ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RF1_MANSM (Q65TB1) Peptide chain release factor 1 (RF-1) 32 1.1
2VATC_SCHPO (Q9HDW6) Vacuolar ATP synthase subunit C (EC 3.6.3.14... 30 4.2
3CAPP_XANOR (Q5GW71) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 29 5.5
4PURA_AZOSE (Q5P7C4) Adenylosuccinate synthetase (EC 6.3.4.4) (IM... 29 7.2
5PTA_MYCTU (P96254) Phosphate acetyltransferase (EC 2.3.1.8) (Pho... 29 7.2
6SUH_XENLA (Q91880) Suppressor of hairless protein homolog (X-Su(H)) 28 9.4
7EFG_CLOAB (Q97EH4) Elongation factor G (EF-G) 28 9.4
8C71BF_ARATH (Q9LW27) Cytochrome P450 71B15 (EC 1.14.-.-) 28 9.4
9EFG2_RALSO (Q8XRM7) Elongation factor G 2 (EF-G 2) 28 9.4

>RF1_MANSM (Q65TB1) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
 Frame = -3

Query: 466 DPEDRFAA-LAI-AFSPGDEHEVKDEDA--LYTTPNELHKWIKMVLDSVPSQQG------ 317
           DP D + A L I A + GDE  +   D   +Y+   E+ +W   VL    S+QG      
Sbjct: 104 DPNDEYNAYLEIRAGTGGDEAGIFAGDLFRMYSRYAEMKRWRVEVLSENESEQGGYKEII 163

Query: 316 ----GDGFHGCXKDE*PGYHPAINSPQRDGRGRIH 224
               GD  +G  K E  G H     P+ + +GRIH
Sbjct: 164 ALVSGDNVYGQLKFE-SGGHRVQRVPKTESQGRIH 197



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>VATC_SCHPO (Q9HDW6) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C|
           subunit) (Vacuolar proton pump C subunit)
          Length = 394

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = -1

Query: 393 MLCTQLPMNYTSGSKWCSIRYHLNKEETDFMDAXRMSDPVIIQRLILLKETVEEEYMKQY 214
           M+  + P+ Y S   W S R+H+NK  ++  D    S+ +  +  I  ++T  ++    +
Sbjct: 97  MVQDKSPLEYVSSFAWNSSRFHMNKTISEISDRI-TSEIISFENDIRTRQTSFQQASSAF 155

Query: 213 INPEDQES 190
            N + ++S
Sbjct: 156 QNMQKKQS 163



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>CAPP_XANOR (Q5GW71) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 904

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 400 DEDALYTTPNELHKWIKMVLDSVPSQQG 317
           D D  YT P+EL   ++++LDS+ + +G
Sbjct: 359 DADGAYTAPSELEDDLQLILDSLQANKG 386



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>PURA_AZOSE (Q5P7C4) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 436

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 362 QVDQNGARFGTISTRRRRISWMPXG 288
           Q+   G  FGT++ R+RR  W+  G
Sbjct: 295 QMSSKGREFGTVTGRKRRCGWLDLG 319



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>PTA_MYCTU (P96254) Phosphate acetyltransferase (EC 2.3.1.8)|
           (Phosphotransacetylase)
          Length = 690

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 327 DGTESSTILIHLCSSLGVVYRASSSLTSCSSPGEKAIARAANLSSGSSIF 476
           D T   T+L+H C + G+V  A+ +      P  + I     +S+ SSIF
Sbjct: 467 DATYFGTMLVHNCHADGMVSGAAHTTAHTVRPALEIIKTVPGISTVSSIF 516



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>SUH_XENLA (Q91880) Suppressor of hairless protein homolog (X-Su(H))|
          Length = 501

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 363 CSSLGVVYRASSSLTSCSSPGEKAIARAANLSSGSS 470
           CS+ G + RA+SSL + + P   +     N+S+ S+
Sbjct: 455 CSAAGAILRANSSLLASNEPNTNSEGSYTNISTNSA 490



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>EFG_CLOAB (Q97EH4) Elongation factor G (EF-G)|
          Length = 687

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 306 FMDAXRMSDPVIIQRLILLKETVEEEYM 223
           F +A   +DPVI++ ++ ++ TV EEYM
Sbjct: 585 FKNAMTKADPVILEPIMKVEVTVPEEYM 612



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>C71BF_ARATH (Q9LW27) Cytochrome P450 71B15 (EC 1.14.-.-)|
          Length = 490

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 357 GSKWCSIRYHLNKEETDFMDAXRMSDPVIIQRLILLKETVEEEY 226
           G+  C I Y +N  E DF +A R+ D ++++   +++ETV  ++
Sbjct: 176 GNIVCRIGYGINLYECDFFEADRVVD-LVLKAEAVIRETVFSDF 218



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>EFG2_RALSO (Q8XRM7) Elongation factor G 2 (EF-G 2)|
          Length = 700

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 306 FMDAXRMSDPVIIQRLILLKETVEEEYMKQYI 211
           F DA R +DP++++ ++ ++    EEYM   I
Sbjct: 595 FKDAMRRADPILLEPMMAVEVETPEEYMGNVI 626


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,740,695
Number of Sequences: 219361
Number of extensions: 1050337
Number of successful extensions: 2907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2907
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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