ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37k09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
3emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial se... 105 2e-19
4ref|NM_103713.2| Arabidopsis thaliana unknown protein AT1G48170 ... 86 2e-13
5gb|BT014700.1| Arabidopsis thaliana At1g48170.1 mRNA sequence 86 2e-13
6gb|AY133765.1| Arabidopsis thaliana clone U18923 unknown protein... 86 2e-13
7gb|AY070372.1| Arabidopsis thaliana unknown protein (At1g48170) ... 86 2e-13
8emb|BX817965.1|CNS0AB6F Arabidopsis thaliana Full-length cDNA Co... 86 2e-13
9emb|BX817589.1|CNS0AB4M Arabidopsis thaliana Full-length cDNA Co... 86 2e-13
10gb|BT005744.1| Arabidopsis thaliana clone RAFL16-03-B15 (R50049) 86 2e-13
11gb|AY086896.1| Arabidopsis thaliana clone 29199 mRNA, complete s... 86 2e-13
12gb|AC023673.3|AC023673 Genomic sequence for Arabidopsis thaliana... 72 2e-09
13gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genom... 42 2.0
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.0
15gb|AC016819.8| Homo sapiens chromosome 10 clone RP11-258D21, com... 42 2.0
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
17gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 geno... 42 2.0
18gb|BC075988.1| Danio rerio zgc:92289, mRNA (cDNA clone MGC:92289... 40 8.1
19ref|XM_976875.1| PREDICTED: Mus musculus similar to mortality fa... 40 8.1
20ref|XM_894313.2| PREDICTED: Mus musculus similar to mortality fa... 40 8.1
21gb|AC132303.3| Mus musculus BAC clone RP24-281P9 from chromosome... 40 8.1
22gb|AC112271.4| Mus musculus BAC clone RP24-121H20 from chromosom... 40 8.1
23ref|XM_855337.1| PREDICTED: Canis familiaris similar to heteroge... 40 8.1
24gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's H... 40 8.1
25ref|XM_701547.1| PREDICTED: Danio rerio similar to mortality fac... 40 8.1
26ref|XM_677596.1| PREDICTED: Danio rerio similar to mortality fac... 40 8.1
27gb|AC019235.6| Homo sapiens BAC clone RP11-665C14 from 4, comple... 40 8.1
28emb|BX936387.9| Zebrafish DNA sequence from clone CH211-245M11 i... 40 8.1
29emb|BX890624.9| Zebrafish DNA sequence from clone DKEY-9I9, comp... 40 8.1
30ref|NM_001002604.1| Danio rerio zgc:92289 (zgc:92289), mRNA 40 8.1
31gb|AC160725.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.1
32gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complet... 40 8.1
33emb|AL831727.6| Mouse DNA sequence from clone RP23-210M20 on chr... 40 8.1
34emb|AL805948.9| Mouse DNA sequence from clone RP23-18C13 on chro... 40 8.1

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                           
Query: 327     ctaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtacagatgtga 386
               ||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 4201055 ctaagcgacgggccatgcctgaaccagtgttatcagatgttcctcctagtacagaggtga 4200996

                                
Query: 387     cactcactccatcaccc 403
               |||||||||||| ||||
Sbjct: 4200995 cactcactccattaccc 4200979



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                           
Query: 179     gtggaagcgttagcctctactggtttggatctgatatagcctaaacttctcagcttctct 238
               ||||||| |||| ||||| ||| | ||| ||||| ||| ||||||| ||||| |||||||
Sbjct: 4201365 gtggaagtgttaacctctcctgctctgggtctgacataacctaaacctctcaacttctct 4201306

                                        
Query: 239     acaagtttcctctctgcagcagcct 263
               |  || |||||||||||||||||||
Sbjct: 4201305 atcagcttcctctctgcagcagcct 4201281



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                           
Query: 261     cctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtct 320
               |||| |||||||| |||||||| |||||||| || |||| || ||| || | ||||||||
Sbjct: 4201202 cctcgagcatgggactgtcttttggaatgttgcatgctagaactatgttcaaacctgtct 4201143

                       
Query: 321     tcagcact 328
               ||||||||
Sbjct: 4201142 tcagcact 4201135



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                           
Query: 487     ccttatgatctggaaatggagcgtgacgtcgtgcaggtcctcactgaaacaggtgacctg 546
               |||||| ||||| ||||||||  | || || |||||||||||| |||| || || |||||
Sbjct: 4199737 ccttattatctgaaaatggaggataacatcatgcaggtcctcagtgaagcaagtaacctg 4199678

                                                
Query: 547     cgccccgccttcagaagacagatcacctgaaga 579
               | | || || ||||| ||  |||||||||||||
Sbjct: 4199677 cacacctccctcagatgatggatcacctgaaga 4199645



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                           
Query: 327     ctaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtacagatgtga 386
               ||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 4201042 ctaagcgacgggccatgcctgaaccagtgttatcagatgttcctcctagtacagaggtga 4200983

                                
Query: 387     cactcactccatcaccc 403
               |||||||||||| ||||
Sbjct: 4200982 cactcactccattaccc 4200966



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                           
Query: 179     gtggaagcgttagcctctactggtttggatctgatatagcctaaacttctcagcttctct 238
               ||||||| |||| ||||| ||| | ||| ||||| ||| ||||||| ||||| |||||||
Sbjct: 4201352 gtggaagtgttaacctctcctgctctgggtctgacataacctaaacctctcaacttctct 4201293

                                        
Query: 239     acaagtttcctctctgcagcagcct 263
               |  || |||||||||||||||||||
Sbjct: 4201292 atcagcttcctctctgcagcagcct 4201268



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                           
Query: 261     cctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtct 320
               |||| |||||||| |||||||| |||||||| || |||| || ||| || | ||||||||
Sbjct: 4201189 cctcgagcatgggactgtcttttggaatgttgcatgctagaactatgttcaaacctgtct 4201130

                       
Query: 321     tcagcact 328
               ||||||||
Sbjct: 4201129 tcagcact 4201122



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                           
Query: 487     ccttatgatctggaaatggagcgtgacgtcgtgcaggtcctcactgaaacaggtgacctg 546
               |||||| ||||| ||||||||  | || || |||||||||||| |||| || || |||||
Sbjct: 4199724 ccttattatctgaaaatggaggataacatcatgcaggtcctcagtgaagcaagtaacctg 4199665

                                                
Query: 547     cgccccgccttcagaagacagatcacctgaaga 579
               | | || || ||||| ||  |||||||||||||
Sbjct: 4199664 cacacctccctcagatgatggatcacctgaaga 4199632



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>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09
             of library OSJNBb from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 104999

 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                         
Query: 327   ctaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtacagatgtga 386
             ||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 82728 ctaagcgacgggccatgcctgaaccagtgttatcagatgttcctcctagtacagaggtga 82787

                              
Query: 387   cactcactccatcaccc 403
             |||||||||||| ||||
Sbjct: 82788 cactcactccattaccc 82804



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Plus

                                                                         
Query: 179   gtggaagcgttagcctctactggtttggatctgatatagcctaaacttctcagcttctct 238
             ||||||| |||| ||||| ||| | ||| ||||| ||| ||||||| ||||| |||||||
Sbjct: 82418 gtggaagtgttaacctctcctgctctgggtctgacataacctaaacctctcaacttctct 82477

                                      
Query: 239   acaagtttcctctctgcagcagcct 263
             |  || |||||||||||||||||||
Sbjct: 82478 atcagcttcctctctgcagcagcct 82502



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 261   cctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtct 320
             |||| |||||||| |||||||| |||||||| || |||| || ||| || | ||||||||
Sbjct: 82581 cctcgagcatgggactgtcttttggaatgttgcatgctagaactatgttcaaacctgtct 82640

                     
Query: 321   tcagcact 328
             ||||||||
Sbjct: 82641 tcagcact 82648



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                         
Query: 487   ccttatgatctggaaatggagcgtgacgtcgtgcaggtcctcactgaaacaggtgacctg 546
             |||||| ||||| ||||||||  | || || |||||||||||| |||| || || |||||
Sbjct: 84046 ccttattatctgaaaatggaggataacatcatgcaggtcctcagtgaagcaagtaacctg 84105

                                              
Query: 547   cgccccgccttcagaagacagatcacctgaaga 579
             | | || || ||||| ||  |||||||||||||
Sbjct: 84106 cacacctccctcagatgatggatcacctgaaga 84138



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>ref|NM_103713.2| Arabidopsis thaliana unknown protein AT1G48170 mRNA, complete cds
          Length = 944

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 410 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 351

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 350 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 291

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 290 gatgtaacactcact 276



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>gb|BT014700.1| Arabidopsis thaliana At1g48170.1 mRNA sequence
          Length = 459

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 383 gcctcaagcaagggattgtttttagggatgttgcaagccactattatattgagaccagtc 324

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 323 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 264

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 263 gatgtaacactcact 249



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>gb|AY133765.1| Arabidopsis thaliana clone U18923 unknown protein (At1g48170) mRNA,
           complete cds
          Length = 493

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 386 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 327

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 326 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 267

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 266 gatgtaacactcact 252



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>gb|AY070372.1| Arabidopsis thaliana unknown protein (At1g48170) mRNA, complete cds
          Length = 959

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 409 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 350

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 349 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 290

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 289 gatgtaacactcact 275



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>emb|BX817965.1|CNS0AB6F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL53ZG08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 822

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 385 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 326

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 325 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 266

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 265 gatgtaacactcact 251



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>emb|BX817589.1|CNS0AB4M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL31ZF04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 569

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 384 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 325

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 324 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 265

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 264 gatgtaacactcact 250



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>gb|BT005744.1| Arabidopsis thaliana clone RAFL16-03-B15 (R50049)
          Length = 2771

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 410 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 351

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 350 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 291

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 290 gatgtaacactcact 276



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>gb|AY086896.1| Arabidopsis thaliana clone 29199 mRNA, complete sequence
          Length = 589

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 112/135 (82%)
 Strand = Plus / Minus

                                                                       
Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319
           |||||||||| |||  ||| ||| || ||||| ||||| |  |||||||| ||||| |||
Sbjct: 410 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 351

                                                                       
Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379
           |||| |||||| |  || || ||||  ||||||||||||||||||||||| |||||||| 
Sbjct: 350 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 291

                          
Query: 380 gatgtgacactcact 394
           ||||| |||||||||
Sbjct: 290 gatgtaacactcact 276



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>gb|AC023673.3|AC023673 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I,
             complete sequence
          Length = 109367

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 347   gatccagtgttatcagatgttcctccaagtacagatgtgacactcact 394
             ||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 32170 gatccagtgttatcagatgttccaccaagtaccgatgtaacactcact 32217



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>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence, complete
             sequence
          Length = 55268

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   tttggatctgatatagcctaa 222
             |||||||||||||||||||||
Sbjct: 16135 tttggatctgatatagcctaa 16115



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 202      tttggatctgatatagcctaa 222
                |||||||||||||||||||||
Sbjct: 26596417 tttggatctgatatagcctaa 26596397



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>gb|AC016819.8| Homo sapiens chromosome 10 clone RP11-258D21, complete sequence
          Length = 134050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     atgccctacactcagtaagcc 77
              |||||||||||||||||||||
Sbjct: 107346 atgccctacactcagtaagcc 107326



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 202      tttggatctgatatagcctaa 222
                |||||||||||||||||||||
Sbjct: 26687740 tttggatctgatatagcctaa 26687720



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>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete
              sequence
          Length = 136712

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    tttggatctgatatagcctaa 222
              |||||||||||||||||||||
Sbjct: 119231 tttggatctgatatagcctaa 119211



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>gb|BC075988.1| Danio rerio zgc:92289, mRNA (cDNA clone MGC:92289 IMAGE:7053703),
           complete cds
          Length = 1434

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 ctcagcttctctacaagttt 246
           ||||||||||||||||||||
Sbjct: 799 ctcagcttctctacaagttt 818



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>ref|XM_976875.1| PREDICTED: Mus musculus similar to mortality factor 4 like 1
           (LOC627352), mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 ctcagcttctctacaagttt 246
           ||||||||||||||||||||
Sbjct: 768 ctcagcttctctacaagttt 787



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>ref|XM_894313.2| PREDICTED: Mus musculus similar to mortality factor 4 like 1
           (LOC627352), mRNA
          Length = 1718

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 ctcagcttctctacaagttt 246
           ||||||||||||||||||||
Sbjct: 768 ctcagcttctctacaagttt 787



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>gb|AC132303.3| Mus musculus BAC clone RP24-281P9 from chromosome 19, complete sequence
          Length = 177097

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    ctcagcttctctacaagttt 246
              ||||||||||||||||||||
Sbjct: 102353 ctcagcttctctacaagttt 102334



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>gb|AC112271.4| Mus musculus BAC clone RP24-121H20 from chromosome 19, complete
             sequence
          Length = 170681

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   ctcagcttctctacaagttt 246
             ||||||||||||||||||||
Sbjct: 16098 ctcagcttctctacaagttt 16079



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>ref|XM_855337.1| PREDICTED: Canis familiaris similar to heterogeneous nuclear
           ribonucleoprotein H3 isoform a, transcript variant 4
           (LOC479227), mRNA
          Length = 2739

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 acaagctaaaattatattta 311
           ||||||||||||||||||||
Sbjct: 548 acaagctaaaattatattta 567



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>gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 221396

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     ctttcataaccattagaaat 106
              ||||||||||||||||||||
Sbjct: 196634 ctttcataaccattagaaat 196653



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>ref|XM_701547.1| PREDICTED: Danio rerio similar to mortality factor 4 like 1
           (predicted), transcript variant 2 (LOC572577), mRNA
          Length = 1580

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 ctcagcttctctacaagttt 246
           ||||||||||||||||||||
Sbjct: 804 ctcagcttctctacaagttt 823



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>ref|XM_677596.1| PREDICTED: Danio rerio similar to mortality factor 4 like 1
           (predicted), transcript variant 1 (LOC572577), mRNA
          Length = 1578

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 ctcagcttctctacaagttt 246
           ||||||||||||||||||||
Sbjct: 804 ctcagcttctctacaagttt 823



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>gb|AC019235.6| Homo sapiens BAC clone RP11-665C14 from 4, complete sequence
          Length = 196680

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tttgatattctgtgaacatg 21
              ||||||||||||||||||||
Sbjct: 143562 tttgatattctgtgaacatg 143581



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>emb|BX936387.9| Zebrafish DNA sequence from clone CH211-245M11 in linkage group 18,
             complete sequence
          Length = 71220

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ctcagcttctctacaagttt 246
             ||||||||||||||||||||
Sbjct: 10356 ctcagcttctctacaagttt 10375



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>emb|BX890624.9| Zebrafish DNA sequence from clone DKEY-9I9, complete sequence
          Length = 152103

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    ctcagcttctctacaagttt 246
              ||||||||||||||||||||
Sbjct: 105804 ctcagcttctctacaagttt 105785



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>ref|NM_001002604.1| Danio rerio zgc:92289 (zgc:92289), mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 227 ctcagcttctctacaagttt 246
           ||||||||||||||||||||
Sbjct: 799 ctcagcttctctacaagttt 818



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>gb|AC160725.1| Ornithorhynchus anatinus chromosome UNK clone OABb-130A1, complete
             sequence
          Length = 108108

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 215   tagcctaaacttctcagcttctctacaa 242
             |||||| ||||||||| |||||||||||
Sbjct: 14262 tagccttaacttctcaccttctctacaa 14235



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>gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complete sequence
          Length = 158922

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 288   tgttacaagctaaaattatattta 311
             ||||||||||| ||||||||||||
Sbjct: 79745 tgttacaagcttaaattatattta 79722



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>emb|AL831727.6| Mouse DNA sequence from clone RP23-210M20 on chromosome 4, complete
              sequence
          Length = 176930

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    agatgttcctccaagtacag 380
              ||||||||||||||||||||
Sbjct: 131428 agatgttcctccaagtacag 131409



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>emb|AL805948.9| Mouse DNA sequence from clone RP23-18C13 on chromosome 2, complete
             sequence
          Length = 204871

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   ctctacaagtttcctctctg 254
             ||||||||||||||||||||
Sbjct: 22053 ctctacaagtttcctctctg 22034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,227,844
Number of Sequences: 3902068
Number of extensions: 5227844
Number of successful extensions: 100559
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100387
Number of HSP's gapped (non-prelim): 172
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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