| Clone Name | rbaal37k09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 327 ctaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtacagatgtga 386 ||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| |||| Sbjct: 4201055 ctaagcgacgggccatgcctgaaccagtgttatcagatgttcctcctagtacagaggtga 4200996 Query: 387 cactcactccatcaccc 403 |||||||||||| |||| Sbjct: 4200995 cactcactccattaccc 4200979 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 179 gtggaagcgttagcctctactggtttggatctgatatagcctaaacttctcagcttctct 238 ||||||| |||| ||||| ||| | ||| ||||| ||| ||||||| ||||| ||||||| Sbjct: 4201365 gtggaagtgttaacctctcctgctctgggtctgacataacctaaacctctcaacttctct 4201306 Query: 239 acaagtttcctctctgcagcagcct 263 | || ||||||||||||||||||| Sbjct: 4201305 atcagcttcctctctgcagcagcct 4201281 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 261 cctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtct 320 |||| |||||||| |||||||| |||||||| || |||| || ||| || | |||||||| Sbjct: 4201202 cctcgagcatgggactgtcttttggaatgttgcatgctagaactatgttcaaacctgtct 4201143 Query: 321 tcagcact 328 |||||||| Sbjct: 4201142 tcagcact 4201135 Score = 42.1 bits (21), Expect = 2.0 Identities = 75/93 (80%) Strand = Plus / Minus Query: 487 ccttatgatctggaaatggagcgtgacgtcgtgcaggtcctcactgaaacaggtgacctg 546 |||||| ||||| |||||||| | || || |||||||||||| |||| || || ||||| Sbjct: 4199737 ccttattatctgaaaatggaggataacatcatgcaggtcctcagtgaagcaagtaacctg 4199678 Query: 547 cgccccgccttcagaagacagatcacctgaaga 579 | | || || ||||| || ||||||||||||| Sbjct: 4199677 cacacctccctcagatgatggatcacctgaaga 4199645
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 327 ctaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtacagatgtga 386 ||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| |||| Sbjct: 4201042 ctaagcgacgggccatgcctgaaccagtgttatcagatgttcctcctagtacagaggtga 4200983 Query: 387 cactcactccatcaccc 403 |||||||||||| |||| Sbjct: 4200982 cactcactccattaccc 4200966 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Minus Query: 179 gtggaagcgttagcctctactggtttggatctgatatagcctaaacttctcagcttctct 238 ||||||| |||| ||||| ||| | ||| ||||| ||| ||||||| ||||| ||||||| Sbjct: 4201352 gtggaagtgttaacctctcctgctctgggtctgacataacctaaacctctcaacttctct 4201293 Query: 239 acaagtttcctctctgcagcagcct 263 | || ||||||||||||||||||| Sbjct: 4201292 atcagcttcctctctgcagcagcct 4201268 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 261 cctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtct 320 |||| |||||||| |||||||| |||||||| || |||| || ||| || | |||||||| Sbjct: 4201189 cctcgagcatgggactgtcttttggaatgttgcatgctagaactatgttcaaacctgtct 4201130 Query: 321 tcagcact 328 |||||||| Sbjct: 4201129 tcagcact 4201122 Score = 42.1 bits (21), Expect = 2.0 Identities = 75/93 (80%) Strand = Plus / Minus Query: 487 ccttatgatctggaaatggagcgtgacgtcgtgcaggtcctcactgaaacaggtgacctg 546 |||||| ||||| |||||||| | || || |||||||||||| |||| || || ||||| Sbjct: 4199724 ccttattatctgaaaatggaggataacatcatgcaggtcctcagtgaagcaagtaacctg 4199665 Query: 547 cgccccgccttcagaagacagatcacctgaaga 579 | | || || ||||| || ||||||||||||| Sbjct: 4199664 cacacctccctcagatgatggatcacctgaaga 4199632
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 327 ctaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtacagatgtga 386 ||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| |||| Sbjct: 82728 ctaagcgacgggccatgcctgaaccagtgttatcagatgttcctcctagtacagaggtga 82787 Query: 387 cactcactccatcaccc 403 |||||||||||| |||| Sbjct: 82788 cactcactccattaccc 82804 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 179 gtggaagcgttagcctctactggtttggatctgatatagcctaaacttctcagcttctct 238 ||||||| |||| ||||| ||| | ||| ||||| ||| ||||||| ||||| ||||||| Sbjct: 82418 gtggaagtgttaacctctcctgctctgggtctgacataacctaaacctctcaacttctct 82477 Query: 239 acaagtttcctctctgcagcagcct 263 | || ||||||||||||||||||| Sbjct: 82478 atcagcttcctctctgcagcagcct 82502 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 261 cctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtct 320 |||| |||||||| |||||||| |||||||| || |||| || ||| || | |||||||| Sbjct: 82581 cctcgagcatgggactgtcttttggaatgttgcatgctagaactatgttcaaacctgtct 82640 Query: 321 tcagcact 328 |||||||| Sbjct: 82641 tcagcact 82648 Score = 42.1 bits (21), Expect = 2.0 Identities = 75/93 (80%) Strand = Plus / Plus Query: 487 ccttatgatctggaaatggagcgtgacgtcgtgcaggtcctcactgaaacaggtgacctg 546 |||||| ||||| |||||||| | || || |||||||||||| |||| || || ||||| Sbjct: 84046 ccttattatctgaaaatggaggataacatcatgcaggtcctcagtgaagcaagtaacctg 84105 Query: 547 cgccccgccttcagaagacagatcacctgaaga 579 | | || || ||||| || ||||||||||||| Sbjct: 84106 cacacctccctcagatgatggatcacctgaaga 84138
>ref|NM_103713.2| Arabidopsis thaliana unknown protein AT1G48170 mRNA, complete cds Length = 944 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 410 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 351 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 350 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 291 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 290 gatgtaacactcact 276
>gb|BT014700.1| Arabidopsis thaliana At1g48170.1 mRNA sequence Length = 459 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 383 gcctcaagcaagggattgtttttagggatgttgcaagccactattatattgagaccagtc 324 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 323 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 264 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 263 gatgtaacactcact 249
>gb|AY133765.1| Arabidopsis thaliana clone U18923 unknown protein (At1g48170) mRNA, complete cds Length = 493 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 386 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 327 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 326 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 267 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 266 gatgtaacactcact 252
>gb|AY070372.1| Arabidopsis thaliana unknown protein (At1g48170) mRNA, complete cds Length = 959 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 409 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 350 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 349 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 290 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 289 gatgtaacactcact 275
>emb|BX817965.1|CNS0AB6F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL53ZG08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 822 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 385 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 326 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 325 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 266 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 265 gatgtaacactcact 251
>emb|BX817589.1|CNS0AB4M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL31ZF04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 569 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 384 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 325 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 324 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 265 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 264 gatgtaacactcact 250
>gb|BT005744.1| Arabidopsis thaliana clone RAFL16-03-B15 (R50049) Length = 2771 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 410 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 351 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 350 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 291 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 290 gatgtaacactcact 276
>gb|AY086896.1| Arabidopsis thaliana clone 29199 mRNA, complete sequence Length = 589 Score = 85.7 bits (43), Expect = 2e-13 Identities = 112/135 (82%) Strand = Plus / Minus Query: 260 gcctcaagcatggggctgtctttcggaatgttacaagctaaaattatatttagacctgtc 319 |||||||||| ||| ||| ||| || ||||| ||||| | |||||||| ||||| ||| Sbjct: 410 gcctcaagcaagggattgtttttagggatgttgcaagccagtattatattgagaccagtc 351 Query: 320 ttcagcactaagcggcgggccatgcttgatccagtgttatcagatgttcctccaagtaca 379 |||| |||||| | || || |||| ||||||||||||||||||||||| |||||||| Sbjct: 350 ttcaacactaatctacgcgcaatgccagatccagtgttatcagatgttccaccaagtacc 291 Query: 380 gatgtgacactcact 394 ||||| ||||||||| Sbjct: 290 gatgtaacactcact 276
>gb|AC023673.3|AC023673 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I, complete sequence Length = 109367 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 347 gatccagtgttatcagatgttcctccaagtacagatgtgacactcact 394 ||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 32170 gatccagtgttatcagatgttccaccaagtaccgatgtaacactcact 32217
>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence, complete sequence Length = 55268 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tttggatctgatatagcctaa 222 ||||||||||||||||||||| Sbjct: 16135 tttggatctgatatagcctaa 16115
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tttggatctgatatagcctaa 222 ||||||||||||||||||||| Sbjct: 26596417 tttggatctgatatagcctaa 26596397
>gb|AC016819.8| Homo sapiens chromosome 10 clone RP11-258D21, complete sequence Length = 134050 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 atgccctacactcagtaagcc 77 ||||||||||||||||||||| Sbjct: 107346 atgccctacactcagtaagcc 107326
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tttggatctgatatagcctaa 222 ||||||||||||||||||||| Sbjct: 26687740 tttggatctgatatagcctaa 26687720
>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete sequence Length = 136712 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tttggatctgatatagcctaa 222 ||||||||||||||||||||| Sbjct: 119231 tttggatctgatatagcctaa 119211
>gb|BC075988.1| Danio rerio zgc:92289, mRNA (cDNA clone MGC:92289 IMAGE:7053703), complete cds Length = 1434 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 799 ctcagcttctctacaagttt 818
>ref|XM_976875.1| PREDICTED: Mus musculus similar to mortality factor 4 like 1 (LOC627352), mRNA Length = 1719 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 768 ctcagcttctctacaagttt 787
>ref|XM_894313.2| PREDICTED: Mus musculus similar to mortality factor 4 like 1 (LOC627352), mRNA Length = 1718 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 768 ctcagcttctctacaagttt 787
>gb|AC132303.3| Mus musculus BAC clone RP24-281P9 from chromosome 19, complete sequence Length = 177097 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 102353 ctcagcttctctacaagttt 102334
>gb|AC112271.4| Mus musculus BAC clone RP24-121H20 from chromosome 19, complete sequence Length = 170681 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 16098 ctcagcttctctacaagttt 16079
>ref|XM_855337.1| PREDICTED: Canis familiaris similar to heterogeneous nuclear ribonucleoprotein H3 isoform a, transcript variant 4 (LOC479227), mRNA Length = 2739 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 acaagctaaaattatattta 311 |||||||||||||||||||| Sbjct: 548 acaagctaaaattatattta 567
>gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's Hospital Oakland Research Institute) complete sequence Length = 221396 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ctttcataaccattagaaat 106 |||||||||||||||||||| Sbjct: 196634 ctttcataaccattagaaat 196653
>ref|XM_701547.1| PREDICTED: Danio rerio similar to mortality factor 4 like 1 (predicted), transcript variant 2 (LOC572577), mRNA Length = 1580 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 804 ctcagcttctctacaagttt 823
>ref|XM_677596.1| PREDICTED: Danio rerio similar to mortality factor 4 like 1 (predicted), transcript variant 1 (LOC572577), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 804 ctcagcttctctacaagttt 823
>gb|AC019235.6| Homo sapiens BAC clone RP11-665C14 from 4, complete sequence Length = 196680 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tttgatattctgtgaacatg 21 |||||||||||||||||||| Sbjct: 143562 tttgatattctgtgaacatg 143581
>emb|BX936387.9| Zebrafish DNA sequence from clone CH211-245M11 in linkage group 18, complete sequence Length = 71220 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 10356 ctcagcttctctacaagttt 10375
>emb|BX890624.9| Zebrafish DNA sequence from clone DKEY-9I9, complete sequence Length = 152103 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 105804 ctcagcttctctacaagttt 105785
>ref|NM_001002604.1| Danio rerio zgc:92289 (zgc:92289), mRNA Length = 1434 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ctcagcttctctacaagttt 246 |||||||||||||||||||| Sbjct: 799 ctcagcttctctacaagttt 818
>gb|AC160725.1| Ornithorhynchus anatinus chromosome UNK clone OABb-130A1, complete sequence Length = 108108 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 215 tagcctaaacttctcagcttctctacaa 242 |||||| ||||||||| ||||||||||| Sbjct: 14262 tagccttaacttctcaccttctctacaa 14235
>gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complete sequence Length = 158922 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tgttacaagctaaaattatattta 311 ||||||||||| |||||||||||| Sbjct: 79745 tgttacaagcttaaattatattta 79722
>emb|AL831727.6| Mouse DNA sequence from clone RP23-210M20 on chromosome 4, complete sequence Length = 176930 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 agatgttcctccaagtacag 380 |||||||||||||||||||| Sbjct: 131428 agatgttcctccaagtacag 131409
>emb|AL805948.9| Mouse DNA sequence from clone RP23-18C13 on chromosome 2, complete sequence Length = 204871 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ctctacaagtttcctctctg 254 |||||||||||||||||||| Sbjct: 22053 ctctacaagtttcctctctg 22034 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,227,844 Number of Sequences: 3902068 Number of extensions: 5227844 Number of successful extensions: 100559 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100387 Number of HSP's gapped (non-prelim): 172 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)