ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37j12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK098979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C17, full insert sequence Length = 1120 Score = 147 bits (74), Expect = 5e-32 Identities = 163/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Minus Query: 174 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatacttttg 233 ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct: 796 tgcatttggatccagtgtgttgtaggtgtagttgcttg---agttcaatccatacttgtg 740 Query: 234 cctcatcgatgagctccataggccaggctgggcacctcttgggtcggccgtggtagggat 293 ||||| ||||||||||||||| || ||| |||||| | ||||| |||||||| | Sbjct: 739 tctcattcttgagctccataggcctggatggaaacctctagtatcggcggtggtaggaag 680 Query: 294 ataggctggagcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttc 353 ||| || |||||||||||||||| || || |||||||||||||||||||||||||| || Sbjct: 679 ataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatc 620 Query: 354 gctatcatagtc 365 || |||||||| Sbjct: 619 actgtcatagtc 608 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 496 tcgagctctccggtgcggtcatacggcagatcctggatccagtg 539 ||||| ||||| ||||||||||| |||| ||||||||||||||| Sbjct: 477 tcgagttctccagtgcggtcatatggcaaatcctggatccagtg 434 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 595 gccaagatggtatagaagcagaggcagca 623 ||||||||||| |||||||||||| |||| Sbjct: 378 gccaagatggtgtagaagcagaggaagca 350
>dbj|AK120175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033B05, full insert sequence Length = 1693 Score = 139 bits (70), Expect = 1e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Minus Query: 174 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatacttttg 233 ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct: 924 tgcatttggatccagtgtgttgtaggtgtagttgcttg---agttcaatccatacttgtg 868 Query: 234 cctcatcgatgagctccataggccaggctgggcacctcttgggtcggccgtggtagggat 293 ||||| ||||||||||||| | || ||| |||||| | ||||| |||||||| | Sbjct: 867 tctcattcttgagctccataggtctggatggaaacctctagtatcggcggtggtaggaag 808 Query: 294 ataggctggagcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttc 353 ||| || |||||||||||||||| || || |||||||||||||||||||||||||| || Sbjct: 807 ataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatc 748 Query: 354 gctatcatagtc 365 || |||||||| Sbjct: 747 actgtcatagtc 736 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 496 tcgagctctccggtgcggtcatacggcagatcctggatccagtg 539 ||||| ||||| ||||||||||| |||| ||||||||||||||| Sbjct: 605 tcgagttctccagtgcggtcatatggcaaatcctggatccagtg 562
>dbj|AK065285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M13, full insert sequence Length = 1136 Score = 139 bits (70), Expect = 1e-29 Identities = 162/192 (84%), Gaps = 3/192 (1%) Strand = Plus / Minus Query: 174 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatacttttg 233 ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| || Sbjct: 796 tgcatttggatccagtgtgttgtaggtgtagttgcttg---agttcaatccatacttgtg 740 Query: 234 cctcatcgatgagctccataggccaggctgggcacctcttgggtcggccgtggtagggat 293 ||||| ||||||||||||| | || ||| |||||| | ||||| |||||||| | Sbjct: 739 tctcattcttgagctccataggtctggatggaaacctctagtatcggcggtggtaggaag 680 Query: 294 ataggctggagcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttc 353 ||| || |||||||||||||||| || || |||||||||||||||||||||||||| || Sbjct: 679 ataagcgggagcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatc 620 Query: 354 gctatcatagtc 365 || |||||||| Sbjct: 619 actgtcatagtc 608 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 496 tcgagctctccggtgcggtcatacggcagatcctggatccagtg 539 ||||| ||||| ||||||||||| |||| ||||||||||||||| Sbjct: 477 tcgagttctccagtgcggtcatatggcaaatcctggatccagtg 434 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 595 gccaagatggtatagaagcagaggcagca 623 ||||||||||| |||||||||||| |||| Sbjct: 378 gccaagatggtgtagaagcagaggaagca 350
>gb|AY106965.1| Zea mays PCO085091 mRNA sequence Length = 928 Score = 93.7 bits (47), Expect = 7e-16 Identities = 200/251 (79%) Strand = Plus / Minus Query: 384 catggctcgtagagtcattgccaagaaaagtgagaacgcctgcgtggcgacggtagcgac 443 |||||| |||| |||||| |||| || |||||||| |||||| |||||| | | || | Sbjct: 648 catggcccgtaaagtcatagccaggagaagtgagagtgcctgcatggcgaagatggcaag 589 Query: 444 agcagcccatttacagaggtcgaggttgttcttgacaaaggagacgaggctctcgagctc 503 |||| ||||||| || |||||||| || || | || ||||||| | | | | |||||| Sbjct: 588 agcaacccatttgcataggtcgagattattgtggatgaaggagagtaagttgtggagctc 529 Query: 504 tccggtgcggtcatacggcagatcctggatccagtgctcgttgaggaggagttggccggc 563 ||||||||||| | ||||| |||||||||||||||| |||||| || ||| |||| Sbjct: 528 gccggtgcggtcctctggcagttcctggatccagtgctggttgagcgccagatgggcggc 469 Query: 564 cacggcagcttccagcagcatcatcgtcatggccaagatggtatagaagcagaggcagca 623 | |||||||||||||||||||| | |||||| |||||| ||||||||||||||||| Sbjct: 468 gagagcagcttccagcagcatcatagccatggctgggatggtgtagaagcagaggcagca 409 Query: 624 cccgctgttga 634 ||| |||||| Sbjct: 408 tccggtgttga 398
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 85.7 bits (43), Expect = 2e-13 Identities = 103/123 (83%) Strand = Plus / Minus Query: 243 tgagctccataggccaggctgggcacctcttgggtcggccgtggtagggatataggctgg 302 ||||||||||||| | || ||| |||||| | ||||| |||||||| | ||| || || Sbjct: 30666901 tgagctccataggtctggatggaaacctctagtatcggcggtggtaggaagataagcggg 30666842 Query: 303 agcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttcgctatcata 362 |||||||||||||| || || |||||||||||||||||||||||||| || || ||||| Sbjct: 30666841 agcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatcactgtcata 30666782 Query: 363 gtc 365 ||| Sbjct: 30666781 gtc 30666779 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 174 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatact 229 ||||||| |||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 30668057 tgcatttggatccagtgtgttgtaggtgtagttgctt---gagttcaatccatact 30668005
>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1206D04 Length = 130176 Score = 85.7 bits (43), Expect = 2e-13 Identities = 103/123 (83%) Strand = Plus / Minus Query: 243 tgagctccataggccaggctgggcacctcttgggtcggccgtggtagggatataggctgg 302 ||||||||||||| | || ||| |||||| | ||||| |||||||| | ||| || || Sbjct: 69557 tgagctccataggtctggatggaaacctctagtatcggcggtggtaggaagataagcggg 69498 Query: 303 agcaccttgggcaagaagcagcggcctccttatgaccacaaaatcttcttcgctatcata 362 |||||||||||||| || || |||||||||||||||||||||||||| || || ||||| Sbjct: 69497 agcaccttgggcaaccagaagtggcctccttatgaccacaaaatcttcatcactgtcata 69438 Query: 363 gtc 365 ||| Sbjct: 69437 gtc 69435 Score = 67.9 bits (34), Expect = 4e-08 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 174 tgcattttgatccagtgtgttgtaggtgtagtcgcttgtggagttcaatccatact 229 ||||||| |||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 70713 tgcatttggatccagtgtgttgtaggtgtagttgctt---gagttcaatccatact 70661
>gb|AC131761.4| Mus musculus BAC clone RP24-228J4 from chromosome 18, complete sequence Length = 167442 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gctccataggccaggctgggc 266 ||||||||||||||||||||| Sbjct: 158470 gctccataggccaggctgggc 158490
>gb|AC124393.5| Mus musculus BAC clone RP24-331E1 from chromosome 18, complete sequence Length = 171769 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 gctccataggccaggctgggc 266 ||||||||||||||||||||| Sbjct: 137247 gctccataggccaggctgggc 137227
>gb|AC161511.3| Mus musculus chromosome 18, clone RP23-37O16, complete sequence Length = 186860 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 gctccataggccaggctgggc 266 ||||||||||||||||||||| Sbjct: 18642 gctccataggccaggctgggc 18662
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 tgtgcttcgtcatcagtcaca 151 ||||||||||||||||||||| Sbjct: 2035838 tgtgcttcgtcatcagtcaca 2035858
>gb|AF424783.1| Staphylococcus aureus phage phi 13, complete genome Length = 42722 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 tgtgcttcgtcatcagtcaca 151 ||||||||||||||||||||| Sbjct: 32802 tgtgcttcgtcatcagtcaca 32782
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 tgtgcttcgtcatcagtcaca 151 ||||||||||||||||||||| Sbjct: 2093500 tgtgcttcgtcatcagtcaca 2093520
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 tgtgcttcgtcatcagtcaca 151 ||||||||||||||||||||| Sbjct: 2041831 tgtgcttcgtcatcagtcaca 2041851
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 tgtgcttcgtcatcagtcaca 151 ||||||||||||||||||||| Sbjct: 2056592 tgtgcttcgtcatcagtcaca 2056612
>emb|AL672247.8| Mouse DNA sequence from clone RP23-95I19 on chromosome X, complete sequence Length = 224241 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 384 catggctcgtagagtcattgccaag 408 ||||||| ||||||||||||||||| Sbjct: 49544 catggctagtagagtcattgccaag 49520
>ref|XM_512462.1| PREDICTED: Pan troglodytes similar to tropomyosin 4 (LOC455805), mRNA Length = 1338 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 651 gctcgttgaggaggagttgg 670
>ref|XM_528508.1| PREDICTED: Pan troglodytes similar to tropomyosin 4 (LOC473138), mRNA Length = 663 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 285 gctcgttgaggaggagttgg 304
>gb|BT019634.1| Homo sapiens tropomyosin 4 mRNA, complete cds Length = 747 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 171 gctcgttgaggaggagttgg 190
>gb|BT019633.1| Synthetic construct Homo sapiens tropomyosin 4 mRNA, partial cds Length = 747 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 171 gctcgttgaggaggagttgg 190
>gb|AC107447.5| Rattus norvegicus 4 BAC CH230-46D21 (Children's Hospital Oakland Research Institute) complete sequence Length = 133054 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 ttgacaaaggagacgaggct 494 |||||||||||||||||||| Sbjct: 51199 ttgacaaaggagacgaggct 51218
>gb|BC067225.1| Homo sapiens tropomyosin 4, mRNA (cDNA clone MGC:72041 IMAGE:4772340), complete cds Length = 1685 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 241 gctcgttgaggaggagttgg 260
>gb|BC037576.1| Homo sapiens tropomyosin 4, mRNA (cDNA clone MGC:45298 IMAGE:5582453), complete cds Length = 1716 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 287 gctcgttgaggaggagttgg 306
>ref|XM_881767.1| PREDICTED: Bos taurus similar to tropomyosin 4, transcript variant 3 (LOC535277), mRNA Length = 2335 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 405 gctcgttgaggaggagttgg 424
>ref|XM_615314.2| PREDICTED: Bos taurus similar to tropomyosin 4, transcript variant 1 (LOC535277), mRNA Length = 2083 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 153 gctcgttgaggaggagttgg 172
>ref|XM_868523.1| PREDICTED: Bos taurus similar to tropomyosin 4, transcript variant 2 (LOC535277), mRNA Length = 2251 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 321 gctcgttgaggaggagttgg 340
>gb|AF201337.4| Homo sapiens chromosome 8 clone GS1-44D20 map q13.3, complete sequence Length = 93479 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 58792 gctcgttgaggaggagttgg 58811
>gb|AC183602.2| Pan troglodytes BAC clone CH251-350L8 from chromosome 9, complete sequence Length = 165959 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 52676 gctcgttgaggaggagttgg 52695
>emb|AL034488.2|CEY54G11A Caenorhabditis elegans YAC Y54G11A, complete sequence Length = 99415 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 576 cagcagcatcatcgtcatgg 595 |||||||||||||||||||| Sbjct: 92801 cagcagcatcatcgtcatgg 92782
>ref|XM_745050.1| Aspergillus fumigatus Af293 translation regulator Cya5 (Afu1g03930) partial mRNA Length = 3888 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gtgcttcgtcatcagtcaca 151 |||||||||||||||||||| Sbjct: 3535 gtgcttcgtcatcagtcaca 3516
>gb|AC126458.3| Mus musculus BAC clone RP23-154H24 from chromosome 2, complete sequence Length = 203687 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 atggccaagatggtatagaa 611 |||||||||||||||||||| Sbjct: 198162 atggccaagatggtatagaa 198143
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 gtactgcatatatgatatgt 133 |||||||||||||||||||| Sbjct: 1925488 gtactgcatatatgatatgt 1925469
>emb|AL158077.15| Human DNA sequence from clone RP11-471J7 on chromosome 9 Contains the 5' end of the SLC24A2 gene for solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (NCKX2) and a CpG island, complete sequence Length = 159900 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 gcagatcctggatccagtgc 540 |||||||||||||||||||| Sbjct: 103529 gcagatcctggatccagtgc 103510
>emb|X05276.1|HSTM30R Human mRNA for fibroblast tropomyosin TM30 (pl) Length = 2049 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 221 gctcgttgaggaggagttgg 240
>emb|AL355775.1|ATF12M12 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12 Length = 106730 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 tgacttatgtactgcatatatgat 129 |||| ||||||||||||||||||| Sbjct: 87003 tgacctatgtactgcatatatgat 86980
>gb|AC008894.9| Homo sapiens chromosome 19 clone CTD-2231E14, complete sequence Length = 112067 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 41218 gctcgttgaggaggagttgg 41237
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 ccagcagcatcatcgtcatg 594 |||||||||||||||||||| Sbjct: 14162 ccagcagcatcatcgtcatg 14181
>emb|BX511190.8| Zebrafish DNA sequence from clone RP71-80D18 in linkage group 5, complete sequence Length = 156408 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 acatacaaatgtatacagtg 76 |||||||||||||||||||| Sbjct: 81123 acatacaaatgtatacagtg 81142
>emb|CR599958.1| full-length cDNA clone CS0DK009YA24 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1551 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 357 gctcgttgaggaggagttgg 376
>tpg|BK002395.1| TPA: TPA_inf: Drosophila melanogaster HDC12482 (HDC12482) gene, complete cds Length = 3279 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cagcatcatcgtcatggcca 598 |||||||||||||||||||| Sbjct: 2908 cagcatcatcgtcatggcca 2927
>dbj|AK023385.1| Homo sapiens cDNA FLJ13323 fis, clone OVARC1001731, highly similar to TROPOMYOSIN ALPHA CHAIN, FIBROBLAST ISOFORM F2 Length = 1543 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 366 gctcgttgaggaggagttgg 385
>ref|NM_003290.1| Homo sapiens tropomyosin 4 (TPM4), mRNA Length = 2049 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 221 gctcgttgaggaggagttgg 240
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 agcttccagcagcatcatcg 589 |||||||||||||||||||| Sbjct: 851875 agcttccagcagcatcatcg 851856
>ref|XM_939054.1| PREDICTED: Homo sapiens similar to tropomyosin 4 (LOC649969), mRNA Length = 645 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 138 gctcgttgaggaggagttgg 157
>ref|XM_372046.2| PREDICTED: Homo sapiens similar to tropomyosin 4 (LOC389667), mRNA Length = 645 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 138 gctcgttgaggaggagttgg 157
>gb|AC009808.8| Homo sapiens chromosome 8, clone RP11-138K8, complete sequence Length = 173805 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 112366 gctcgttgaggaggagttgg 112385
>ref|NM_001027305.1| Caenorhabditis elegans Daf-16-Dependent Longevity (WT but not daf-16 lifespan increased) family member (ddl-3) (ddl-3) mRNA, complete cds Length = 1188 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 cagcagcatcatcgtcatgg 595 |||||||||||||||||||| Sbjct: 106 cagcagcatcatcgtcatgg 125
>ref|NM_001027304.1| Caenorhabditis elegans Daf-16-Dependent Longevity (WT but not daf-16 lifespan increased) family member (ddl-3) (ddl-3) mRNA, complete cds Length = 1316 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 cagcagcatcatcgtcatgg 595 |||||||||||||||||||| Sbjct: 116 cagcagcatcatcgtcatgg 135
>gb|AC012646.6|AC012646 Drosophila melanogaster, chromosome 3R, region 85A-85B, BAC clone BACR03F16, complete sequence Length = 204681 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 cagcatcatcgtcatggcca 598 |||||||||||||||||||| Sbjct: 129103 cagcatcatcgtcatggcca 129084
>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone BACR33N15, complete sequence Length = 187701 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 cagcatcatcgtcatggcca 598 |||||||||||||||||||| Sbjct: 2540 cagcatcatcgtcatggcca 2521
>gb|AF310722.1|AF310722 Homo sapiens tropomyosin 4-anaplastic lymphoma kinase fusion protein (TPM4-ALK) mRNA, partial cds Length = 966 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 177 gctcgttgaggaggagttgg 196
>gb|AF186110.1|AF186110 Homo sapiens TPM4-ALK fusion oncoprotein type 1 (TPM4-ALK fusion) mRNA, partial cds Length = 883 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 102 gctcgttgaggaggagttgg 121
>gb|AF186109.1|AF186109 Homo sapiens TPM4-ALK fusion oncoprotein type 2 (TPM4-ALK fusion) mRNA, partial cds Length = 716 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 174 gctcgttgaggaggagttgg 193
>gb|AC116849.11| Mus musculus chromosome 19, clone RP24-395F1, complete sequence Length = 168486 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 attttgatccagtgtgttgt 196 |||||||||||||||||||| Sbjct: 78940 attttgatccagtgtgttgt 78921
>gb|AY888321.1| Synthetic construct Homo sapiens clone FLH008636.01X tropomyosin 4 (TPM4) mRNA, complete cds Length = 747 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 171 gctcgttgaggaggagttgg 190
>gb|AY890921.1| Synthetic construct Homo sapiens clone FLH008631.01L tropomyosin 4 (TPM4) mRNA, partial cds Length = 747 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 gctcgttgaggaggagttgg 558 |||||||||||||||||||| Sbjct: 171 gctcgttgaggaggagttgg 190
>gb|AF109296.1|AF109296 Leishmania donovani proton motive P-type ATPase gene locus, complete sequence Length = 15413 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 agcaccttgggcaagaagca 322 |||||||||||||||||||| Sbjct: 11361 agcaccttgggcaagaagca 11342
>gb|AE003679.2| Drosophila melanogaster chromosome 3R, section 17 of 118 of the complete sequence Length = 216994 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 cagcatcatcgtcatggcca 598 |||||||||||||||||||| Sbjct: 14644 cagcatcatcgtcatggcca 14663
>emb|Z82256.1|CEB0513 Caenorhabditis elegans Cosmid B0513, complete sequence Length = 42614 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 576 cagcagcatcatcgtcatgg 595 |||||||||||||||||||| Sbjct: 2218 cagcagcatcatcgtcatgg 2199
>gb|AC134590.5| Mus musculus BAC clone RP23-368K22 from 9, complete sequence Length = 180271 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ggcagatcctggatccagtg 539 |||||||||||||||||||| Sbjct: 107626 ggcagatcctggatccagtg 107607
>emb|AL845515.5| Mouse DNA sequence from clone RP23-256D19 on chromosome 2, complete sequence Length = 137431 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 atggccaagatggtatagaa 611 |||||||||||||||||||| Sbjct: 81809 atggccaagatggtatagaa 81790
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 agcttccagcagcatcatcg 589 |||||||||||||||||||| Sbjct: 768993 agcttccagcagcatcatcg 769012 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,333,660 Number of Sequences: 3902068 Number of extensions: 5333660 Number of successful extensions: 95379 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95129 Number of HSP's gapped (non-prelim): 245 length of query: 636 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 613 effective length of database: 17,143,297,704 effective search space: 10508841492552 effective search space used: 10508841492552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
