ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal37j06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 189 gagaggctatcaagcacgccttcgggtagttccctgaaccaggcctg 235 ||||||||||||||||| ||||| || |||||||||||||| ||||| Sbjct: 21245058 gagaggctatcaagcacaccttctggaagttccctgaaccatgcctg 21245012
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 189 gagaggctatcaagcacgccttcgggtagttccctgaaccaggcctg 235 ||||||||||||||||| ||||| || |||||||||||||| ||||| Sbjct: 21171267 gagaggctatcaagcacaccttctggaagttccctgaaccatgcctg 21171221
>emb|AL713932.4|CNS07YPD Oryza sativa chromosome 12, . BAC OSJNBb0094E08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137571 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 189 gagaggctatcaagcacgccttcgggtagttccctgaaccaggcctg 235 ||||||||||||||||| ||||| || |||||||||||||| ||||| Sbjct: 45142 gagaggctatcaagcacaccttctggaagttccctgaaccatgcctg 45188
>gb|AY364310.1| Oryza sativa (japonica cultivar-group) Rho GTPase activating protein 1 mRNA, partial cds Length = 1350 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 189 gagaggctatcaagcacgccttcgggtagttccctgaaccaggcct 234 ||||||||||||||||| ||||| || |||||||||||||| |||| Sbjct: 410 gagaggctatcaagcacaccttctggaagttccctgaaccatgcct 365
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 177 acttgctccggtgagaggctatcaagcacgccttcgggtagttccctgaaccaggcctga 236 |||||||| |||||||||||||| || || || || || ||||| ||||||||||||||| Sbjct: 12652901 acttgctcaggtgagaggctatccagtacaccctcagggagttctctgaaccaggcctga 12652960
>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0492E07 Length = 143794 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 177 acttgctccggtgagaggctatcaagcacgccttcgggtagttccctgaaccaggcctga 236 |||||||| |||||||||||||| || || || || || ||||| ||||||||||||||| Sbjct: 27371 acttgctcaggtgagaggctatccagtacaccctcagggagttctctgaaccaggcctga 27430
>ref|XM_477664.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1740 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 177 acttgctccggtgagaggctatcaagcacgccttcgggtagttccctgaaccaggcct 234 |||||||| |||||||||||||| || || || || || ||||| ||||||||||||| Sbjct: 716 acttgctcaggtgagaggctatccagtacaccctcagggagttctctgaaccaggcct 659
>dbj|AK103596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133E02, full insert sequence Length = 1740 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 177 acttgctccggtgagaggctatcaagcacgccttcgggtagttccctgaaccaggcct 234 |||||||| |||||||||||||| || || || || || ||||| ||||||||||||| Sbjct: 716 acttgctcaggtgagaggctatccagtacaccctcagggagttctctgaaccaggcct 659
>ref|XM_467849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1609 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 259 gcaaaggagcctctactaatccaccaaaaactgctccctttttatccccaa 309 |||| |||||||| ||||| || ||||||||||| || | ||||||||||| Sbjct: 981 gcaatggagcctcaactaaaccgccaaaaactgcaccttctttatccccaa 931
>emb|AL499604.9| Human DNA sequence from clone RP11-23B15 on chromosome 9 Contains FOXE1 gene for forkhead box E1 (thyroid transcription factor 2), HEMGN gene for hemogen, 2 novel genes and 5 CpG islands, complete sequence Length = 160796 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 14 gaattagcaaaacgaacaaaatt 36 ||||||||||||||||||||||| Sbjct: 23956 gaattagcaaaacgaacaaaatt 23934
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 259 gcaaaggagcctctactaatccaccaaaaactgctccctttttatccccaa 309 |||| |||||||| ||||| || ||||||||||| || | ||||||||||| Sbjct: 31728279 gcaatggagcctcaactaaaccgccaaaaactgcaccttctttatccccaa 31728229 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 aaacaaatcatcttttcttct 533 ||||||||||||||||||||| Sbjct: 28792021 aaacaaatcatcttttcttct 28792041
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 259 gcaaaggagcctctactaatccaccaaaaactgctccctttttatccccaa 309 |||| |||||||| ||||| || ||||||||||| || | ||||||||||| Sbjct: 24077 gcaatggagcctcaactaaaccgccaaaaactgcaccttctttatccccaa 24027
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 259 gcaaaggagcctctactaatccaccaaaaactgctccctttttatccccaa 309 |||| |||||||| ||||| || ||||||||||| || | ||||||||||| Sbjct: 108066 gcaatggagcctcaactaaaccgccaaaaactgcaccttctttatccccaa 108016
>dbj|AK101362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035I12, full insert sequence Length = 2339 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 259 gcaaaggagcctctactaatccaccaaaaactgctccctttttatccccaa 309 |||| |||||||| ||||| || ||||||||||| || | ||||||||||| Sbjct: 1306 gcaatggagcctcaactaaaccgccaaaaactgcaccttctttatccccaa 1256
>dbj|AK060979.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-G05, full insert sequence Length = 1609 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 259 gcaaaggagcctctactaatccaccaaaaactgctccctttttatccccaa 309 |||| |||||||| ||||| || ||||||||||| || | ||||||||||| Sbjct: 981 gcaatggagcctcaactaaaccgccaaaaactgcaccttctttatccccaa 931
>emb|CT573039.4| Wallaby DNA sequence from clone MEKBa-403O8, complete sequence Length = 76601 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 357 atacaaaaatcaagagaagcatt 379 ||||||||||||||||||||||| Sbjct: 9403 atacaaaaatcaagagaagcatt 9381
>gb|AC113586.14| Mus musculus chromosome 8, clone RP23-17D24, complete sequence Length = 206445 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 354 aatatacaaaaatcaagagaag 375 |||||||||||||||||||||| Sbjct: 163196 aatatacaaaaatcaagagaag 163217
>gb|BT017521.1| Zea mays clone EL01N0421B08.c mRNA sequence Length = 1069 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 267 gcctctactaatccaccaaaaactgctccctttttatcccca 308 ||||| ||||| ||||||||||||| || |||||||||||| Sbjct: 474 gcctcaactaaaccaccaaaaactgtgccttttttatcccca 433
>gb|AC112997.10| Mus musculus chromosome 8, clone RP24-484I6, complete sequence Length = 191413 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 354 aatatacaaaaatcaagagaag 375 |||||||||||||||||||||| Sbjct: 168394 aatatacaaaaatcaagagaag 168373
>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence Length = 174487 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 356 tatacaaaaatcaagagaagca 377 |||||||||||||||||||||| Sbjct: 133401 tatacaaaaatcaagagaagca 133422
>gb|AY068245.1| Schmidtea mediterranea clone H.85.3h(T3) unknown mRNA sequence Length = 600 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 462 agaagagcgaaattgtttgctc 483 |||||||||||||||||||||| Sbjct: 397 agaagagcgaaattgtttgctc 418
>gb|AC118710.7| Mus musculus chromosome 15, clone RP24-121C9, complete sequence Length = 175437 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 gtaaacaaatcatcttttctt 531 ||||||||||||||||||||| Sbjct: 142082 gtaaacaaatcatcttttctt 142062
>emb|AL683829.15| Mouse DNA sequence from clone RP23-64F17 on chromosome 4 Contains two novel genes, the gene for a novel major urinary protein (Mup) family member, the Zfp37 gene for zinc finger protein 37, the Slc31a2 gene for solute carrier family 31 member 2 and two CpG islands, complete sequence Length = 223133 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 gtaaacaaatcatcttttctt 531 ||||||||||||||||||||| Sbjct: 109827 gtaaacaaatcatcttttctt 109807
>gb|AC132878.13| Mus musculus chromosome 15, clone RP24-223D21, complete sequence Length = 145479 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 gtaaacaaatcatcttttctt 531 ||||||||||||||||||||| Sbjct: 141075 gtaaacaaatcatcttttctt 141095
>emb|BX005327.9| Zebrafish DNA sequence from clone DKEY-65B16 in linkage group 7, complete sequence Length = 237129 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 atacaaaaatcaagagaagca 377 ||||||||||||||||||||| Sbjct: 144005 atacaaaaatcaagagaagca 143985
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 aaacaaatcatcttttcttct 533 ||||||||||||||||||||| Sbjct: 108594 aaacaaatcatcttttcttct 108614
>emb|BX004790.9| Zebrafish DNA sequence from clone CH211-215J7 in linkage group 7, complete sequence Length = 209666 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 atacaaaaatcaagagaagca 377 ||||||||||||||||||||| Sbjct: 94602 atacaaaaatcaagagaagca 94582
>dbj|AP000445.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-78H16, complete sequences Length = 125356 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 agctaaaaatatgtatgtaaacaaa 519 ||||||||||| ||||||||||||| Sbjct: 5915 agctaaaaataagtatgtaaacaaa 5891
>dbj|AP001350.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-55A18, complete sequences Length = 142604 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 agctaaaaatatgtatgtaaacaaa 519 ||||||||||| ||||||||||||| Sbjct: 86341 agctaaaaataagtatgtaaacaaa 86317
>gb|AC078897.20| Mus musculus strain C57BL/6J chromosome 3 clone rp23-105k2, complete sequence Length = 200088 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 gtaaacaaatcatcttttctt 531 ||||||||||||||||||||| Sbjct: 116090 gtaaacaaatcatcttttctt 116110
>gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, complete sequence Length = 232792 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 gtaaacaaatcatcttttctt 531 ||||||||||||||||||||| Sbjct: 67177 gtaaacaaatcatcttttctt 67157
>gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, complete sequence Length = 159923 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 gtaaacaaatcatcttttctt 531 ||||||||||||||||||||| Sbjct: 110187 gtaaacaaatcatcttttctt 110167
>emb|AL691489.20| Mouse DNA sequence from clone RP23-176N9 on chromosome 2, complete sequence Length = 194864 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 gtaaacaaatcatcttttctt 531 ||||||||||||||||||||| Sbjct: 62848 gtaaacaaatcatcttttctt 62868
>gb|AC169504.1| Mus musculus BAC clone RP23-416K3 from chromosome 17, complete sequence Length = 215554 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 aagtcagaagctaaaaatat 506 |||||||||||||||||||| Sbjct: 58166 aagtcagaagctaaaaatat 58185
>ref|XM_363815.1| Magnaporthe grisea 70-15 hypothetical protein (MG01741.4) partial mRNA Length = 9996 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 aacggcacagaagagcgaaa 473 |||||||||||||||||||| Sbjct: 6703 aacggcacagaagagcgaaa 6722
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01, complete sequence Length = 142752 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ccacaacttgtcaaccttgg 142 |||||||||||||||||||| Sbjct: 119777 ccacaacttgtcaaccttgg 119796
>gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, complete sequence Length = 228046 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 ctgatacttcctttgcatga 252 |||||||||||||||||||| Sbjct: 169474 ctgatacttcctttgcatga 169455
>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome Length = 490885 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aaaattgcacaatagaataa 50 |||||||||||||||||||| Sbjct: 256618 aaaattgcacaatagaataa 256637
>emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in linkage group 6, complete sequence Length = 178487 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 aaaagcagtacctactgtac 413 |||||||||||||||||||| Sbjct: 154318 aaaagcagtacctactgtac 154337
>gb|AC120120.2| Homo sapiens chromosome 5 clone RP11-458K15, complete sequence Length = 126549 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 actaaaatatacaaaaatca 368 |||||||||||||||||||| Sbjct: 51231 actaaaatatacaaaaatca 51212
>ref|XM_652364.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (2.t00012) partial mRNA Length = 1824 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tactaatccaccaaaaactg 291 |||||||||||||||||||| Sbjct: 1341 tactaatccaccaaaaactg 1360
>gb|AC005060.3| Homo sapiens BAC clone CTB-86D3 from 7, complete sequence Length = 120169 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 370 gagaagcattgttctaaccaaaacaaaa 397 |||||||||||||||| |||||||||| Sbjct: 101531 gagaagcattgttctagacaaaacaaaa 101558
>ref|XM_501439.1| Yarrowia lipolytica CLIB122, YALI0C04389g predicted mRNA Length = 753 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 aaaaactgctccctttttatcccc 307 |||||||||||||||||| ||||| Sbjct: 318 aaaaactgctccctttttttcccc 341
>emb|AL356356.17| Human DNA sequence from clone RP11-54A4 on chromosome 1 Contains the 3' end of the gene for a novel protein (KIAA0460), the gene for threonyl-tRNA synthetase (FLJ12528), the ECM1 gene for extracellular matrix protein 1, the TSRC1 gene for thrombospondin repeat containing 1, two novel genes, the MCL1 gene for myeloid cell leukemia sequence 1 (BCL2-related), the ENSA gene for endosulfine alpha, the 3' end of the gene for GPP34-related protein (GPP34R) and two CpG islands, complete sequence Length = 176550 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 actaaaatatacaaaaatca 368 |||||||||||||||||||| Sbjct: 137747 actaaaatatacaaaaatca 137728
>emb|AL162386.17| Human DNA sequence from clone RP11-272P10 on chromosome 9 Contains the 5' end of the MPDZ gene for multiple PDZ domain protein, a novel gene, an inhibitor of growth family member 1 (ING1) pseudogene and a CpG island, complete sequence Length = 164138 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 atacaaaaatcaagagaagc 376 |||||||||||||||||||| Sbjct: 30470 atacaaaaatcaagagaagc 30489
>emb|AL139319.16| Human DNA sequence from clone RP11-131J24 on chromosome 13q22.1-31.1 Contains the 5' end of a novel gene (contains FLJ13449, possible ortholog of mouse 2810449K13Rik protein) and a CpG island, complete sequence Length = 62837 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 277 atccaccaaaaactgctccctttttatc 304 |||||||||||||||||| |||||||| Sbjct: 59794 atccaccaaaaactgctcattttttatc 59821
>emb|AL117378.15|HSJ131F15 Human DNA sequence from clone RP1-131F15 on chromosome 6q22.33-23.3 Contains the 5' end of a novel gene, the 3' end of the ENPP1 gene for ectonucleotide pyrophosphatase/phosphodiesterase 1 and a T-cell activation leucine repeat-rich protein (TA-LRRP) pseudogene, complete sequence Length = 90890 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tcatcttttcttctggtgat 539 |||||||||||||||||||| Sbjct: 6307 tcatcttttcttctggtgat 6326
>gb|AC158585.3| Mus musculus chromosome 5, clone RP24-250F5, complete sequence Length = 158066 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 atgtaaacaaatcatctttt 528 |||||||||||||||||||| Sbjct: 37820 atgtaaacaaatcatctttt 37839
>gb|AC157917.4| Mus musculus chromosome 3, clone RP23-120L6, complete sequence Length = 206959 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aaaatatacaaaaatcaaga 371 |||||||||||||||||||| Sbjct: 149846 aaaatatacaaaaatcaaga 149865
>emb|AL672225.15| Mouse DNA sequence from clone RP23-384G1 on chromosome 11 Contains the 5' end of the Spnb2 gene for spectrin beta 2 and a CpG island, complete sequence Length = 172823 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aaaatatacaaaaatcaaga 371 |||||||||||||||||||| Sbjct: 121410 aaaatatacaaaaatcaaga 121429
>gb|AC120128.17| Mus musculus chromosome 5, clone RP23-181F22, complete sequence Length = 213246 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 atgtaaacaaatcatctttt 528 |||||||||||||||||||| Sbjct: 26219 atgtaaacaaatcatctttt 26200
>gb|AC079628.20| Homo sapiens 12 BAC RP11-688K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114632 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 aaatcatcttttcttctggt 536 |||||||||||||||||||| Sbjct: 83249 aaatcatcttttcttctggt 83230
>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence Length = 195101 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 tctggtgatccacacagcaa 550 |||||||||||||||||||| Sbjct: 155677 tctggtgatccacacagcaa 155658
>gb|AC114301.2| Homo sapiens chromosome 5 clone RP11-143L23, complete sequence Length = 162976 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 actaaaatatacaaaaatca 368 |||||||||||||||||||| Sbjct: 36793 actaaaatatacaaaaatca 36812
>gb|AC110721.1| Homo sapiens chromosome 5 clone RP11-520E18, complete sequence Length = 164525 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 actaaaatatacaaaaatca 368 |||||||||||||||||||| Sbjct: 61700 actaaaatatacaaaaatca 61681
>emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in linkage group 24, complete sequence Length = 213917 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 caaaattgcacaatagaata 49 |||||||||||||||||||| Sbjct: 110598 caaaattgcacaatagaata 110617
>gb|AC161601.4| Mus musculus BAC clone RP23-333L19 from chromosome 3, complete sequence Length = 200393 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 aaaatatacaaaaatcaaga 371 |||||||||||||||||||| Sbjct: 94540 aaaatatacaaaaatcaaga 94521
>gb|AC151522.2| Medicago truncatula chromosome 2 BAC clone mte1-61m1, complete sequence Length = 106105 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 aacaaatcatcttttcttct 533 |||||||||||||||||||| Sbjct: 85968 aacaaatcatcttttcttct 85987
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 aatagaataatggcacatctgcta 64 ||||||| |||||||||||||||| Sbjct: 382191 aatagaacaatggcacatctgcta 382168
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ccacaacttgtcaaccttgg 142 |||||||||||||||||||| Sbjct: 13436314 ccacaacttgtcaaccttgg 13436333
>gb|AC156601.2| Laccaria bicolor clone JGIAHZW-5X, complete sequence Length = 39995 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 caattatctgccaaagcacaaata 330 ||||||||||| |||||||||||| Sbjct: 333 caattatctgcaaaagcacaaata 310
>gb|AC084496.1|CBRG11A11 Caenorhabditis briggsae cosmid G11A11, complete sequence Length = 41744 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gcaaaacgaacaaaattgca 39 |||||||||||||||||||| Sbjct: 20764 gcaaaacgaacaaaattgca 20783
>gb|AC128708.8| Homo sapiens 12 BAC RP11-714L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 102748 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tatacaaaaatcaagagaag 375 |||||||||||||||||||| Sbjct: 8930 tatacaaaaatcaagagaag 8911
>emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in linkage group 4, complete sequence Length = 186500 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aacaaaattgcacaatagaa 47 |||||||||||||||||||| Sbjct: 3789 aacaaaattgcacaatagaa 3770
>dbj|AK129725.1| Homo sapiens cDNA FLJ26214 fis, clone ADG07946 Length = 1857 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 actaaaatatacaaaaatca 368 |||||||||||||||||||| Sbjct: 1513 actaaaatatacaaaaatca 1532
>gb|AC002427.1|AC002427 Homo sapiens BAC clone GS1-11E15 from 5q31, complete sequence Length = 101098 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 actaaaatatacaaaaatca 368 |||||||||||||||||||| Sbjct: 96573 actaaaatatacaaaaatca 96554
>gb|AC148295.3| Mus musculus BAC clone RP24-346N5 from 3, complete sequence Length = 131133 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 aaaatatacaaaaatcaaga 371 |||||||||||||||||||| Sbjct: 128168 aaaatatacaaaaatcaaga 128149
>emb|BX088596.8| Zebrafish DNA sequence from clone CH211-285J6 in linkage group 14, complete sequence Length = 142350 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 tacaaaaatcaagagaagca 377 |||||||||||||||||||| Sbjct: 21545 tacaaaaatcaagagaagca 21564
>emb|CT025700.16| Mouse DNA sequence from clone RP24-151J17 on chromosome 17, complete sequence Length = 178486 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 aagtcagaagctaaaaatat 506 |||||||||||||||||||| Sbjct: 177881 aagtcagaagctaaaaatat 177862
>emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, complete sequence Length = 231581 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 aaaagcagtacctactgtac 413 |||||||||||||||||||| Sbjct: 197417 aaaagcagtacctactgtac 197436
>emb|AL590151.8| Zebrafish DNA sequence from clone RP71-46J2 in linkage group 14, complete sequence Length = 137129 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 tacaaaaatcaagagaagca 377 |||||||||||||||||||| Sbjct: 80046 tacaaaaatcaagagaagca 80065
>gb|AC147446.3| Gallus gallus BAC clone CH261-7A22 from chromosome unknown, complete sequence Length = 182128 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 gaacaaaattgcacaatagaataa 50 |||||| ||||||||||||||||| Sbjct: 125326 gaacaatattgcacaatagaataa 125303
>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14, complete sequence Length = 122704 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 aacaaaattgcacaatagaa 47 |||||||||||||||||||| Sbjct: 48017 aacaaaattgcacaatagaa 47998
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 aaaaactgctccctttttatcccc 307 |||||||||||||||||| ||||| Sbjct: 586007 aaaaactgctccctttttttcccc 585984
>emb|AL845483.4| Mouse DNA sequence from clone RP23-256M16 on chromosome 2, complete sequence Length = 184819 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 atatacaaaaatcaagagaa 374 |||||||||||||||||||| Sbjct: 54850 atatacaaaaatcaagagaa 54869
>emb|AL162632.4|CNS01RHX Human chromosome 14 DNA sequence BAC R-454K7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 161417 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caactaaaatatacaaaaat 366 |||||||||||||||||||| Sbjct: 55734 caactaaaatatacaaaaat 55753
>emb|AL672188.6| Mouse DNA sequence from clone RP23-53B2 on chromosome X, complete sequence Length = 150121 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 taaaatatacaaaaatcaag 370 |||||||||||||||||||| Sbjct: 61106 taaaatatacaaaaatcaag 61125 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,135,395 Number of Sequences: 3902068 Number of extensions: 6135395 Number of successful extensions: 149562 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149020 Number of HSP's gapped (non-prelim): 542 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
