Expect = 7e-10 Identities = 99/119 (83%), Gaps = 8/119 (6%) Strand = Plus / Plus Query: 385 ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437 |||||||||||| ||||||||||||||||||| |||||||||| ||||||| || Sbjct: 4842882 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 4842941 Query: 438 gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495 ||| |||| || || || ||||||||||||||||||||||||| ||||| |||||| Sbjct: 4842942 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccctg 4843000
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 299 bits (151), Expect = 6e-78 Identities = 178/187 (95%) Strand = Plus / Minus Query: 492 cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 33346 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 33287 Query: 552 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 33286 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 33227 Query: 612 ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671 | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 33226 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 33167 Query: 672 ctgcacg 678 ||||||| Sbjct: 33166 ctgcacg 33160 Score = 180 bits (91), Expect = 4e-42 Identities = 106/111 (95%) Strand = Plus / Minus Query: 385 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagt 444 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 37980 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgt 37921 Query: 445 tgccttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495 |||||||||||||||||||||| ||||||||||||||| ||||| |||||| Sbjct: 37920 tgccttcttgatatccaagaggctagctccaattgccaatcctaatccctg 37870 Score = 170 bits (86), Expect = 4e-39 Identities = 155/178 (87%) Strand = Plus / Minus Query: 209 acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268 |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || ||| Sbjct: 38266 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 38207 Query: 269 ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328 |||| || | ||||| |||||||| || || | || |||||||||||||| |||||| Sbjct: 38206 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 38147 Query: 329 tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctct 386 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 38146 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctct 38089
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 299 bits (151), Expect = 6e-78 Identities = 178/187 (95%) Strand = Plus / Plus Query: 492 cctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcac 551 |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 3063026 cctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcag 3063085 Query: 552 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggt 611 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3063086 ttgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggt 3063145 Query: 612 ctagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaa 671 | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 3063146 ccagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcag 3063205 Query: 672 ctgcacg 678 ||||||| Sbjct: 3063206 ctgcacg 3063212 Score = 180 bits (91), Expect = 4e-42 Identities = 106/111 (95%) Strand = Plus / Plus Query: 385 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagt 444 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 3058392 ctttacaaagaaccctcctgctagcatgaatgtcatgactgtaactgaagctagagttgt 3058451 Query: 445 tgccttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495 |||||||||||||||||||||| ||||||||||||||| ||||| |||||| Sbjct: 3058452 tgccttcttgatatccaagaggctagctccaattgccaatcctaatccctg 3058502 Score = 170 bits (86), Expect = 4e-39 Identities = 155/178 (87%) Strand = Plus / Plus Query: 209 acccggtacccgatgatcatcgcgaccagggctccgacctctgtcacgccgttatccaga 268 |||| ||| |||||||||||||||||||| ||| | || |||||||||||||| || ||| Sbjct: 3058106 accctgtagccgatgatcatcgcgaccagagctacaacttctgtcacgccgttgtcaaga 3058165 Query: 269 ggtacggaggtcatcaggatgtccggcacggggtcgtactgcaccttcagcagcagcctg 328 |||| || | ||||| |||||||| || || | || |||||||||||||| |||||| Sbjct: 3058166 ggtatggcattgatcagaatgtccgggacaggatgatattgcaccttcagcagtagcctg 3058225 Query: 329 tacgtgtggtagttgaaggacaggtaccggagccaggatatgaatggtggaactctct 386 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 3058226 tacgtgtggtagttgaatgacaggtagcggagccaggatatgaatggtggaactctct 3058283 Score = 73.8 bits (37), Expect = 7e-10 Identities = 99/119 (83%), Gaps = 8/119 (6%) Strand = Plus / Plus Query: 385 ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437 |||||||||||| ||||||||||||||||||| |||||||||| ||||||| || Sbjct: 4842097 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 4842156 Query: 438 gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495 ||| |||| || || || ||||||||||||||||||||||||| ||||| |||||| Sbjct: 4842157 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccctg 4842215
>ref|XM_470248.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2088 Score = 297 bits (150), Expect = 2e-77 Identities = 177/186 (95%) Strand = Plus / Minus Query: 493 ctgagcagcaatgatgctgagaaagacggtcaacatgctaagaaagaaatgcatggcact 552 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct: 1974 ctgagcagcaatgatgctgaggaagacggtcaacatgctaagaaagaaatgtgcggcagt 1915 Query: 553 tgctttgaggcctgccatgaagtagacaatcaccataaatatgactgggaggaaaaggtc 612 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1914 tgctttgaggcctgccatgaagtagacaatcaccataaatatgactggaaggaaaaggtc 1855 Query: 613 tagtggcagatcacttgtcgttctggccaggaagtatgcactgagcttgtacatgtcaac 672 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct: 1854 cagtggcagatcacttgtcgttctggccaagaagtatgcactgagcttgtacatgtcagc 1795 Query: 673 tgcacg 678 |||||| Sbjct: 1794 tgcacg 1789
>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08, complete sequence Length = 144781 Score = 79.8 bits (40), Expect = 1e-11 Identities = 95/113 (84%), Gaps = 9/113 (7%) Strand = Plus / Plus Query: 385 ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437 |||||||||||| ||||||||||||||||||| |||||||||| ||||||| || Sbjct: 109333 ctttacaaagaatcctcctgctagcatgaatgccatgattcatgactgtaactgaaggta 109392 Query: 438 gagtagttgccttcttg--atatccaagagggtagctccaattgccagtccta 488 ||| ||||||| || |||||||||||||||||||||||||||| ||||| Sbjct: 109393 cagtttttgccttttttttatatccaagagggtagctccaattgccaatccta 109445
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 1e-11 Identities = 95/113 (84%), Gaps = 9/113 (7%) Strand = Plus / Plus Query: 385 ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437 |||||||||||| ||||||||||||||||||| |||||||||| ||||||| || Sbjct: 4487709 ctttacaaagaatcctcctgctagcatgaatgccatgattcatgactgtaactgaaggta 4487768 Query: 438 gagtagttgccttcttg--atatccaagagggtagctccaattgccagtccta 488 ||| ||||||| || |||||||||||||||||||||||||||| ||||| Sbjct: 4487769 cagtttttgccttttttttatatccaagagggtagctccaattgccaatccta 4487821
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 73.8 bits (37), Expect = 7e-10 Identities = 99/119 (83%), Gaps = 8/119 (6%) Strand = Plus / Minus Query: 385 ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437 |||||||||||| ||||||||||||||||||| |||||||||| ||||||| || Sbjct: 152665 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 152606 Query: 438 gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccctg 495 ||| |||| || || || ||||||||||||||||||||||||| ||||| |||||| Sbjct: 152605 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccctg 152547
>dbj|AK069156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007L22, full insert sequence Length = 2429 Score = 73.8 bits (37), Expect = 7e-10 Identities = 99/119 (83%), Gaps = 8/119 (6%) Strand = Plus / Minus Query: 384 tctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagct 436 ||||||||||||| ||||||||||||||||||| |||||||||| ||||||| | Sbjct: 1766 tctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggt 1707 Query: 437 agagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccct 494 | ||| |||| || || || ||||||||||||||||||||||||| ||||| ||||| Sbjct: 1706 acagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccct 1648
>dbj|AK099998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C19, full insert sequence Length = 2093 Score = 71.9 bits (36), Expect = 3e-09 Identities = 98/118 (83%), Gaps = 8/118 (6%) Strand = Plus / Minus Query: 385 ctttacaaagaaccctcctgctagcatgaatg-------tcatgactgtgactgaagcta 437 |||||||||||| ||||||||||||||||||| |||||||||| ||||||| || Sbjct: 1646 ctttacaaagaatcctcctgctagcatgaatgccatgactcatgactgtaactgaaggta 1587 Query: 438 gagtagttgc-cttcttgatatccaagagggtagctccaattgccagtcctagtccct 494 ||| |||| || || || ||||||||||||||||||||||||| ||||| ||||| Sbjct: 1586 cagtttttgcatttttttatgtccaagagggtagctccaattgccaatcctaatccct 1529
>ref|NM_180450.2| Arabidopsis thaliana unknown protein AT5G06530 transcript variant AT5G06530.2 mRNA, complete cds Length = 2788 Score = 60.0 bits (30), Expect = 1e-05 Identities = 96/118 (81%) Strand = Plus / Minus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 2252 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2193 Query: 452 ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509 || | ||||| | | || |||||||| ||||| ||||||||||| || ||||||| Sbjct: 2192 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2135
>ref|NM_001036766.1| Arabidopsis thaliana unknown protein AT5G06530 transcript variant AT5G06530.3 mRNA, complete cds Length = 2882 Score = 60.0 bits (30), Expect = 1e-05 Identities = 96/118 (81%) Strand = Plus / Minus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 2252 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2193 Query: 452 ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509 || | ||||| | | || |||||||| ||||| ||||||||||| || ||||||| Sbjct: 2192 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2135
>ref|NM_120736.2| Arabidopsis thaliana ATPase, coupled to transmembrane movement of substances AT5G06530 transcript variant AT5G06530.1 mRNA, complete cds Length = 2684 Score = 60.0 bits (30), Expect = 1e-05 Identities = 96/118 (81%) Strand = Plus / Minus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 2148 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2089 Query: 452 ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509 || | ||||| | | || |||||||| ||||| ||||||||||| || ||||||| Sbjct: 2088 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2031
>gb|AY114068.1| Arabidopsis thaliana putative ABC transporter protein (At5g06530) mRNA, complete cds Length = 2287 Score = 60.0 bits (30), Expect = 1e-05 Identities = 96/118 (81%) Strand = Plus / Minus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 2033 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 1974 Query: 452 ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509 || | ||||| | | || |||||||| ||||| ||||||||||| || ||||||| Sbjct: 1973 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 1916
>gb|AY059787.1| Arabidopsis thaliana putative ABC transporter protein (At5g06530) mRNA, complete cds Length = 2572 Score = 60.0 bits (30), Expect = 1e-05 Identities = 96/118 (81%) Strand = Plus / Minus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 2142 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2083 Query: 452 ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509 || | ||||| | | || |||||||| ||||| ||||||||||| || ||||||| Sbjct: 2082 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2025
>gb|AF389289.1|AF389289 Arabidopsis thaliana AT5g06530/F15M7_6 mRNA, complete cds Length = 2582 Score = 60.0 bits (30), Expect = 1e-05 Identities = 96/118 (81%) Strand = Plus / Minus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 2146 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 2087 Query: 452 ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509 || | ||||| | | || |||||||| ||||| ||||||||||| || ||||||| Sbjct: 2086 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 2029
>gb|BT002271.1| Arabidopsis thaliana At5g06530/F15M7_6 mRNA, complete cds Length = 1377 Score = 60.0 bits (30), Expect = 1e-05 Identities = 96/118 (81%) Strand = Plus / Minus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 1154 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 1095 Query: 452 ttgatatccaagagggtagctccaattgccagtcctagtccctgagcagcaatgatgc 509 || | ||||| | | || |||||||| ||||| ||||||||||| || ||||||| Sbjct: 1094 tttaaatccattaaaatggcaccaattgcaagtccgagtccctgagctgcgatgatgc 1037
>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7 Length = 74350 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 392 aagaaccctcctgctagcatgaatgtcatgactgtgactgaagctagagtagttgccttc 451 ||||| ||||| || ||||||||||||||||| || |||||||| | ||| || |||||| Sbjct: 14980 aagaatcctccggcgagcatgaatgtcatgacagttactgaagccaaagtcgtagccttc 15039 Query: 452 tt 453 || Sbjct: 15040 tt 15041
>gb|AC160966.2| Mus musculus BAC clone RP24-362F17 from chromosome 9, complete sequence Length = 129782 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Plus Query: 526 catgctaagaaagaaatgcatggcacttgc 555 |||||||||||||||||| ||||| ||||| Sbjct: 89661 catgctaagaaagaaatgaatggctcttgc 89690
>emb|CT571257.6| Mouse DNA sequence from clone RP24-168J13 on chromosome 9, complete sequence Length = 32114 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Minus Query: 526 catgctaagaaagaaatgcatggcacttgc 555 |||||||||||||||||| ||||| ||||| Sbjct: 18691 catgctaagaaagaaatgaatggctcttgc 18662
>gb|AC165364.2| Mus musculus BAC clone RP23-75J20 from chromosome 3, complete sequence Length = 240679 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 551 cttgctttgaggcctgccatga 572 |||||||||||||||||||||| Sbjct: 45745 cttgctttgaggcctgccatga 45724
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 299 gggtcgtactgcaccttcagcagcagcctgtac 331 ||||||| |||||||||||||| | |||||||| Sbjct: 582530 gggtcgtgctgcaccttcagcaacggcctgtac 582498
>ref|NM_211660.1| Eremothecium gossypii AGL068Wp (AGL068W), mRNA Length = 1866 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 299 gggtcgtactgcaccttcagcagcagcctgtac 331 ||||||| |||||||||||||| | |||||||| Sbjct: 1841 gggtcgtgctgcaccttcagcaacggcctgtac 1809
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 ttcacttgccctgctagccgttcga 174 ||||||||||||||||||| ||||| Sbjct: 974087 ttcacttgccctgctagcccttcga 974063
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tgtgactgaagctagagtag 443 |||||||||||||||||||| Sbjct: 89661 tgtgactgaagctagagtag 89680
>gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, complete sequence Length = 196458 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 agcagcaatgatgctgagaa 515 |||||||||||||||||||| Sbjct: 113081 agcagcaatgatgctgagaa 113100
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tactgcaccttcagcagcag 324 |||||||||||||||||||| Sbjct: 1111838 tactgcaccttcagcagcag 1111857
>gb|AC159430.1| Trypanosoma brucei chromosome 3 clone RPCI93-28C22, complete sequence Length = 142068 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tactgcaccttcagcagcag 324 |||||||||||||||||||| Sbjct: 35739 tactgcaccttcagcagcag 35720
>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence Length = 236163 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 493 ctgagcagcaatgatgctgagaaa 516 ||||||||||||||||||| |||| Sbjct: 91433 ctgagcagcaatgatgctgggaaa 91456
>gb|AC019155.4| Homo sapiens BAC clone RP11-3B12 from 7, complete sequence Length = 176130 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 acttccctacatgcaatcaa 103 |||||||||||||||||||| Sbjct: 17868 acttccctacatgcaatcaa 17849
>gb|AC093026.3| Homo sapiens 12 BAC RP11-307E8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114468 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 aggcctgccatgaagtagac 579 |||||||||||||||||||| Sbjct: 27565 aggcctgccatgaagtagac 27546
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ggaactctctttacaaagaa 396 |||||||||||||||||||| Sbjct: 5403635 ggaactctctttacaaagaa 5403616
>gb|AC110781.3| Homo sapiens BAC clone RP11-383A19 from 7, complete sequence Length = 44985 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 aaatgcatggcacttgcttt 558 |||||||||||||||||||| Sbjct: 33754 aaatgcatggcacttgcttt 33773
>gb|AC005342.1| Homo sapiens 12p13.3 PAC RPCI5-1096D14 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 220257 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 522 tcaacatgctaagaaagaaatgca 545 |||||||||||||| ||||||||| Sbjct: 189164 tcaacatgctaagacagaaatgca 189141
>gb|AC007543.4| Homo sapiens 12p12 BAC RPCI11-1018J8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212176 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 taagaaagaaatgcatggca 550 |||||||||||||||||||| Sbjct: 119567 taagaaagaaatgcatggca 119586
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tgtgactgaagctagagtag 443 |||||||||||||||||||| Sbjct: 19158641 tgtgactgaagctagagtag 19158660
>dbj|AP007293.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34C12, TM0361, complete sequence Length = 108947 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 327 tgtacgtgtggtagttgaaggacaggta 354 ||||||||||||||||||| || ||||| Sbjct: 68295 tgtacgtgtggtagttgaaagataggta 68268 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,191,805 Number of Sequences: 3902068 Number of extensions: 5191805 Number of successful extensions: 88436 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88246 Number of HSP's gapped (non-prelim): 185 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)