ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37i15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000022.1| Microcebus murinus target 1 genomic scaffold 42 2.2
2gb|AC145439.4| Microcebus murinus clone CH257-441K3, complete se... 42 2.2
3ref|NM_192546.1| Oryza sativa (japonica cultivar-group), predic... 40 8.6
4emb|AJ557546.1|MLI557546 Melittangium lichenicola melithiazol ge... 40 8.6
5gb|AE006470.1| Chlorobium tepidum TLS, complete genome 40 8.6
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
8dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
9dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6

>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    aataagatatgaacaccatta 270
              |||||||||||||||||||||
Sbjct: 554222 aataagatatgaacaccatta 554202



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>gb|AC145439.4| Microcebus murinus clone CH257-441K3, complete sequence
          Length = 215533

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    aataagatatgaacaccatta 270
              |||||||||||||||||||||
Sbjct: 196263 aataagatatgaacaccatta 196243



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>ref|NM_192546.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3243

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 301  tagcgcgcccggagca-ctccggcggcg 327
            |||||||||||||||| |||||||||||
Sbjct: 2954 tagcgcgcccggagcacctccggcggcg 2927



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>emb|AJ557546.1|MLI557546 Melittangium lichenicola melithiazol gene cluster
          Length = 51855

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   ggcgacgcctagcgcgcccg 311
             ||||||||||||||||||||
Sbjct: 30876 ggcgacgcctagcgcgcccg 30895



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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 553     cgaagccacgctcgaagcga 572
               ||||||||||||||||||||
Sbjct: 1165610 cgaagccacgctcgaagcga 1165629



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 61      gggaggcggtgtcacagcgg 80
               ||||||||||||||||||||
Sbjct: 7434768 gggaggcggtgtcacagcgg 7434787



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                            
Query: 301      tagcgcgcccggagca-ctccggcggcg 327
                |||||||||||||||| |||||||||||
Sbjct: 22864946 tagcgcgcccggagcacctccggcggcg 22864973



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>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0700A11
          Length = 136321

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 301   tagcgcgcccggagca-ctccggcggcg 327
             |||||||||||||||| |||||||||||
Sbjct: 68503 tagcgcgcccggagcacctccggcggcg 68530



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>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0001B11
          Length = 166004

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     gggaggcggtgtcacagcgg 80
              ||||||||||||||||||||
Sbjct: 141353 gggaggcggtgtcacagcgg 141372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,418,105
Number of Sequences: 3902068
Number of extensions: 3418105
Number of successful extensions: 52439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 52354
Number of HSP's gapped (non-prelim): 90
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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