ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37j12 |
|---|---|
| Clone Library Name | barley_pub |
>SOXA_RHOSG (P54995) Dibenzothiophene desulfurization enzyme A| Length = 453 Score = 33.1 bits (74), Expect = 0.71 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 5/119 (4%) Frame = -2 Query: 578 LEAAVAGQLLLNEHWIQDLPYDRTGELESLVSFVKNNLDLCKWAAVATVATQAFSLFLAM 399 L A A +N+H D YDR E V + N+ W A V +A +F Sbjct: 140 LNDAEARNFGINQHLEHDARYDRADEFLEAVKKLWNS-----WDEDALVLDKAAGVF--- 191 Query: 398 TLRAMVSPANADY-DSEEDFVVIRRPLLL---AQGAPAYIPTTADPRGAQ-PGLWSSSM 237 PA Y D +++ +R PL + QG P + PRG + G W+ ++ Sbjct: 192 -----ADPAKVHYVDHHGEWLNVRGPLQVPRSPQGEPVILQAGLSPRGRRFAGKWAEAV 245
>BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precursor (BLV-R)| (BLVPCP1) Length = 843 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/62 (32%), Positives = 26/62 (41%) Frame = -3 Query: 568 PWPANSSSTSTGSRICRMTAPESSRASSPLSRTTSTSVNGLLSLPSPRRRSHFSWQ*LYE 389 P N TGSR R P + R ++ +R + G SPRRR H + L Sbjct: 261 PRERNRMPKRTGSRTWRRNPPSTRRRNTRKTRRSGPRTRG-----SPRRRCHQRMRRLLS 315 Query: 388 PW 383 PW Sbjct: 316 PW 317
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -3 Query: 559 ANSSSTSTGSRICRMTAPESSRA-SSPLSRTTSTSVNGLLSLPSPRRRSH 413 ++ SSTSTGS ++ SSR+ SS SR++S+S + PSP RR H Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS--GSPSPSRRRH 131
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -3 Query: 559 ANSSSTSTGSRICRMTAPESSRA-SSPLSRTTSTSVNGLLSLPSPRRRSH 413 ++ SSTSTGS ++ SSR+ SS SR++S+S + PSP RR H Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS--GSPSPSRRRH 131
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -3 Query: 559 ANSSSTSTGSRICRMTAPESSRA-SSPLSRTTSTSVNGLLSLPSPRRRSH 413 ++ SSTSTGS ++ SSR+ SS SR++S+S + PSP RR H Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS--GSPSPSRRRH 131
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -3 Query: 559 ANSSSTSTGSRICRMTAPESSRA-SSPLSRTTSTSVNGLLSLPSPRRRSH 413 ++ SSTSTGS ++ SSR+ SS SR++S+S + PSP RR H Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS--GSPSPSRRRH 131
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -3 Query: 559 ANSSSTSTGSRICRMTAPESSRA-SSPLSRTTSTSVNGLLSLPSPRRRSH 413 ++ SSTSTGS ++ SSR+ SS SR++S+S + PSP RR H Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS--GSPSPSRRRH 131
>PLYA_MYCPO (Q12639) Pectin lyase precursor (EC 4.2.2.10)| Length = 299 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -3 Query: 559 ANSSSTSTGSRICRMTAPESSRASSPLSRTTSTSVNGLLSLPSPRRR 419 A S S+ +R C T+P SR S LS T S +++ SP RR Sbjct: 85 ATSPSSDRTARSCLRTSPSPSRVSRMLSFVTLPSRRSSVAMLSPSRR 131
>ARD1_RAT (P36407) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) (Fragment) Length = 554 Score = 30.8 bits (68), Expect = 3.5 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 17/93 (18%) Frame = -1 Query: 354 RRRFCGHKEAAASCPRCSSLYPYHGRPKRCPAWPMELID--EAKVW--------IELHKR 205 R CGH C C S P HGR RCP + ++ D ++ VW +EL +R Sbjct: 27 RLLLCGH----TVCHDCLSRLPLHGRAIRCP-FDRQVTDLGDSGVWGLKKNFALLELLER 81 Query: 204 LHLQHTGSKCSTATVR-------ICVTDDEAHI 127 L H G + I +DEAH+ Sbjct: 82 LQNGHIGQYGAAEEALGISGESIIRCDEDEAHV 114
>SYN_MYCPN (P75521) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 455 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = -2 Query: 497 ESLVSFVKNNLDLCKWAAVATVATQAFSLFLAMTLRAMVSPANADYDSEEDFVVIRRPLL 318 E + F +NN A + +A + F M +R+++S A DY + DFV++ P+L Sbjct: 113 EHSLEFFRNN---------AYLRVRARTYFAIMKVRSLLSQAIFDYFFKNDFVLVHSPIL 163
>MTR1A_PIG (O02781) Melatonin receptor type 1A (Mel-1A-R) (Mel1a melatonin| receptor) (Fragment) Length = 154 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +2 Query: 89 WHITRYDLCTAYMICASSSVTQI--LTVAVLHFDPVCCRCSRLWSSIHTFASSMSS 250 W+ R LC ++IC + V + L + L +DP C TFA S+SS Sbjct: 13 WYSNRNSLCCVFLICVLTLVAIVPNLCMGTLQYDPRIYSC--------TFAQSVSS 60
>FLII_CAUCR (O05528) Flagellum-specific ATP synthase (EC 3.6.3.14)| Length = 444 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 423 LRGDGSDSSPFTEVEVVLDKGDEALELSGAVIRQILD-PVLVEEELAGHGSF 575 +R DG+ ++P T + VL GD+ E R ILD +++E +A G F Sbjct: 299 IRPDGTTAAPITALFTVLVDGDDHNEPIADATRGILDGHIVMERAIAERGRF 350
>ARD1_MOUSE (Q8BGX0) GTP-binding protein ARD-1 (ADP-ribosylation factor domain| protein 1) (Tripartite motif protein 23) Length = 574 Score = 29.6 bits (65), Expect = 7.9 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 18/94 (19%) Frame = -1 Query: 354 RRRFCGHKEAAASCPRCSSLYPYHGRPKRCPAWPMELID--EAKVW--------IELHKR 205 R CGH C C + P HGR RCP + ++ D ++ VW +EL +R Sbjct: 47 RLLLCGH----TVCHDCLTRLPLHGRAIRCP-FDRQVTDLGDSGVWGLKKNFALLELLER 101 Query: 204 LHLQHTGS--------KCSTATVRICVTDDEAHI 127 L H G S ++ C +DEAH+ Sbjct: 102 LQNGHIGQYGAAEEAIGTSGESIIRC-DEDEAHV 134
>GUAA_DESVH (Q72D86) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 515 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -1 Query: 267 CPAWP-MELIDEAKVWIELHKRLHLQHTGSKC--STATVRICVTDDEAHIIYAV 115 CP W ++L ++VW+ ++ G K TAT+ + DEA IYAV Sbjct: 116 CPLWDGLDLGTTSRVWMSHGDKVKTPPPGFKVVGRTATLEVAAMADEARRIYAV 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,239,692 Number of Sequences: 219361 Number of extensions: 2297570 Number of successful extensions: 7520 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 7102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7498 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
