ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37k18 |
|---|---|
| Clone Library Name | barley_pub |
>UBP35_HUMAN (Q9P2H5) Ubiquitin carboxyl-terminal hydrolase 35 (EC 3.1.2.15)| (Ubiquitin thioesterase 35) (Ubiquitin-specific-processing protease 35) (Deubiquitinating enzyme 35) Length = 1017 Score = 32.7 bits (73), Expect = 0.98 Identities = 21/88 (23%), Positives = 38/88 (43%) Frame = +2 Query: 338 SNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNI 517 S R+E+E G+ ++ +E+ G+ E GEG + E+E V++ Sbjct: 671 SQEERIEREEEGKEERTEKEEVGEEEESTR--------GEGEREKEEEVEEEEEKVEKET 722 Query: 518 AEERREPEQRDSDATKPR*YLSSPHGER 601 +E + ++ DS + P GER Sbjct: 723 EKEAEQEKEEDSLGAGTHPDAAIPSGER 750
>VATI1_TREPA (O83444) V-type ATP synthase subunit I 1 (EC 3.6.3.14) (V-type| ATPase subunit I 1) Length = 622 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -2 Query: 583 RKVSSRLGSVTIALLGLSSLFSDVAFYWAVLIFFLQRGPIAPLSEEITEP--ENSYIGLG 410 + V+ + +V ALLG+ ++F+DV Y + L G I+ E+T P N LG Sbjct: 513 QSVADSMKNVINALLGIVNVFADVMSYIRLWAVGLAGGAISATVNEMTHPLFANFLAFLG 572 Query: 409 VAILFLG 389 + +L G Sbjct: 573 IVLLLFG 579
>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor| Length = 616 Score = 32.0 bits (71), Expect = 1.7 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 12/99 (12%) Frame = +2 Query: 281 VGGR---EAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLL 451 +GGR EAA E+ + + E RR +ERVG+ D++ E +AEAD A + L Sbjct: 346 LGGRGLQEAAEERESAREEEEAEQERRGGEERVGEEDEEAAEA-AEAEADEAERARQNAL 404 Query: 452 -------GE--GSDRAPLQEEDEHRPVKRNIAEERREPE 541 GE D+ +E HR + EE E E Sbjct: 405 LFAEEEDGEAGAEDKRSQEETPGHRRKEAEGTEEGGEEE 443
>IF2_ERWCT (Q6D9A5) Translation initiation factor IF-2| Length = 900 Score = 31.6 bits (70), Expect = 2.2 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 5/160 (3%) Frame = +2 Query: 158 HKKKLLLFYFATXRSTGASQGSKLFL*SQGIAKMAKHLTDTVGGREAAVSFETLQSKVEI 337 H+K+ LL + R S KL L Q + ++ T GG+ +V E +++ + Sbjct: 40 HEKETLLAHLNRDRGNAPS---KLTL--QRKTRSTLNVPST-GGKSKSVQIEVRKTRTYV 93 Query: 338 SN----LRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEH-RP 502 ++ E+E + + + Q Q E LR + A Q + E Sbjct: 94 KRDPIEAQQAEEEEQARREAEEQAQRAAEEQVKREADLRETAEKAKRAADEQAKREAAEK 153 Query: 503 VKRNIAEERREPEQRDSDATKPR*YLSSPHGERYAAAVKL 622 KR++AE+ + Q++ + TKP S +R A A +L Sbjct: 154 AKRDVAEKEKVTNQQNENMTKP---AQSEKAKREAEAAEL 190
>PRGR_CHICK (P07812) Progesterone receptor (PR)| Length = 786 Score = 31.2 bits (69), Expect = 2.8 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Frame = +2 Query: 323 SKVEISNLRRVEKERVGQADQQPQEQNGDAEA-DVAVLGLRYLLGEGSDRAPLQEEDEHR 499 ++V+ R R G Q G+AE DVA+ GL Y + + E+E Sbjct: 2 TEVKSKETRAPSSARDGAVLLQAPPSRGEAEGIDVALDGLLYPRSSDEEEEEEENEEEEE 61 Query: 500 PVKRNIAEERREPEQRDSDATKPR 571 + EE E E+ D D R Sbjct: 62 EEEPQQREEEEEEEEEDRDCPSYR 85
>MFAP1_MOUSE (Q9CQU1) Microfibrillar-associated protein 1| Length = 439 Score = 31.2 bits (69), Expect = 2.8 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +2 Query: 440 RYLLGEGSDRAPLQ---EEDEHRPVKRNIAEERREPEQRDSDAT 562 RY+ G+ D AP++ EEDE + E+ EPE+++ D++ Sbjct: 38 RYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSS 81
>MFAP1_HUMAN (P55081) Microfibrillar-associated protein 1| Length = 439 Score = 31.2 bits (69), Expect = 2.8 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +2 Query: 440 RYLLGEGSDRAPLQ---EEDEHRPVKRNIAEERREPEQRDSDAT 562 RY+ G+ D AP++ EEDE + E+ EPE+++ D++ Sbjct: 38 RYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSS 81
>IF2_YERPS (Q66F60) Translation initiation factor IF-2| Length = 892 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +2 Query: 278 TVGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQ-NGDAEADVAVLGLRYLLG 454 + GG+ +V E + + ++ + + QA ++ +EQ +AEA + Sbjct: 74 STGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKR 133 Query: 455 EGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 568 E ++A + ++ KR AE+ + Q+ + TKP Sbjct: 134 EAEEQAKREAAEK---AKRQAAEKEKVTNQQTDEKTKP 168
>IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2| Length = 892 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +2 Query: 278 TVGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQ-NGDAEADVAVLGLRYLLG 454 + GG+ +V E + + ++ + + QA ++ +EQ +AEA + Sbjct: 74 STGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKR 133 Query: 455 EGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 568 E ++A + ++ KR AE+ + Q+ + TKP Sbjct: 134 EAEEQAKREAAEK---AKRQAAEKEKVTNQQTDEKTKP 168
>GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing factor) (ADF)| (Brevin) Length = 780 Score = 30.8 bits (68), Expect = 3.7 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = +2 Query: 308 FETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEE 487 FE L++ +R + ER G+A E+ G+ EA + VLG + L EG++ ++ Sbjct: 233 FERLKATQVSKGIR--DNERSGRAQVHVSEEGGEPEAMLQVLGPKPALPEGTEDTAKEDA 290 Query: 488 DEHRPVK 508 R K Sbjct: 291 ANRRLAK 297
>FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 437 Score = 30.8 bits (68), Expect = 3.7 Identities = 24/93 (25%), Positives = 39/93 (41%) Frame = +3 Query: 207 EHHKAPSYSYDHKESRRWQNISQIQLEEEKPR*VSKLFSQKLKSVTCEGSKRNG*GRQTS 386 +HH + +DH + +N + Q EEE+P+ K K K EG + ++ + Sbjct: 263 DHHHHHDHDHDHDHEHKSKNKKRKQ-EEEEPKKEHKDKKVKFKKDLEEGPTK----KEKA 317 Query: 387 SPRNKMATPRPM*LFSGSVISSERGAIGPLCRK 485 + TP+ L G VI GP +K Sbjct: 318 ESKKADKTPKRRTLEGGVVIEDRTVGDGPAAKK 350
>THO1_YEAST (P40040) Protein THO1| Length = 218 Score = 30.8 bits (68), Expect = 3.7 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%) Frame = +2 Query: 335 ISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRN 514 + L + ++E G+++ PQEQN + +GS+ A ++E P +N Sbjct: 31 VQRLIKDDEESKGESEVSPQEQNQE---------------QGSEPAAIEE-----PASQN 70 Query: 515 IAE---------ERREPEQRDSDATKPR*YLSSPHGERYAAA 613 I E E EP++ + D KP S+ E AA Sbjct: 71 ITEKKEVSSEPKETNEPKEENKDVQKPSDGPSATASENEQAA 112
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 30.4 bits (67), Expect = 4.9 Identities = 24/90 (26%), Positives = 38/90 (42%) Frame = +2 Query: 380 DQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDA 559 D+ EQ D EA+ GL L+G +EED+ +K EE E E D + Sbjct: 788 DESSSEQESDYEAETTAPGLAALMGGPKAIEEDEEEDDAFVIK----EEEEEVEVEDDEE 843 Query: 560 TKPR*YLSSPHGERYAAAVKLSCGDAIDGI 649 + + +R V + G+A++ I Sbjct: 844 EEK----ADTEVDRKVETVSEAVGEAVEEI 869
>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor| 1) (UBF-1) (Autoantigen NOR-90) Length = 764 Score = 30.4 bits (67), Expect = 4.9 Identities = 19/81 (23%), Positives = 33/81 (40%) Frame = +2 Query: 314 TLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDE 493 TLQSK E +++ + +++ ++NGD+ D G D + EDE Sbjct: 670 TLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSED------------GGDSSESSSEDE 717 Query: 494 HRPVKRNIAEERREPEQRDSD 556 N ++ E + D D Sbjct: 718 SEDGDENEEDDEDEDDDEDDD 738
>EMRY_ECOLI (P52600) Multidrug resistance protein Y| Length = 512 Score = 30.4 bits (67), Expect = 4.9 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 10/64 (15%) Frame = -2 Query: 604 IALAMWGRKVSSRLGSVTIALL-----GLSSLFSDVAFYWAVLIFF-----LQRGPIAPL 455 IA+ + GR ++ R+G + + LL LSSL ++ VLIFF L GP+ PL Sbjct: 68 IAIPVTGR-LAQRIGELRLFLLSVTFFSLSSLMCSLSTNLDVLIFFRVVQGLMAGPLIPL 126 Query: 454 SEEI 443 S+ + Sbjct: 127 SQSL 130
>VG29_BPT4 (P13337) Tail-tube assembly protein Gp29 (Tail length regulator)| (Folylpolyglutamate synthase) (EC 6.3.2.17) (Tetrahydrofolylpolyglutamate synthase) Length = 590 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = +2 Query: 197 RSTGASQGSKLFL*SQGIAKMAKHLTDTVGGREAAVSFETLQSKVEISNLRRVEKERVGQ 376 + G S GSKL + + + T G ++ S T++S + + + E VG Sbjct: 96 KEIGESLGSKL----DKLTSLLEQKIQTAGIQQTGTSLATVESAIPVKVVEDDTAESVGP 151 Query: 377 ADQQPQEQNGDAEAD 421 P+ N D +AD Sbjct: 152 LLPAPEAVNNDPDAD 166
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/50 (38%), Positives = 22/50 (44%) Frame = +2 Query: 452 GEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKPR*YLSSPHGER 601 GEG D DE RP +R +E REP R D PR + G R Sbjct: 921 GEGRDEDRSHRRDEERP-RRLGDDEDREPSLRPDDDRVPRRGMDDDRGPR 969
>PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC| 3.6.1.-) Length = 1186 Score = 30.0 bits (66), Expect = 6.3 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 467 RAPLQEEDEHRPVKRNIAEERREPEQRDSD 556 RA ++ED +RP +R+ + +RR RD D Sbjct: 71 RADYRDEDTYRPSRRDRSRDRRRSRDRDDD 100
>MRAW_PSEPK (Q88N84) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 315 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = +2 Query: 281 VGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQE---QNGDAEADVAVLGLRYLL 451 VGGR A +SF +L+ ++ +R++ K G+AD P+ Q+ E + ++G Sbjct: 236 VGGRLAVISFHSLEDRIVKLFMRKLVK---GEADNLPRNLPVQHKVFEPKIKLIGKAQFA 292 Query: 452 GEGSDRAPLQEEDEHRPVKRNIAEERR 532 E A L+ R +AE+ R Sbjct: 293 SE----AELKANPRSRSAVMRVAEKLR 315
>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1| light chain LC1] Length = 2468 Score = 30.0 bits (66), Expect = 6.3 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Frame = +2 Query: 242 QGIAKMAKHLTDTVGGREAAVSFETLQSKVEISNLRRVEKER-----VGQADQQP--QEQ 400 QG+ + K + G E++ + + + K E E++ V + P E+ Sbjct: 918 QGVDDIEKFEDEGAGFEESSETGD-YEEKAETEEAEEPEEDGEEHVCVSASKHSPTEDEE 976 Query: 401 NGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKPR 571 + AEAD + R + G DRA EED +++ AE+ E + A R Sbjct: 977 SAKAEADAYIREKRESVASGDDRA---EEDMDEAIEKGEAEQSEEEADEEDKAEDAR 1030
>YDG9_SCHPO (Q10496) Hypothetical protein C26F1.09 in chromosome I| Length = 1031 Score = 29.6 bits (65), Expect = 8.3 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Frame = +2 Query: 56 HELISRIEQMNSYTRSLNWTTLFYSDTR*TFTSYHKKKLLL-----FYFATXRSTGASQG 220 HEL S +E+M + +SLN + SD+ H+ L Y AS Sbjct: 888 HELDSSLEEMRNRHKSLNEHFIMLSDSMANLQVEHENMSALLLKEKMYLKNQTVEQASLK 947 Query: 221 SKLFL*SQGIAKMAKHLTDTVGGREAAVSFETLQSKVEISNL 346 S++ + +AK + G A+ E L+ VE +L Sbjct: 948 SEIASLNSQLAKQKSEIEQAFQGDMEAIIAENLEIMVESQSL 989
>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)| [Contains: MAP1 light chain LC1] Length = 2459 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +2 Query: 395 EQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSD 556 E+ AEADV + R + G DRA EED +++ AE+ E + + D Sbjct: 967 EEIAKAEADVHIKEKRESVASGDDRA---EEDMDEALEKGEAEQSEEEGEEEED 1017
>TPR_HUMAN (P12270) Nucleoprotein TPR| Length = 2349 Score = 29.6 bits (65), Expect = 8.3 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 7/98 (7%) Frame = +2 Query: 311 ETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRA------ 472 ET+ +E + + R EKER+ Q QQ Q + E D +L L+ E S+++ Sbjct: 1267 ETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELD--ILPLQEANAELSEKSGMLQAE 1324 Query: 473 -PLQEEDEHRPVKRNIAEERREPEQRDSDATKPR*YLS 583 L EED R RN + +Q+D D + R LS Sbjct: 1325 KKLLEEDVKRWKARN---QHLVSQQKDPDTEEYRKLLS 1359
>ITSN1_RAT (Q9WVE9) Intersectin-1 (EH domain and SH3 domain regulator of| endocytosis 1) Length = 1217 Score = 29.6 bits (65), Expect = 8.3 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 14/108 (12%) Frame = +2 Query: 317 LQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEH 496 + SK ++ R +E ER+ Q +Q+ + + + + ++ + + +Q+E++ Sbjct: 612 IHSKQQLQKQRSIEAERLKQKEQERKSLELEKQKEEGQRRVQERDKQWQEH--VQQEEQQ 669 Query: 497 RP--------------VKRNIAEERREPEQRDSDATKPR*YLSSPHGE 598 RP VK+ AEER +PE +D + L PH E Sbjct: 670 RPRKPHEEDKLKREDSVKKKEAEERAKPEVQDKQSR-----LFHPHQE 712 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,194,375 Number of Sequences: 219361 Number of extensions: 1555167 Number of successful extensions: 5387 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5377 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
