ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37o04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y860_RICPR (P41078) Hypothetical protein RP860 30 2.5
2EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa en... 28 5.5

>Y860_RICPR (P41078) Hypothetical protein RP860|
          Length = 204

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 108 HIHICVFPFYFLLTPAIFVSLFIFIMS 28
           HI   +FP ++L  P I ++L +FI++
Sbjct: 16  HISAIIFPMFYLFVPRIAIALLLFIIT 42



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>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane|
           protein) (Pheromone alpha-factor transporter) (Acidic 24
           kDa late endocytic intermediate component)
          Length = 667

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 13  TLTMNRHNKNEKGNKDSGSEEKIERKYTYMY 105
           T +MN  +K+E GN  SG +E     Y Y Y
Sbjct: 47  TPSMNYQHKDEDGNNVSGDKENFLYSYDYYY 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.125    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,458,994
Number of Sequences: 219361
Number of extensions: 155889
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 80,573,946
effective HSP length: 13
effective length of database: 77,722,253
effective search space used: 1865334072
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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