ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YKY7_YEAST (Q02205) Hypothetical 20.2 kDa protein in MRPL13-FOX2... 28 4.2
2YCF2_PANGI (Q68RU4) Protein ycf2 28 7.1

>YKY7_YEAST (Q02205) Hypothetical 20.2 kDa protein in MRPL13-FOX2 intergenic|
           region
          Length = 184

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 282 SCLRNHLGEERHIMVIRQKEGY 217
           SC RNH GEE   ++  Q+ GY
Sbjct: 6   SCCRNHSGEENEALLREQQAGY 27



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>YCF2_PANGI (Q68RU4) Protein ycf2|
          Length = 2110

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +1

Query: 82  SAPYYYQSYGPISIPKNLI*IFE--APTEILCICFLYQV---FKFLSPWCIAFL-LADDH 243
           S P+++ S+G I I ++ I I+E   P + LC   L  +      L  W    L L DDH
Sbjct: 682 SLPFFFVSFGNIPIHRSEIYIYELKGPNDQLCNQLLESIGLQIVHLKKWKPFLLDLLDDH 741

Query: 244 D 246
           D
Sbjct: 742 D 742


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,848,929
Number of Sequences: 219361
Number of extensions: 1042723
Number of successful extensions: 1786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1786
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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