ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal38a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP133_HUMAN (Q6QNK2) Probable G-protein coupled receptor 133 pre... 37 0.073
2PGLR1_SCLSC (Q12708) Endo-polygalacturonase precursor (EC 3.2.1.... 36 0.12
3PGLR2_ARATH (P49063) Exopolygalacturonase clone GBGA483 precurso... 35 0.28
4CR3BB_BACTU (Q06117) Pesticidal crystal protein cry3Bb (Insectic... 35 0.28
5CR3BA_BACTO (P17969) Pesticidal crystal protein cry3Ba (Insectic... 33 0.81
6CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel al... 33 0.81
7CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 32 2.4
8ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disint... 30 6.9
9DMXL1_MOUSE (Q6PNC0) Protein DmX-like 1 (X-like 1 protein) 30 9.0

>GP133_HUMAN (Q6QNK2) Probable G-protein coupled receptor 133 precursor|
           (G-protein coupled receptor PGR25)
          Length = 874

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 25/94 (26%), Positives = 42/94 (44%)
 Frame = -1

Query: 382 SRYFPSLVPTFTANPQIPPSAHRPLATMPLRQRKCI*HPIFILSYFYPCTIWRHLGSSFH 203
           S   PSL  T TA+P +P  A+ P+ T    +RK    P  ILSY    ++         
Sbjct: 255 SSTLPSLFMTSTASPVMPTDAYHPIITNLTEERKTFQSPGVILSYLQNVSL--------- 305

Query: 202 QHLVPKKILFRYRFIKESSGFVQSTLKLIIQFGW 101
              +P K L     +  +  F+++  ++++  GW
Sbjct: 306 --SLPSKSLSEQTALNLTKTFLKAVGEILLLPGW 337



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>PGLR1_SCLSC (Q12708) Endo-polygalacturonase precursor (EC 3.2.1.15) (PG)|
           (Pectinase)
          Length = 380

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
 Frame = -3

Query: 557 ISGITLKDMVGTNISVAGVLSGID------------GDPFTNICLSNINFTIADSAHSAS 414
           +SG+T KD+  + I+  GV+   D            G P T + LSN++ T++ SA +  
Sbjct: 288 VSGVTYKDITLSGITSYGVVIEQDYENGSPTGKPTSGVPITGVTLSNVHGTVSSSATNVY 347

Query: 413 WSCSNISGYSESV 375
             C+  SG++  V
Sbjct: 348 VLCAKCSGWTWDV 360



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>PGLR2_ARATH (P49063) Exopolygalacturonase clone GBGA483 precursor (EC 3.2.1.67)|
           (ExoPG) (Pectinase) (Galacturan
           1,4-alpha-galacturonidase)
          Length = 444

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -3

Query: 557 ISGITLKDMVGTNIS-VAGVLSGIDGDPFTNICLSNINFTIADSAHSASWSCSNISG-YS 384
           +S +T+K + GT+ + VA  L    G P TNI LS+IN         A  +CSNI    S
Sbjct: 369 LSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKPILS 428

Query: 383 ESVFPEPCSDL 351
             + P  C+++
Sbjct: 429 GKLVPAACTEV 439



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>CR3BB_BACTU (Q06117) Pesticidal crystal protein cry3Bb (Insecticidal|
           delta-endotoxin CryIIIB(b)) (Crystaline entomocidal
           protoxin) (74 kDa crystal protein)
          Length = 652

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 578 DPSALPVISGITLKDMVGTNISVAGVLSGIDGDPFTNICLS 456
           + S+  V+   T+KD VGT ISV G + G+ G PF     S
Sbjct: 50  EDSSTEVLDNSTVKDAVGTGISVVGQILGVVGVPFAGALTS 90



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>CR3BA_BACTO (P17969) Pesticidal crystal protein cry3Ba (Insecticidal|
           delta-endotoxin CryIIIB(a)) (Crystaline entomocidal
           protoxin) (75 kDa crystal protein)
          Length = 659

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 560 VISGITLKDMVGTNISVAGVLSGIDGDPFTNICLS 456
           V+   T+KD VGT ISV G + G+ G PF     S
Sbjct: 64  VLDSSTVKDAVGTGISVVGQILGVVGVPFAGALTS 98



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>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
            (Cav3.1c) (NBR13)
          Length = 2377

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 391  DTPSRYFPSLVPTFTANPQIPPSAHRPLATMPLRQRKCI 275
            D P    P   PT+   P++PP    PLA  PLR++  I
Sbjct: 2098 DAPHLLQPHSAPTWGTIPKLPPPGRSPLAQRPLRRQAAI 2136



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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 370  PSLVPTFTANPQIPPSAHRPLATMPLRQRKCI 275
            P   PT+ A P++PP    PLA  PLR++  I
Sbjct: 1983 PHGAPTWGAIPKLPPPGRSPLAQRPLRRQAAI 2014



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>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 20)
           (ADAM-TS 20) (ADAM-TS20)
          Length = 1906

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = -3

Query: 677 YKGCDSIRCPKWKISMLQSKFTGDWSSHPGDHFDPSALPV-------ISGITLKDMVGTN 519
           ++ C++  CPK K    + +     S   G HFD + LP         SGI +KD     
Sbjct: 599 FRSCNTDSCPKGKRDFREKQC----SDFDGKHFDINGLPPNVRWLPKYSGIAVKDRCKLY 654

Query: 518 ISVAGVLS 495
             VAG  S
Sbjct: 655 CRVAGTTS 662



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>DMXL1_MOUSE (Q6PNC0) Protein DmX-like 1 (X-like 1 protein)|
          Length = 3013

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +1

Query: 415  EAECAESAMVKLILERQILVKGSPSIPDKTPAT----EMFVPTMSFRVIPLITGSAEGSK 582
            E+E  +SA  K IL +++L  GSP+    + +     + F+ +M+  ++   + + E   
Sbjct: 1730 ESEFDKSATYKSILRKKVLGIGSPASELSSSSINAHHDPFLRSMAHWILEDYSAALETLI 1789

Query: 583  WSPG*LDQSPVNFD-CNMDIFHFGHLILSHPL 675
              P   D+  V    CN  +F+F + + +HPL
Sbjct: 1790 KQPVTEDEDQVMMSACNPIVFNFYNYLRTHPL 1821


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,514,897
Number of Sequences: 219361
Number of extensions: 2259016
Number of successful extensions: 5714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5697
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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