ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8h18 |
|---|---|
| Clone Library Name | barley_pub |
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 32.7 bits (73), Expect = 0.41 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Frame = +2 Query: 101 GAGSPQAPRPGVLRTQPE*GRLPSHPGKQRSG---EAGGNQRCA*RKADALHDPCGS*AR 271 G+G +PR G QP G +PS S AG +QR PC S + Sbjct: 476 GSGRQSSPRMG----QPGPGSMPSRAASHTSDFNPNAGSDQRVV-NGGVPWPSPCPSHSS 530 Query: 272 SPAEEFHGFPPEIPSRAGPGDRRS*RAPGR 361 P + P +P RA R R P R Sbjct: 531 RPPSRYQSGPNSLPPRAATHTRPPSRPPSR 560
>RP28_BACTK (P62181) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 31.6 bits (70), Expect = 0.91 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 123 LGLVSYARSQSRDVCLHIQESSDLEKQVEIRDALDERQ 236 + L+ +S+S DV IQ S +LEK E D LDER+ Sbjct: 142 ISLIDILKSESEDVIDMIQLSMELEKIKEYIDILDERE 179
>RP28_BACCR (P62180) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 31.6 bits (70), Expect = 0.91 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 123 LGLVSYARSQSRDVCLHIQESSDLEKQVEIRDALDERQ 236 + L+ +S+S DV IQ S +LEK E D LDER+ Sbjct: 142 ISLIDILKSESEDVIDMIQLSMELEKIKEYIDILDERE 179
>RP28_BACAN (P62182) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 31.6 bits (70), Expect = 0.91 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 123 LGLVSYARSQSRDVCLHIQESSDLEKQVEIRDALDERQ 236 + L+ +S+S DV IQ S +LEK E D LDER+ Sbjct: 142 ISLIDILKSESEDVIDMIQLSMELEKIKEYIDILDERE 179
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 31.6 bits (70), Expect = 0.91 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +2 Query: 92 RR*GAGSPQAPRPGVLRTQPE*GRLPSHPGKQRSGEAGGNQ 214 RR G P++ RPG L P +LP +PG+Q S G +Q Sbjct: 411 RRKGKDQPESRRPGSLPAPPP-SQLPRNPGEQASNTNGTHQ 450
>PYGO2_HUMAN (Q9BRQ0) Pygopus homolog 2| Length = 406 Score = 31.6 bits (70), Expect = 0.91 Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -1 Query: 330 PGPALDGISGGKPWNSSAGER-AQEPHGSCKASAFRQAHL*FPPASPDR 187 PGP G GGKP N A QEPH A+A FPP S R Sbjct: 252 PGPG--GEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGR 298
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 30.8 bits (68), Expect = 1.6 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Frame = +2 Query: 101 GAGSPQAPRPGVLRTQPE*GRLPSHPGKQRSG---EAGGNQRCA*RKADALHDPCGS*AR 271 G+G +PR G QP G +PS S +G +QR PC S + Sbjct: 506 GSGRQNSPRMG----QPGSGSMPSRSTSHTSDFNPNSGSDQRVV-NGGVPWPSPCPSPSS 560 Query: 272 SPAEEFHGFPPEIPSRAGPGDRRS*RAPGR 361 P + P +P RA R R P R Sbjct: 561 RPPSRYQSGPNSLPPRAATPTRPPSRPPSR 590
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = +2 Query: 86 PRRR*GAGSPQAPRPGVLRTQPE*GRLPSHPGKQRSGEAGGNQR 217 PR G + PRPG P G P PG RS GGN R Sbjct: 194 PRPGGAVGGARPPRPGA----PRPGGRPGAPGAGRSDAGGGNYR 233
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = +2 Query: 86 PRRR*GAGSPQAPRPGVLRTQPE*GRLPSHPGKQRSGEAGGNQR 217 PR G + PRPG P G P PG RS GGN R Sbjct: 194 PRPGGAVGGARPPRPGA----PRPGGRPGAPGAGRSDAGGGNYR 233
>ANXA3_RAT (P14669) Annexin A3 (Annexin III) (Lipocortin III) (Placental| anticoagulant protein III) (PAP-III) (35-alpha calcimedin) Length = 323 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +3 Query: 249 IHVAPERARRQRNSTVFHRKSRRERAL---VIGDLDGHQEEVIVHL 377 I++ ER+ QR V H + E+AL + GDL GH E V+V L Sbjct: 42 INILTERSNAQRQLIVKHIQEAYEQALKADLKGDLSGHFEHVMVAL 87
>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2| Length = 913 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2 Query: 104 AGSPQAPRPGVLRTQPE*GRLPSHPGKQRSGEAGGNQRCA*R-KADALHD 250 A PQAP+P + + + R S +QRSG + QR A R + + LHD Sbjct: 76 AARPQAPQPRIHQPGGQQQRPGSSQSQQRSGSSAPQQRQADRPRGNVLHD 125
>MOXY_PARDE (P29905) Methanol utilization control sensor protein moxY (EC| 2.7.3.-) Length = 446 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 168 GRRPYSGCVRRTPGRGA*GLPAPHRRLGRSNINQWR 61 G+ P SG R TPG G G+ R LG + + WR Sbjct: 393 GKGPQSGTGRPTPGFGQIGIEDRARALGATYLPPWR 428
>AT10A_HUMAN (O60312) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)| (ATPVA) (Aminophospholipid translocase VA) Length = 1499 Score = 29.3 bits (64), Expect = 4.5 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Frame = +1 Query: 52 SKPSPLVYV*PAKASMRSR*PSGTSAWCPTHAARVG-----TSAFTSRKAAI--WRSRWK 210 S P+P+ P +A +RS P G AA G +S F+ ++ W S W Sbjct: 1389 SAPAPMSSA-PGEAVLRS--PGGCPEESKVRAASTGRVTPLSSLFSLPTFSLLNWISSWS 1445 Query: 211 SEMRLTKGRCFARSMWLLSALAGRGIP 291 RL F+R+ L AGRG+P Sbjct: 1446 LVSRLGSVLQFSRTEQLADGQAGRGLP 1472
>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois| homeobox protein 1) (Homeodomain protein IRXA1) Length = 480 Score = 29.3 bits (64), Expect = 4.5 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Frame = -1 Query: 339 LRSPGPALDGISG---GKPWNSSAGERAQEPHGSCKASAFRQAHL*FPPASPDRCFPGCE 169 L SPG A G+ G GKP S E A P G+ KAS PP P PG Sbjct: 296 LLSPGAAAGGLQGAPHGKPKIWSLAETATSPDGAPKAS---------PP--PPAGHPGAH 344 Query: 168 GRRPYSGCVRRTP 130 G P +G + P Sbjct: 345 G--PSAGAPLQHP 355
>SCW_DROME (P54631) Protein screw precursor| Length = 400 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +2 Query: 29 NGTVFLVSVNPLHWFMFDLPRRR*GAGSPQAPRP 130 NG LV + L F DL +RR G GSP P P Sbjct: 256 NGPELLVKIQKLR-FKRDLEKRRAGGGSPPPPPP 288
>YL8J_SCHPO (Q9UTA1) Hypothetical zinc finger protein C25B8.19c in chromosome I| Length = 522 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -2 Query: 338 SDHQGPLSTGFPVENRGIPLPASALRSH-MDRAKHLPFVKRISDFHLLLQIAAFL 177 +D QGP +T +PV +PLP A +H + R ++P + + L + A L Sbjct: 359 NDSQGPANTSYPV---SVPLPNDAENNHTLSRNPYIPSLNFKDNMSAELSVVATL 410
>YPO4_CAEEL (P53015) Hypothetical protein F31E3.4| Length = 1131 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +3 Query: 75 CLTCQGVDEEPVALRHLGLVSYARSQSRDVCLHIQES---SDLEKQVEIRDALDERQMLC 245 C+ C+G+ ++ HL ++YA +C I++S D ++E D +M C Sbjct: 605 CIRCRGLQQQESVTDHLLKLNYAPVYQASLCQLIEKSLHIGDDSGEIECEDCKQMSRMEC 664
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = +2 Query: 245 HDPCGS*ARSPAEEFHGFPPEIPSRAGPGDRRS*RAPG 358 HDPCG P E PP +P GP + ++ G Sbjct: 2205 HDPCGPNPLEPGEIREYVPPPVPLPPGPSTHLAEQSTG 2242
>PITM3_MOUSE (Q3UHE1) Membrane-associated phosphatidylinositol transfer protein| 3 (Phosphatidylinositol transfer protein, membrane-associated 3) (Pyk2 N-terminal domain-interacting receptor 1) (NIR-1) Length = 974 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = +3 Query: 183 SSDLEKQVEIRDALDERQ----MLCTIHVAPERARRQRNSTVFHRKSRRERALVIGDLDG 350 S+DL +Q+E LDERQ CT + E+ R ++ RR+R G ++ Sbjct: 58 SNDLVEQIETIGKLDERQGDGATACTSSILQEKQRE-----LYRVSLRRQRFPAQGSIEI 112 Query: 351 HQE 359 H++ Sbjct: 113 HED 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,957,087 Number of Sequences: 219361 Number of extensions: 1647386 Number of successful extensions: 5068 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4831 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5061 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
