ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37j06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYI_DECAR (Q47BK5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 31 3.1
2SYM_STAHJ (Q4L3E7) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 30 5.2

>SYI_DECAR (Q47BK5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 932

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 314 DNWG*KGSSFWWISRGSFAADHAKEVSGLVQGTTRRR 204
           D W   G++ W + RGS AADH       ++G+ + R
Sbjct: 540 DVWFDSGTTHWHVMRGSHAADHTYPADLYLEGSDQHR 576



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>SYM_STAHJ (Q4L3E7) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 659

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +1

Query: 256 AAKEPLLIHQKLLPFYPQLSAKAQIGRWKRATKIYKNQE 372
           A K+P+++ +K  P +P+L  +A+I   K + +  K++E
Sbjct: 504 ALKQPIMVTEKPTPIFPRLDTEAEIAYIKESMQPPKSEE 542


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,940,814
Number of Sequences: 219361
Number of extensions: 1783341
Number of successful extensions: 4045
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4045
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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