ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37l10 |
|---|---|
| Clone Library Name | barley_pub |
>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)| (Cucumisin-like serine protease) Length = 757 Score = 57.0 bits (136), Expect = 3e-08 Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = -3 Query: 521 VSNVGGDPKAVYEAKVESPA-GVDAKVTPAKLVFDEEHRSLAYEITLAVAGNPVIVDGKY 345 V++VGG Y KV S GV V PA L F E + +Y +T V + G Sbjct: 679 VTSVGG--AGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKP--SGSN 734 Query: 344 SFGSVTWSDGVHNVTSPIAVTW 279 SFGS+ WSDG H V SP+A++W Sbjct: 735 SFGSIEWSDGKHVVGSPVAISW 756
>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)| (Cucumisin-like protein) Length = 749 Score = 46.2 bits (108), Expect = 5e-05 Identities = 28/84 (33%), Positives = 42/84 (50%) Frame = -3 Query: 521 VSNVGGDPKAVYEAKVESPAGVDAKVTPAKLVFDEEHRSLAYEITLAVAGNPVIVDGKYS 342 V+NVG P +VY A V +P GV+ V P L F + + ++++ V + GK Sbjct: 669 VTNVG-PPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKV---VVKAKQMTPGKIV 724 Query: 341 FGSVTWSDGVHNVTSPIAVTWPES 270 G + W H+V SPI + P S Sbjct: 725 SGLLVWKSPRHSVRSPIVIYSPTS 748
>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)| Length = 731 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = -3 Query: 494 AVYEAKVESPAGVDAKVTPAKLVFDEEHRSLAYEITLAVAGNPVIVDGKYSFGSVTWSDG 315 + Y A + +P G+ V P L F+ ++ TL V G+ + G S+ WSDG Sbjct: 663 STYRAMISAPQGLTISVNPNVLSFNGLGDRKSF--TLTVRGS---IKGFVVSASLVWSDG 717 Query: 314 VHNVTSPIAVT 282 VH V SPI +T Sbjct: 718 VHYVRSPITIT 728
>RPOA_LDVP (Q83017) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3616 Score = 33.9 bits (76), Expect = 0.28 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 12 CKVHTYNFPLCPLVTVCPHSTPIVVCTVVQSGINNIDHEIVLLL 143 C H + P CP+V C H+ VC S N++ E+ +LL Sbjct: 2868 CDYHGHGHPHCPVVLPCGHAVGSGVCEQCSSSAMNLNTELDILL 2911
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 32.3 bits (72), Expect = 0.81 Identities = 22/90 (24%), Positives = 42/90 (46%) Frame = +1 Query: 217 QSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPATARVIS 396 QS +TS +S+Y+ ++ S T++ T +P+L T ++ + P+T + Sbjct: 119 QSVETSTESSVYVSSSSITSSSSTSIVDTTTISPTLTSTSTTPLTTASTSTTPSTDITSA 178 Query: 397 YARLRCSSSNTSLAGVTLASTPAGLSTLAS 486 + +TS+ T +ST ST +S Sbjct: 179 LPTTTSTKLSTSIPTSTTSSTSTTTSTSSS 208
>RPOA_LDVC (Q06502) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3637 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 12 CKVHTYNFPLCPLVTVCPHSTPIVVCTVVQSGINNIDHEIVLLL 143 C H + P CP+V C H+ VC S + +++ E+ LL Sbjct: 2889 CDYHGHGHPHCPVVLPCGHAVGSGVCDGCSSPVMSLNTELDKLL 2932
>XLYB_BACSU (O34391) N-acetylmuramoyl-L-alanine amidase xlyB precursor (EC| 3.5.1.28) (Cell wall hydrolase) (Autolysin) Length = 317 Score = 30.4 bits (67), Expect = 3.1 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = +1 Query: 214 KQSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSL-HVTDPNEYLPSTITGLPATARV 390 K++ +S A+ ++ LSG + G S+ H+TDPN + LP TA Sbjct: 168 KKAAVSSSASEYHVKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLPQTA-- 225 Query: 391 ISYARLRCSSSNTSLAGVTLASTP 462 S ++ +SS +GV ++P Sbjct: 226 -SASKSHAASSYPLPSGVIKVTSP 248
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 30.4 bits (67), Expect = 3.1 Identities = 28/95 (29%), Positives = 38/95 (40%) Frame = +1 Query: 238 ATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPATARVISYARLRCS 417 +TS + S VT T T S T E ST+T P+T+ V S S Sbjct: 408 STSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTSPVTSTVTSSSS 467 Query: 418 SSNTSLAGVTLASTPAGLSTLAS*TAFGSPPTLLT 522 SS T + ST S+ + T+ +P T T Sbjct: 468 SSTTVTTPTSTESTSTSPSSTVT-TSTTAPSTSTT 501
>DXR_MYCTU (P64012) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 413 Score = 30.4 bits (67), Expect = 3.1 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +1 Query: 202 QSKLKQSCDTSVATSLYMDAAPA-LSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPA 378 Q+ + C T+V + +AA A L+G + +V + LH D P+T+ + Sbjct: 314 QAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLD 373 Query: 379 TARVISYARLRCSSSNTSLAGVTLAST 459 R +AR R + + +A V +AST Sbjct: 374 AQR---WARERAQRAVSGMASVAIAST 397
>DXR_MYCBO (P64013) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 413 Score = 30.4 bits (67), Expect = 3.1 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = +1 Query: 202 QSKLKQSCDTSVATSLYMDAAPA-LSGHVTAMGLVTLCTPSLHVTDPNEYLPSTITGLPA 378 Q+ + C T+V + +AA A L+G + +V + LH D P+T+ + Sbjct: 314 QAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLD 373 Query: 379 TARVISYARLRCSSSNTSLAGVTLAST 459 R +AR R + + +A V +AST Sbjct: 374 AQR---WARERAQRAVSGMASVAIAST 397
>PHKG1_RAT (P13286) Phosphorylase b kinase gamma catalytic chain, skeletal| muscle isoform (EC 2.7.11.19) (Phosphorylase kinase gamma subunit 1) Length = 387 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -3 Query: 365 VIVDGKYSFGSVTW---SDGVHNVTSPIAVTWPESAGAA 258 +I+DGKY FGS W SD V ++ S V P+ +A Sbjct: 240 MIMDGKYQFGSPEWDDYSDTVKDLVSRFLVVQPQDRCSA 278
>PHKG1_MOUSE (P07934) Phosphorylase b kinase gamma catalytic chain, skeletal| muscle isoform (EC 2.7.11.19) (Phosphorylase kinase gamma subunit 1) Length = 387 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -3 Query: 365 VIVDGKYSFGSVTW---SDGVHNVTSPIAVTWPESAGAA 258 +I+DGKY FGS W SD V ++ S V P+ +A Sbjct: 240 MIMDGKYQFGSPEWDDYSDTVKDLVSRFLVVQPQDRCSA 278
>MID2_YEAST (P36027) Mating process protein MID2 (Serine-rich protein SMS1)| (Protein kinase A interference protein) Length = 376 Score = 29.6 bits (65), Expect = 5.3 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = +1 Query: 187 SQARAQSKLKQSCDTSVATSLYMDAAPALSGHVTAMGLV-TLCTPSLHVTDPNEYLPSTI 363 S + S S D+S ++S + + A S T+ T + SL T + PSTI Sbjct: 102 SDSSTSSSSSASSDSSSSSSFSISSTSATSESSTSSTQTSTSSSSSLSSTPSSSSSPSTI 161 Query: 364 TGLPATARVISYARLRCSSSNTSLA-GVTLAS 456 T P+T+ S S+ TS+ G T+ S Sbjct: 162 TSAPSTSSTPSTTAYNQGSTITSIINGKTILS 193
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 29.3 bits (64), Expect = 6.9 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +3 Query: 33 FPLCPLVTVCPHSTPIVVC 89 FP CPL CPH+ P VC Sbjct: 265 FPHCPLGRSCPHAHPTKVC 283
>LEU2_GLOVI (Q7NFV7) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 473 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +3 Query: 288 GDGARDIVHAVAPRDG---PERVLAVDDHRVAGHG 383 G G++ IVH +AP G P +A D A HG Sbjct: 104 GSGSQGIVHVIAPEQGFTQPGMTIACGDSHTATHG 138
>EPHA1_HUMAN (P21709) Ephrin type-A receptor 1 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor EPH) Length = 976 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = +2 Query: 92 RRAERNKQHRPRDRTIIMIQEDKLF 166 RRA+R +Q R RDR + +EDKL+ Sbjct: 571 RRAQRQRQQRQRDRATDVDREDKLW 595
>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)| Length = 674 Score = 29.3 bits (64), Expect = 6.9 Identities = 10/16 (62%), Positives = 15/16 (93%) Frame = -1 Query: 136 STISWSMLFIPLCTTV 89 ++I WS+LF+P+CTTV Sbjct: 27 ASIVWSVLFLPICTTV 42
>INSI_ECOLI (P37246) Transposase insI for insertion sequence element IS30B/C/D| Length = 383 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +3 Query: 228 HERRYISL-HGRRPGALRPCHGDGARDIVHAVAPRDGPERVLAVDDHRVAGHGEGDLV 398 H RR SL HGRR G R ++ V ER +D+ R GH EGDLV Sbjct: 188 HLRRSHSLRHGRRHTR------KGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLV 239
>GDF15_RAT (Q9Z0J6) Growth/differentiation factor 15 precursor (GDF-15)| Length = 303 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 123 GRCCLFRSARRCTPRLVWSVDILSPTDIKENYRYGPCIH 7 GRCC + + L WS +LSP ++ + G C H Sbjct: 203 GRCCHLETVQATLEDLGWSDWVLSPRQLQLSMCVGECPH 241
>GDF15_MOUSE (Q9Z0J7) Growth/differentiation factor 15 precursor (GDF-15)| Length = 303 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 123 GRCCLFRSARRCTPRLVWSVDILSPTDIKENYRYGPCIH 7 GRCC + + L WS +LSP ++ + G C H Sbjct: 203 GRCCHLETVQATLEDLGWSDWVLSPRQLQLSMCVGECPH 241
>GDF15_HUMAN (Q99988) Growth/differentiation factor 15 precursor (GDF-15)| (Placental bone morphogenic protein) (Placental TGF-beta) (Macrophage inhibitory cytokine 1) (MIC-1) (Prostate differentiation factor) (NSAID-regulated protein 1) (NRG-1) Length = 308 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -2 Query: 123 GRCCLFRSARRCTPRLVWSVDILSPTDIKENYRYGPC 13 GRCC + R L W+ +LSP +++ G C Sbjct: 208 GRCCRLHTVRASLEDLGWADWVLSPREVQVTMCIGAC 244
>VGLX_EHV1B (P28968) Glycoprotein X precursor| Length = 797 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Frame = +1 Query: 184 PSQARAQSKLKQSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTI 363 P+ S S +S +T+ +AP+ + T++ T + + P+T Sbjct: 65 PTSTHTSSPSSTSTQSS-STAATSSSAPSTASSTTSIPTSTSTETTTTTPTASTTTPTTT 123 Query: 364 TGLPATARVISYARLRCS-SSNTSLAGVTLASTP 462 T P TA + S S+ T+ A T STP Sbjct: 124 TAAPTTAATTTAVTTAASTSAETTTATATATSTP 157
>GLGA1_RHIME (P58393) Glycogen synthase 1 (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase 1) Length = 480 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/68 (27%), Positives = 27/68 (39%) Frame = +1 Query: 184 PSQARAQSKLKQSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTI 363 P KLK+ +L+ A L+ V + L+ L P+L+ D YL ST Sbjct: 42 PGYPSVLKKLKKKKPVGRFDNLFGHPATVLAAEVNGVDLLVLDQPALYARDGGPYLDSTG 101 Query: 364 TGLPATAR 387 P R Sbjct: 102 RDYPDNFR 109
>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor| Length = 866 Score = 28.9 bits (63), Expect = 9.0 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Frame = +1 Query: 184 PSQARAQSKLKQSCDTSVATSLYMDAAPALSGHVTAMGLVTLCTPSLHVTDPNEYLPSTI 363 P+ S S +S +T+ +AP+ + T++ T + + P+T Sbjct: 65 PTSTHTSSPSSTSTQSS-STAATSSSAPSTASSTTSIPTSTSTETTTTTPTASTTTPTTT 123 Query: 364 TGLPATARVISYARLRCS-SSNTSLAGVTLASTP 462 T P TA + S S+ T+ A T STP Sbjct: 124 TAAPTTAATTTAVTTAASTSAETTTATATATSTP 157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,107,028 Number of Sequences: 219361 Number of extensions: 1331928 Number of successful extensions: 4313 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4312 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
