>ref|NM_191682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1419

 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Minus

                                                                        
Query: 424  ctagtactgagccctctcatcgccgtcaaagttaagaccttcaatacctttcagagcaga 483
            |||||||||| |||||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct: 1419 ctagtactgaaccctctcatccccgtcaaaattaagaccttcaatacctttgagggcaga 1360

                                                                        
Query: 484  ctcgtagttcttcgggttagatgagtgccgggccgaagaggaacgctgtgcttctgcaga 543
            |||||| |||||   |||||||||||| ||||| ||||| ||| ||| || |||||| ||
Sbjct: 1359 ctcgtaattcttaacgttagatgagtgtcgggcagaagatgaatgctttggttctgccga 1300

                                                                        
Query: 544  atcaaccggtgggctcctctgaggacccgaggtcctacggaatgccccagggcttgcatc 603
            ||  || |||| |||  |||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 1299 attgactggtgagcttttctggggaccagaggttctccgaaatgccccagggcttgcatc 1240

               
Query: 604  agt 606
            |||
Sbjct: 1239 agt 1237

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Minus

                                                                            
Query: 424      ctagtactgagccctctcatcgccgtcaaagttaagaccttcaatacctttcagagcaga 483
                |||||||||| |||||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct: 29429280 ctagtactgaaccctctcatccccgtcaaaattaagaccttcaatacctttgagggcaga 29429221

                                                                            
Query: 484      ctcgtagttcttcgggttagatgagtgccgggccgaagaggaacgctgtgcttctgcaga 543
                |||||| |||||   |||||||||||| ||||| ||||| ||| ||| || |||||| ||
Sbjct: 29429220 ctcgtaattcttaacgttagatgagtgtcgggcagaagatgaatgctttggttctgccga 29429161

                                                                            
Query: 544      atcaaccggtgggctcctctgaggacccgaggtcctacggaatgccccagggcttgcatc 603
                ||  || |||| |||  |||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 29429160 attgactggtgagcttttctggggaccagaggttctccgaaatgccccagggcttgcatc 29429101

                   
Query: 604      agt 606
                |||
Sbjct: 29429100 agt 29429098



 Score =  109 bits (55), Expect = 1e-20
 Identities = 137/160 (85%), Gaps = 12/160 (7%)
 Strand = Plus / Minus

                                                                            
Query: 238      cctcgggctggccgcttatttaccgtgtccaggagaagaccatcatcatctggcagtagc 297
                |||| ||||| |||||||||||||||||||||   | ||||||||||   |||||  |||
Sbjct: 29429441 cctcaggctgaccgcttatttaccgtgtccag---aggaccatcatc---tggcaaaagc 29429388

                                                                            
Query: 298      actcctcacatcctcctcgtgacatctcctgtgatccaaaactcaacaggaaatgctgtg 357
                |||  ||||||||||||    |||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 29429387 act--tcacatcctccta---acatatcctgtgatacaaaactcaacaggagatgctgtg 29429333

                                                        
Query: 358      cttatctccagattatgattttatacagagcacatgtaga 397
                || |||| |||||||||||||| |||||||||||||||||
Sbjct: 29429332 ctcatctacagattatgatttt-tacagagcacatgtaga 29429294



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 164      gaattataaagacatttacagaacc 188
                |||| ||||||||||||||||||||
Sbjct: 29429499 gaataataaagacatttacagaacc 29429475

>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F09
          Length = 138277

 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Minus

                                                                          
Query: 424    ctagtactgagccctctcatcgccgtcaaagttaagaccttcaatacctttcagagcaga 483
              |||||||||| |||||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct: 124342 ctagtactgaaccctctcatccccgtcaaaattaagaccttcaatacctttgagggcaga 124283

                                                                          
Query: 484    ctcgtagttcttcgggttagatgagtgccgggccgaagaggaacgctgtgcttctgcaga 543
              |||||| |||||   |||||||||||| ||||| ||||| ||| ||| || |||||| ||
Sbjct: 124282 ctcgtaattcttaacgttagatgagtgtcgggcagaagatgaatgctttggttctgccga 124223

                                                                          
Query: 544    atcaaccggtgggctcctctgaggacccgaggtcctacggaatgccccagggcttgcatc 603
              ||  || |||| |||  |||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 124222 attgactggtgagcttttctggggaccagaggttctccgaaatgccccagggcttgcatc 124163

                 
Query: 604    agt 606
              |||
Sbjct: 124162 agt 124160



 Score =  109 bits (55), Expect = 1e-20
 Identities = 137/160 (85%), Gaps = 12/160 (7%)
 Strand = Plus / Minus

                                                                          
Query: 238    cctcgggctggccgcttatttaccgtgtccaggagaagaccatcatcatctggcagtagc 297
              |||| ||||| |||||||||||||||||||||   | ||||||||||   |||||  |||
Sbjct: 124503 cctcaggctgaccgcttatttaccgtgtccag---aggaccatcatc---tggcaaaagc 124450

                                                                          
Query: 298    actcctcacatcctcctcgtgacatctcctgtgatccaaaactcaacaggaaatgctgtg 357
              |||  ||||||||||||    |||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 124449 act--tcacatcctccta---acatatcctgtgatacaaaactcaacaggagatgctgtg 124395

                                                      
Query: 358    cttatctccagattatgattttatacagagcacatgtaga 397
              || |||| |||||||||||||| |||||||||||||||||
Sbjct: 124394 ctcatctacagattatgatttt-tacagagcacatgtaga 124356



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 164    gaattataaagacatttacagaacc 188
              |||| ||||||||||||||||||||
Sbjct: 124561 gaataataaagacatttacagaacc 124537

>gb|AY105545.1| Zea mays PCO081749 mRNA sequence
          Length = 1144

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 163/203 (80%)
 Strand = Plus / Minus

                                                                       
Query: 424 ctagtactgagccctctcatcgccgtcaaagttaagaccttcaatacctttcagagcaga 483
           |||||||||| ||||||| ||||| ||||| | |||||||||||| ||||| ||||||||
Sbjct: 663 ctagtactgaaccctctcgtcgccatcaaaatgaagaccttcaatgcctttgagagcaga 604

                                                                       
Query: 484 ctcgtagttcttcgggttagatgagtgccgggccgaagaggaacgctgtgcttctgcaga 543
            ||||||||||||  |||||| |  |||||| | || || || ||||    |||||| ||
Sbjct: 603 atcgtagttcttcacgttagacggatgccggcctgaggatgagcgcttctgttctgcgga 544

                                                                       
Query: 544 atcaaccggtgggctcctctgaggacccgaggtcctacggaatgccccagggcttgcatc 603
           ||  || |||| ||| ||||||||||| ||||  || ||||| ||||| |||||||| ||
Sbjct: 543 atggacaggtgagcttctctgaggacctgaggctctgcggaacgcccctgggcttgcgtc 484

                                  
Query: 604 agtcgtgcgtgatcgtgaaggct 626
            || |  |||| |||||||||||
Sbjct: 483 ggttgcacgtgctcgtgaaggct 461

>gb|AY110645.1| Zea mays CL20581_1 mRNA sequence
          Length = 503

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 424 ctagtactgagccctctcatcgccgtcaaagttaagaccttcaatacctttcagagcaga 483
           |||||||||| ||||||| ||||| || ||  |||| |||||||| ||||| ||||| ||
Sbjct: 102 ctagtactgaaccctctcgtcgccatctaaagtaaggccttcaatgcctttgagagcgga 43

                                  
Query: 484 ctcgtagttcttcgggttagatg 506
            |||||||||||||  |||||||
Sbjct: 42  atcgtagttcttcgcattagatg 20

>gb|BT019119.1| Zea mays clone Contig731.F mRNA sequence
          Length = 1034

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 481 agactcgtagttcttcgggttagatgagtg 510
           ||||||||||||||||||||||||||||||
Sbjct: 684 agactcgtagttcttcgggttagatgagtg 655

>gb|AY103921.1| Zea mays PCO126557 mRNA sequence
          Length = 1468

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 481 agactcgtagttcttcgggttagatgagtg 510
           ||||||||||||||| ||||||||||||||
Sbjct: 959 agactcgtagttcttggggttagatgagtg 930

>ref|XM_643963.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (348.t00007)
           partial mRNA
          Length = 972

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 120 aaggaatataaataatacaaca 141
           ||||||||||||||||||||||
Sbjct: 846 aaggaatataaataatacaaca 825

>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 187484

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    gaaggaatataaataatacaa 139
              |||||||||||||||||||||
Sbjct: 158416 gaaggaatataaataatacaa 158396

>emb|BX842644.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence;
              segment 3/4
          Length = 349402

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    aatataaataatacaacaaac 144
              |||||||||||||||||||||
Sbjct: 311945 aatataaataatacaacaaac 311925



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    aatataaataatacaacaaac 144
              |||||||||||||||||||||
Sbjct: 296772 aatataaataatacaacaaac 296752

>emb|AJ427420.1|CGI427420 Crassostrea gigas partial mRNA for bone morphogenic protein type 2
            receptor (BMP-R2 gene)
          Length = 4426

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 268  aggagaagaccatcatcatct 288
            |||||||||||||||||||||
Sbjct: 985  aggagaagaccatcatcatct 1005

>gb|AC016136.21| Homo sapiens 12 BAC RP11-1036M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176704

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 455    ttaagaccttcaatacctttc 475
              |||||||||||||||||||||
Sbjct: 154643 ttaagaccttcaatacctttc 154663

>emb|BX005047.5| Zebrafish DNA sequence from clone DKEY-38N1 in linkage group 1,
             complete sequence
          Length = 141396

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   tataaataatacaacaaactc 146
             |||||||||||||||||||||
Sbjct: 78434 tataaataatacaacaaactc 78454

>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   gaaggaatataaataatacaa 139
             |||||||||||||||||||||
Sbjct: 13113 gaaggaatataaataatacaa 13093

>gb|AC117239.4| Mus musculus BAC clone RP24-117K6 from chromosome 18, complete sequence
          Length = 150804

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    gaatataaataatacaacaa 142
              ||||||||||||||||||||
Sbjct: 136652 gaatataaataatacaacaa 136633

>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete
             sequence
          Length = 173949

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   gaatataaataatacaacaa 142
             ||||||||||||||||||||
Sbjct: 45506 gaatataaataatacaacaa 45487

>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence
          Length = 205784

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   aaggaatataaataatacaa 139
             ||||||||||||||||||||
Sbjct: 17266 aaggaatataaataatacaa 17247

>ref|XM_773885.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_480_68667_67975) partial mRNA
          Length = 693

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 575 gtcctacggaatgccccagg 594
           ||||||||||||||||||||
Sbjct: 306 gtcctacggaatgccccagg 325

>emb|AL672292.9| Human DNA sequence from clone XXyac-39EC11 on chromosome 6 Contains
             three CpG islands, complete sequence
          Length = 129361

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   taaagacatttacagaacca 189
             ||||||||||||||||||||
Sbjct: 99977 taaagacatttacagaacca 99958

>emb|AL137222.17| Human DNA sequence from clone RP1-209B5 on chromosome 6 Contains the 5'
             end of the AKAP7 gene for A kinase (PRKA) anchor protein
             7, a zinc finger pseudogene and a CpG island, complete
             sequence
          Length = 110724

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   ttataaagacatttacagaa 186
             ||||||||||||||||||||
Sbjct: 25255 ttataaagacatttacagaa 25236

>emb|AL022393.1|HSP373C6 Human DNA sequence from clone XX-P373C6 on chromosome 6p21.31-21.33
             Contains the gene for a novel C2H2 type zinc finger
             protein, the ZNF193 gene for zinc finger protein 193, a
             TOB1 or 2 (transducer of ERBB2, 1 or 2) pseudogene, the 3'
             end of a novel gene, two zinc finger protein pseudogenes
             and a CpG island, complete sequence
          Length = 85654

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   aaggaatataaataatacaa 139
             ||||||||||||||||||||
Sbjct: 13912 aaggaatataaataatacaa 13931

>dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds
          Length = 153079

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 tataaagacatttacagaac 187
           ||||||||||||||||||||
Sbjct: 753 tataaagacatttacagaac 734

>gb|AC015509.6| Homo sapiens chromosome 8, clone RP11-21M19, complete sequence
          Length = 152854

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 561   tctgaggacccgaggtccta 580
             ||||||||||||||||||||
Sbjct: 48055 tctgaggacccgaggtccta 48036

>gb|AC104136.5| Homo sapiens BAC clone RP11-782E2 from 4, complete sequence
          Length = 149715

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 462    cttcaatacctttcagagca 481
              ||||||||||||||||||||
Sbjct: 106614 cttcaatacctttcagagca 106595

>gb|AC097661.3| Homo sapiens BAC clone RP11-553E15 from 4, complete sequence
          Length = 169197

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   caagtgccacataatgaatt 168
             ||||||||||||||||||||
Sbjct: 54304 caagtgccacataatgaatt 54285

>gb|AC023424.7| Homo sapiens BAC clone RP11-555K12 from 4, complete sequence
          Length = 200147

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   taatgaattataaagacatt 179
             ||||||||||||||||||||
Sbjct: 47989 taatgaattataaagacatt 48008

>gb|AC068570.23| Homo sapiens chromosome 8, clone RP11-126N1, complete sequence
          Length = 148783

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 561    tctgaggacccgaggtccta 580
              ||||||||||||||||||||
Sbjct: 138020 tctgaggacccgaggtccta 138001

>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    gtcaaagttaagaccttcaa 467
              ||||||||||||||||||||
Sbjct: 694230 gtcaaagttaagaccttcaa 694249

>gb|AC007058.2|AC007058 Homo sapiens chromosome 14 clone containing intron for neurexin III,
             complete sequence
          Length = 95956

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aatataaataatacaacaaa 143
             ||||||||||||||||||||
Sbjct: 45001 aatataaataatacaacaaa 44982

>gb|AC112259.4| Mus musculus BAC clone RP23-179F7 from 12, complete sequence
          Length = 190525

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aaggaatataaataatacaa 139
              ||||||||||||||||||||
Sbjct: 103999 aaggaatataaataatacaa 103980

>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial
              variable region, strain 129/Sv
          Length = 1382053

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    gaattataaagacatttacagaac 187
              |||||||||||||||||| |||||
Sbjct: 295558 gaattataaagacatttaaagaac 295581



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    gaattataaagacatttacagaac 187
              |||||||||||||||||| |||||
Sbjct: 235372 gaattataaagacatttaaagaac 235395


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,333,337
Number of Sequences: 3902068
Number of extensions: 5333337
Number of successful extensions: 103341
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103239
Number of HSP's gapped (non-prelim): 100
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)