ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I17RD_HUMAN (Q8NFM7) Interleukin-17 receptor D precursor (IL-17 ... 33 0.79
2HTPX_XYLFA (Q9PA93) Probable protease htpX homolog (EC 3.4.24.-) 32 1.3
3I17RD_MOUSE (Q8JZL1) Interleukin-17 receptor D precursor (IL-17 ... 31 3.0
4RAGE_BOVIN (Q28173) Advanced glycosylation end product-specific ... 31 3.0
5I17RD_CHICK (Q7T2L7) Interleukin-17 receptor D precursor (IL-17 ... 30 3.9
6EKC1_SCHPO (O74511) Extragenic suppressor of kinetochore protein 1 30 5.1

>I17RD_HUMAN (Q8NFM7) Interleukin-17 receptor D precursor (IL-17 receptor D)|
           (IL-17RD) (Interleukin-17D receptor) (IL-17D receptor)
           (IL17Rhom) (Interleukin-17 receptor-like protein) (Sef
           homolog) (hSef)
          Length = 739

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 236 IGKKMIEDLQELLLSDVYTCYMQDVIMLMWHPGAV 132
           +GK +I D Q + +S  Y C+ Q  + ++W PGA+
Sbjct: 70  VGKHVIADAQNITISQ-YACHDQVAVTILWSPGAL 103



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>HTPX_XYLFA (Q9PA93) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 289

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 378 LLDTVSRTLVTVGSGNP-ICTDVGLSHRA-ETGGKRSDSSVLIDAGLQCNRQEDD 220
           LLDTVSR    VG G P I    G+   A  TG  R+++ V +  GL  N  +D+
Sbjct: 79  LLDTVSRQAEIVGIGRPEIAIYEGVEINAFATGADRNNALVAVSTGLLQNMSQDE 133



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>I17RD_MOUSE (Q8JZL1) Interleukin-17 receptor D precursor (IL-17 receptor D)|
           (IL-17RD) (Interleukin-17D receptor) (IL-17D receptor)
           (Interleukin-17 receptor-like protein) (Sef homolog)
           (mSef)
          Length = 738

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 233 GKKMIEDLQELLLSDVYTCYMQDVIMLMWHPGAV 132
           GK  I D Q + +S  Y C+ Q  + ++W PGA+
Sbjct: 71  GKHAIADAQNITISQ-YACHDQVAVTILWSPGAL 103



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>RAGE_BOVIN (Q28173) Advanced glycosylation end product-specific receptor|
           precursor (Receptor for advanced glycosylation end
           products)
          Length = 416

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 27/112 (24%), Positives = 46/112 (41%)
 Frame = -2

Query: 417 YRAAVYKAKRNPALLDTVSRTLVTVGSGNPICTDVGLSHRAETGGKRSDSSVLIDAGLQC 238
           YR  VY+    P ++D  S  +  V +    C   G  + A T     D   LI  G   
Sbjct: 112 YRVRVYQIPGKPEIVDPASELMAGVPNKVGTCVSEG-GYPAGTLNWLLDGKTLIPDGKGV 170

Query: 237 NRQEDDRRLARATTIRCVYLLHARCNYVNVASGRSYQLRVTVALCYTPSVPK 82
           + +E+ +R  +      ++ LH+    + V   R   L  T +  +TP +P+
Sbjct: 171 SVKEETKRHPKTG----LFTLHSE---LMVTPARGGALHPTFSCSFTPGLPR 215



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>I17RD_CHICK (Q7T2L7) Interleukin-17 receptor D precursor (IL-17 receptor D)|
           (IL-17RD) (Interleukin-17D receptor) (IL-17D receptor)
           (Sef homolog) (cSEF)
          Length = 741

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 236 IGKKMIEDLQELLLSDVYTCYMQDVIMLMWHPGAV 132
           +GK +I D+Q + +S  Y CY Q  + ++W   A+
Sbjct: 72  VGKHVIGDVQNITISQ-YACYEQVAVTILWTANAI 105



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>EKC1_SCHPO (O74511) Extragenic suppressor of kinetochore protein 1|
          Length = 838

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 331 ISRSNSYQRTTNRVQQGRVSLSLIYGSAIEVTSAKPSRPSAMEAGY 468
           + +  +Y    +  +QG+++  ++YG   E+   K ++PS   AGY
Sbjct: 558 MDKDQNYALAVDMFKQGKITEKIVYGQ--ELNDKKVAKPSGFRAGY 601


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,047,185
Number of Sequences: 219361
Number of extensions: 1466053
Number of successful extensions: 2878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2878
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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