ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37n13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470620.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 306 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcat 325 ||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 306 ctagttgtgattcccttgggtgtagatgtagtcggtgtgagcaactagtgtcctcctcat 247 Query: 326 caggcactcctccacttcttcccctccct 354 ||||||||| ||| || |||||||||||| Sbjct: 246 caggcactcttcctctgcttcccctccct 218
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcat 325 ||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 6988438 ctagttgtgattcccttgggtgtagatgtagtcggtgtgagcaactagtgtcctcctcat 6988379 Query: 326 caggcactcctccacttcttcccctccct 354 ||||||||| ||| || |||||||||||| Sbjct: 6988378 caggcactcttcctctgcttcccctccct 6988350
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcat 325 ||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 93927 ctagttgtgattcccttgggtgtagatgtagtcggtgtgagcaactagtgtcctcctcat 93986 Query: 326 caggcactcctccacttcttcccctccct 354 ||||||||| ||| || |||||||||||| Sbjct: 93987 caggcactcttcctctgcttcccctccct 94015
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcat 325 ||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 6986333 ctagttgtgattcccttgggtgtagatgtagtcggtgtgagcaactagtgtcctcctcat 6986274 Query: 326 caggcactcctccacttcttcccctccct 354 ||||||||| ||| || |||||||||||| Sbjct: 6986273 caggcactcttcctctgcttcccctccct 6986245
>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11, complete sequence Length = 166072 Score = 113 bits (57), Expect = 5e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcat 325 ||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||| Sbjct: 155035 ctagttgtgattcccttgggtgtagatgtagtcggtgtgagcaactagtgtcctcctcat 154976 Query: 326 caggcactcctccacttcttcccctccct 354 ||||||||| ||| || |||||||||||| Sbjct: 154975 caggcactcttcctctgcttcccctccct 154947
>gb|DQ015673.1| Zea mays RFLP core bin marker probe p-csu93 (CBM5.05) mRNA, complete sequence Length = 677 Score = 109 bits (55), Expect = 8e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcat 325 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 400 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgagcaacgtcctcctcat 341 Query: 326 caggcactcct 336 ||||||||||| Sbjct: 340 caggcactcct 330
>tpg|BK000135.1| TPA: TPA_exp: Zea mays putative phytosulfokine peptide precursor (PSK3) mRNA, complete cds Length = 700 Score = 109 bits (55), Expect = 8e-21 Identities = 67/71 (94%) Strand = Plus / Minus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcat 325 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 355 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgagcaacgtcctcctcat 296 Query: 326 caggcactcct 336 ||||||||||| Sbjct: 295 caggcactcct 285
>gb|AC137753.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084M23, complete sequence Length = 134180 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 268 agttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatca 327 ||||||| || |||||||||||||||||||| ||||| || || || ||||||||||||| Sbjct: 113848 agttgtgatttccctgggtgtagatgtagtctgtgtgcgccaccagcgtcctcctcatca 113789 Query: 328 ggcactcctcc 338 |||||||||| Sbjct: 113788 agcactcctcc 113778
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 268 agttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatca 327 ||||||| || |||||||||||||||||||| ||||| || || || ||||||||||||| Sbjct: 50611 agttgtgatttccctgggtgtagatgtagtctgtgtgcgccaccagcgtcctcctcatca 50552 Query: 328 ggcactcctcc 338 |||||||||| Sbjct: 50551 agcactcctcc 50541
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 268 agttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatca 327 ||||||| || |||||||||||||||||||| ||||| || || || ||||||||||||| Sbjct: 19873618 agttgtgatttccctgggtgtagatgtagtctgtgtgcgccaccagcgtcctcctcatca 19873559 Query: 328 ggcactcctcc 338 |||||||||| Sbjct: 19873558 agcactcctcc 19873548
>dbj|AK062316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C04, full insert sequence Length = 737 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 268 agttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatca 327 ||||||| || |||||||||||||||||||| ||||| || || || ||||||||||||| Sbjct: 463 agttgtgatttccctgggtgtagatgtagtctgtgtgcgccaccagcgtcctcctcatca 404 Query: 328 ggcactcctcc 338 |||||||||| Sbjct: 403 agcactcctcc 393
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 268 agttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatca 327 ||||||| || |||||||||||||||||||| ||||| || || || ||||||||||||| Sbjct: 20158523 agttgtgatttccctgggtgtagatgtagtctgtgtgcgccaccagcgtcctcctcatca 20158464 Query: 328 ggcactcctcc 338 |||||||||| Sbjct: 20158463 agcactcctcc 20158453
>tpg|BK000132.1| TPA: TPA_exp: Triticum aestivum putative phytosulfokine peptide precursor (PSK2) mRNA, complete cds Length = 467 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 266 ctagttgtgcttcccctgggtgtagatgtagtcggtgtgagcgacgagggtcct 319 ||||||||||||| ||||||||||||||||||| ||||| ||| |||| ||||| Sbjct: 304 ctagttgtgcttctcctgggtgtagatgtagtccgtgtgcgcggcgagcgtcct 251
>gb|AY842490.1| Zea mays phytosulfokine peptide precursor (PSK1) mRNA, complete cds Length = 572 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 281 ctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatcaggcactc 334 |||||||||||||||||||||||| ||| | || || | |||||||| |||||| Sbjct: 367 ctgggtgtagatgtagtcggtgtgcgcggccagcgtgcgcctcatcatgcactc 314
>tpg|BK000133.1| TPA: TPA_exp: Zea mays putative phytosulfokine peptide precursor (PSK1) mRNA, complete cds Length = 565 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 281 ctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatcaggcactc 334 |||||||||||||||||||||||| ||| | || || | |||||||| |||||| Sbjct: 376 ctgggtgtagatgtagtcggtgtgcgcggccagcgtgcgcctcatcatgcactc 323
>gb|AY108018.1| Zea mays PCO079082 mRNA sequence Length = 590 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 281 ctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatcaggcactc 334 |||||||||||||||||||||||| ||| | || || | |||||||| |||||| Sbjct: 392 ctgggtgtagatgtagtcggtgtgcgcggccagcgtgcgcctcatcatgcactc 339
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 324 atcaggcactcctccacttctt 345 |||||||||||||||||||||| Sbjct: 27745 atcaggcactcctccacttctt 27724
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 324 atcaggcactcctccacttctt 345 |||||||||||||||||||||| Sbjct: 11573810 atcaggcactcctccacttctt 11573789
>dbj|AK063647.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H12, full insert sequence Length = 588 Score = 44.1 bits (22), Expect = 0.41 Identities = 58/70 (82%) Strand = Plus / Minus Query: 281 ctgggtgtagatgtagtcggtgtgagcgacgagggtcctcctcatcaggcactcctccac 340 ||||||||||||||| |||||||| || || ||||||||| |||||||||||| | Sbjct: 313 ctgggtgtagatgtaatcggtgtgcgccgtcagcgtcctcctcgcgaggcactcctcctc 254 Query: 341 ttcttcccct 350 | |||||||| Sbjct: 253 tccttcccct 244
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 324 atcaggcactcctccacttctt 345 |||||||||||||||||||||| Sbjct: 11580250 atcaggcactcctccacttctt 11580229
>emb|AL845521.9| Mouse DNA sequence from clone RP23-359C5 on chromosome 2, complete sequence Length = 128641 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 aggcactcctccacttcttccc 348 |||||||||||||||||||||| Sbjct: 128012 aggcactcctccacttcttccc 127991
>emb|AL845298.5| Mouse DNA sequence from clone RP23-280N11 on chromosome 2, complete sequence Length = 213826 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 aggcactcctccacttcttccc 348 |||||||||||||||||||||| Sbjct: 1371 aggcactcctccacttcttccc 1350
>gb|AC128738.4| Mus musculus BAC clone RP24-106M4 from chromosome 7, complete sequence Length = 148567 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 catgggactgcagaacagacc 138 ||||||||||||||||||||| Sbjct: 8139 catgggactgcagaacagacc 8159
>emb|Z81576.1|CER10E8 Caenorhabditis elegans Cosmid R10E8, complete sequence Length = 38472 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 tctcgtggaaaatggcggagc 438 ||||||||||||||||||||| Sbjct: 38277 tctcgtggaaaatggcggagc 38257
>gb|AC109619.11| Mus musculus chromosome 19, clone RP23-427F6, complete sequence Length = 170072 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 371 ctcctgatcttcctgctccatttcc 395 |||||||||||||||||||| |||| Sbjct: 82213 ctcctgatcttcctgctccacttcc 82237
>dbj|AK134852.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430404K14 product:hypothetical protein, full insert sequence Length = 3570 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 371 ctcctgatcttcctgctccatttcc 395 |||||||||||||||||||| |||| Sbjct: 1164 ctcctgatcttcctgctccacttcc 1188
>ref|NM_075172.1| Caenorhabditis elegans Y37H2C.3 (Y37H2C.3) mRNA, complete cds Length = 1323 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 418 tctcgtggaaaatggcggagc 438 ||||||||||||||||||||| Sbjct: 612 tctcgtggaaaatggcggagc 632
>ref|NM_001033154.1| Mus musculus RIKEN cDNA 5730409K12 gene (5730409K12Rik), mRNA Length = 3570 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 371 ctcctgatcttcctgctccatttcc 395 |||||||||||||||||||| |||| Sbjct: 1164 ctcctgatcttcctgctccacttcc 1188
>gb|AC002365.1|AC002365 Homo sapiens chromosome X clone U177G4, U152H5, U168D5, 174A6, U172D6, and U186B3 from Xp22, complete sequence Length = 196542 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 ctccacttcttcccctccctc 355 ||||||||||||||||||||| Sbjct: 170970 ctccacttcttcccctccctc 170990
>gb|AC147232.4| Mus musculus BAC clone RP23-311C15 from 7, complete sequence Length = 191521 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 catgggactgcagaacagacc 138 ||||||||||||||||||||| Sbjct: 57581 catgggactgcagaacagacc 57601
>gb|AC169036.3| Mus musculus BAC clone RP23-382O15 from chromosome 5, complete sequence Length = 215306 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 ctcctccacttcttcccctccctc 355 ||||||| |||||||||||||||| Sbjct: 97392 ctcctcctcttcttcccctccctc 97369
>gb|AC164397.6| Mus musculus chromosome 1, clone RP23-276M15, complete sequence Length = 196086 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ctcctccacttcttcccctccctc 355 ||||||| |||||||||||||||| Sbjct: 104572 ctcctcctcttcttcccctccctc 104595
>gb|AC160027.16| Mus musculus 10 BAC RP23-192N23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207847 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cctccacttcttcccctccc 353 |||||||||||||||||||| Sbjct: 77700 cctccacttcttcccctccc 77681
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gcctcctgatcttcctgctc 388 |||||||||||||||||||| Sbjct: 3267580 gcctcctgatcttcctgctc 3267599
>ref|XM_476447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 252 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 ctgggtgtagatgtagtcggtgtg 304 ||||||||||||||| |||||||| Sbjct: 237 ctgggtgtagatgtaatcggtgtg 214
>gb|AC114605.11| Mus musculus chromosome 5, clone RP23-373H20, complete sequence Length = 163969 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ctcctccacttcttcccctccctc 355 ||||||| |||||||||||||||| Sbjct: 144396 ctcctcctcttcttcccctccctc 144419
>ref|XM_386156.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05980.1) partial mRNA Length = 2616 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tgtgcttcccctgggtgtag 290 |||||||||||||||||||| Sbjct: 2193 tgtgcttcccctgggtgtag 2174
>gb|AC138225.11| Mus musculus chromosome 1, clone RP23-164F17, complete sequence Length = 239758 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 ctcctccacttcttcccctccctc 355 ||||||| |||||||||||||||| Sbjct: 154492 ctcctcctcttcttcccctccctc 154469
>emb|AL445426.20| Human DNA sequence from clone RP11-62J10 on chromosome 1 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 159117 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 aaatgcctctcttcttaagt 172 |||||||||||||||||||| Sbjct: 48733 aaatgcctctcttcttaagt 48714
>ref|XM_784082.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC584210 (LOC584210), mRNA Length = 1684 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 agcaaccttctcgtggaaaa 429 |||||||||||||||||||| Sbjct: 968 agcaaccttctcgtggaaaa 949
>emb|AL663087.14| Mouse DNA sequence from clone RP23-431M5 on chromosome 11 Contains the 5' end of the Grb10 gene for growth factor receptor bound protein 10, a nucleosome assembly protein 1-like 1 (Nap1l1) pseudogene and three CpG islands, complete sequence Length = 174389 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 atcttcctgctccatttccatctc 400 |||||||||| ||||||||||||| Sbjct: 34231 atcttcctgcaccatttccatctc 34254
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 atttccatctcggctcctgc 409 |||||||||||||||||||| Sbjct: 68678 atttccatctcggctcctgc 68697
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 atttccatctcggctcctgc 409 |||||||||||||||||||| Sbjct: 20455258 atttccatctcggctcctgc 20455277
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ctgggtgtagatgtagtcggtgtg 304 ||||||||||||||| |||||||| Sbjct: 1254322 ctgggtgtagatgtaatcggtgtg 1254345
>gb|AC087884.18| Homo sapiens 12 BAC RP11-416A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 196742 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 tcctgatcttcctgctccatttcc 395 ||||||||| |||||||||||||| Sbjct: 134500 tcctgatctccctgctccatttcc 134523
>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474G09 Length = 169511 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ctgggtgtagatgtagtcggtgtg 304 ||||||||||||||| |||||||| Sbjct: 19157 ctgggtgtagatgtaatcggtgtg 19180
>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0057M23 Length = 168029 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ctgggtgtagatgtagtcggtgtg 304 ||||||||||||||| |||||||| Sbjct: 155929 ctgggtgtagatgtaatcggtgtg 155952
>emb|AJ276693.1|OSA276693 Oryza sativa mRNA for putative phytosulfokine peptide precursor (psk4 gene) Length = 661 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 ctgggtgtagatgtagtcggtgtg 304 ||||||||||||||| |||||||| Sbjct: 303 ctgggtgtagatgtaatcggtgtg 280
>dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1007_H09 Length = 42137 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ctgggtgtagatgtagtcggtgtg 304 ||||||||||||||| |||||||| Sbjct: 23899 ctgggtgtagatgtaatcggtgtg 23922
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 280 cctgggtgtagatgtagtcggtgt 303 |||||||||||| ||||||||||| Sbjct: 2633721 cctgggtgtagaagtagtcggtgt 2633744
>emb|AL954131.8| Mouse DNA sequence from clone RP23-32H12 on chromosome 2, complete sequence Length = 162456 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ctcctccacttcttcccctccctc 355 |||||||||||||||| ||||||| Sbjct: 150238 ctcctccacttcttcctctccctc 150261
>dbj|AP006679.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36G06, TM0372b, complete sequence Length = 38210 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 cttcttcccctccctcgcat 359 |||||||||||||||||||| Sbjct: 24610 cttcttcccctccctcgcat 24591
>emb|AL845552.2|CNS08CBB Human chromosome 14 DNA sequence BAC C-2062F14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 130569 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 cctcctgatcttcctgctcc 389 |||||||||||||||||||| Sbjct: 90358 cctcctgatcttcctgctcc 90377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,231,904 Number of Sequences: 3902068 Number of extensions: 3231904 Number of successful extensions: 67241 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66964 Number of HSP's gapped (non-prelim): 276 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
