>FIMF_SALTY (P37926) Fimbrial-like protein fimF precursor|
          Length = 172

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 22/60 (36%), Positives = 32/60 (53%)
 Frame = +3

Query: 363 ARVSRSSSKAISLGTAPTERPAVTRQQPLEAASSSRATGWPCPPGRQRVSHARSVTPAPG 542
           A V+  S+K+++LGT PT++           A S +  G  CPPG   ++   S TPAPG
Sbjct: 42  AVVAGDSNKSVNLGTWPTKQLHAAGDATQPVAFSLKLEG--CPPGSASITF--SGTPAPG 97

>MAUG_METME (Q50233) Methylamine utilization protein mauG precursor|
          Length = 335

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
 Frame = +3

Query: 261 NTISGGDLQPRRRLARPEHSGGALHRPESSSHC--------DARVSRSSSKAISLGTAPT 416
           NT    +L PR +  RP+     L  P +            D R+SRS   A +   +P 
Sbjct: 17  NTAWSANLPPREKFKRPDSIPAPLSNPLTLEKATLGKTLFFDQRLSRSGGMACATCHSPD 76

Query: 417 ERPAVTRQQPLEAASSSRATGWP 485
           +R +  R  PL+A S S A   P
Sbjct: 77  QRWSDGRTLPLQAESVSNARRTP 99

>ACM5_HUMAN (P08912) Muscarinic acetylcholine receptor M5|
          Length = 532

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 69  VSQRQETKGF---PSHLETKRQRVTLVRRRNPDETTPAIHISVDLQHWSRY 212
           V++   TKG    PSH  TKR+RV LV+ R   +T  AI ++  +  W+ Y
Sbjct: 409 VAKEPSTKGLNPNPSHQMTKRKRVVLVKERKAAQTLSAILLAFIIT-WTPY 458

>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1305

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 270 SGGDLQPRRRLARPEHSGGALH-RPESSSHCDARVSRSSSKAISLGTAPTERPAVTRQQP 446
           SG  LQ   RL RP  S  A    P  +  C++  S SSS + S  ++ +E  A     P
Sbjct: 669 SGAGLQRLHRLRRPHSSSDAFPVGPAPAGSCESLSSSSSSSSSSSSSSSSESSA-GGLGP 727

Query: 447 LEAASSSRATGW 482
           L  + S R + W
Sbjct: 728 LSGSPSHRTSAW 739

>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1
           homolog) (hPrt1)
          Length = 814

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 276 GDLQPRRRLARPEHSGGALHRPESSSHCDARVSRSSSKAISLGTAPTERPAVTRQQPLEA 455
           G  QP    A P  + G L RP      +A  + +SS+ + +  A  E P V  +   EA
Sbjct: 20  GQQQPA---AEPPPAEGLL-RPAGPGAPEAAGTEASSEEVGIAEAGPE-PEVRTEPAAEA 74

Query: 456 ASSSRATGWPCPPGRQRV--SHARSVTPAPG 542
            ++S  +  P PP  + +  SHA    PA G
Sbjct: 75  EAASGPSESPSPPAAEELPGSHAEPPVPAQG 105

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
 Frame = +3

Query: 270 SGGDLQPRRRLARPEHSGGALHRPESSSHCDARVSRSSSKAISLGTAPTERPAVTRQQPL 449
           S  DL P R  + P     A  R  SSS   +  S SSS + S  +   E   V    PL
Sbjct: 354 SDSDLSPARSPSAPRAPAAAARRSASSSSSSS--SSSSSSSSSSSSEGEEDEGVRPGAPL 411

Query: 450 EAASSSRATGWPCPPGRQRVSHARS---VTPAPGVEKA 554
             A    +   P    R   S A S    +PAP  E A
Sbjct: 412 ARAGPPPSPPAPAAAPRPSASSASSSAAASPAPAPEPA 449

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 339  PESSSHCD-ARVSRSSSKAIS--LGTAPTERPAVTRQQPLEAASSSRATGWPCPPGRQRV 509
            PE +S     R +RSS K+    L TAP  +P+ +  QP+ A  +S+AT       R R 
Sbjct: 1469 PEPTSQATRGRTNRSSVKSPETVLRTAPELQPSTSTHQPVTAKHTSQAT-------RGRT 1521

Query: 510  SHARSVTPAPGVEKA 554
            + +   TP P V  A
Sbjct: 1522 NRSSVKTPEPVVSTA 1536



 Score = 29.6 bits (65), Expect = 7.8
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 309  PEHSGGALHRPESSSHCD-ARVSRSSSKAI--SLGTAPTERPAVTRQQPLEAASSSRATG 479
            P  S   L  PE +S     R +RSS K    ++ TAP   P  +  QP+    +SRAT 
Sbjct: 1664 PSTSRSQLVTPEPTSRATRGRKNRSSVKTPEPAVPTAPELHPTTSTDQPVTPKPTSRAT- 1722

Query: 480  WPCPPGRQRVSHARSVTPAP 539
                  R R + +   TP P
Sbjct: 1723 ------RGRTNRSSVKTPEP 1736

>ACM5_MACMU (P56490) Muscarinic acetylcholine receptor M5|
          Length = 532

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 69  VSQRQETKGF---PSHLETKRQRVTLVRRRNPDETTPAIHISVDLQHWSRY 212
           V++   TKG    PSH  TKR+R+ LV+ R   +T  AI ++  +  W+ Y
Sbjct: 409 VAKEPSTKGLNPNPSHQMTKRKRMVLVKERKAAQTLSAILLAFIIT-WTPY 458

>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B|
            subunit (Voltage-gated calcium channel alpha subunit
            Cav2.2) (DOE-4)
          Length = 2326

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 333  HRPESSSHCDARVSRSSSKAISLGTAPTERPAVTRQQPLEAASSSRATGWPCPPGRQRVS 512
            H  E +   DA++   SSK    G +   RP  + ++  +   S    G   PP  +   
Sbjct: 2066 HADEEAGQLDAQLRDQSSKERERGRSQERRPPSSAEK--QRYYSCDRYGSREPPQPRSTD 2123

Query: 513  HARSVTPAPGVEK 551
            H+RS +P+ G E+
Sbjct: 2124 HSRSASPSTGTEQ 2136

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 306  RPEHSGGALHRPESSSHCD-ARVSRSSSKAIS--LGTAPTERPAVTRQQPLEAASSSRAT 476
            +P  S   L  PE +S     R +RSS K     + TAP   P  +  QP+    +SRAT
Sbjct: 1661 QPSTSRNQLVTPEPTSRATRCRTNRSSVKTPEPVVPTAPEPHPTTSTDQPVTPKLTSRAT 1720

Query: 477  GWPCPPGRQRVSHARSVTPAP 539
                   R++ + +   TP P
Sbjct: 1721 -------RRKTNRSSVKTPKP 1734

>GATA_CAMJR (Q5HU43) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 453

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2   SRFYSNTFNTLVSESIFGPQGGGVTAARNQGLSLAS-GDKTAACDARPA 145
           S +Y  T N L  E + G   GG  AA   GL+LAS G  T     +PA
Sbjct: 112 SSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA 160

>CFAH_HUMAN (P08603) Complement factor H precursor (H factor 1)|
          Length = 1231

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 340 GRWRAPPECSGRARRRLGCKSPP 272
           G+W +PP+C G     L CKSPP
Sbjct: 918 GKWSSPPQCEG-----LPCKSPP 935

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 306  RPEHSGGALHRPESSSHCD-ARVSRSSSKAIS--LGTAPTERPAVTRQQPLEAASSSRAT 476
            +P  S   L  PE +S     R +RSS K     + TAP   P  +  QP+    +SRAT
Sbjct: 1579 QPSTSRNQLVTPEPTSRATRCRTNRSSVKTPEPVVPTAPEPHPTTSTDQPVTPKLTSRAT 1638

Query: 477  GWPCPPGRQRVSHARSVTPAP 539
                   R++ + +   TP P
Sbjct: 1639 -------RRKTNRSSVKTPKP 1652

>SAPS2_HUMAN (O75170) SAPS domain family member 2|
          Length = 927

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 351 SHCDARVSRSSSKAISLGTAPTERPAVTRQQPLEAASSSRATGWPCPPGRQRVSHAR-SV 527
           SH +   S+   KA S  +       VTR+ PL A+ SS + G     G Q+ + A  +V
Sbjct: 752 SHAEGSRSQGPEKAFSPASPCAWNVCVTRKAPLLASDSSSSGGSHSEDGDQKAASAMDAV 811

Query: 528 TPAPGVE 548
           +  PG E
Sbjct: 812 SRGPGRE 818

>DCBD2_MOUSE (Q91ZV3) Discoidin, CUB and LCCL domain-containing protein 2|
           precursor (Endothelial and smooth muscle cell-derived
           neuropilin-like protein)
          Length = 769

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 496 PGGQGHPVALDDDAA-SSGCCRVTAGRSVGAVPRLMAL 386
           PGG   P A    A  S+GCC +  GR+  + PRL+ L
Sbjct: 16  PGGPAAPAATGRAALPSAGCCPLPPGRNSSSRPRLLLL 53

>E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expressed protein 4.1)|
           (4.1G)
          Length = 988

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -3

Query: 216 IYIDSS---VEDRRRCGSPELFHLDSVAGRASHAAVLSPDARESPWFLAAVTPPPCGPKM 46
           IY+  S   +ED  +     L H  S++    +    +P+ R S W    VTP P  P+ 
Sbjct: 605 IYVRHSNLMLEDLDKAQEAILKHQASISELKRNFMASTPEPRPSEWEKRRVTPLPLQPQ- 663

Query: 45  LSDTSVLNVLE*KR 4
            S    LNV+E K+
Sbjct: 664 ASSHETLNVVEEKK 677

>UVRC_DESDG (Q313T1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 700

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = -2

Query: 478 PVALDDDAASSGCCRVTA-------GRSVGAVPRLMALDDDRLTRASQCDEDSGRWRAPP 320
           P    +++AS    R  A       G  V  +P   A D+  +T A++   +  R    P
Sbjct: 400 PPLCAEESASGSALRAVAEMLTELRGGPVRVLPPRNATDNQLVTMATENAREDARAEKRP 459

Query: 319 ECSGRARRRLGCKSPPLMV 263
           + +G    +LG  +PP+ +
Sbjct: 460 DVAGVIAAKLGMSAPPVRI 478

>GATA_RHOBA (Q7UT33) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 499

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
 Frame = -2

Query: 631 YSVVVLRRMKERLPLPPGG---GRFERGFAFSTPGAGVTDRAWETRCRPGGQGHPVALDD 461
           Y   V+ R+K    +  G      F  G +  T   GVT   W+T   PGG     A   
Sbjct: 100 YDATVVARLKSAGAIVVGKTNMDEFAMGASTETSAMGVTGNPWDTTKTPGGSSGGAAA-- 157

Query: 460 DAASSGCCRVTAGRSVG 410
            A ++G   ++ G   G
Sbjct: 158 -AVAAGAVPLSLGTDTG 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,414,753
Number of Sequences: 219361
Number of extensions: 2174099
Number of successful extensions: 7302
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 6694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7281
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)