ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37i04 |
|---|---|
| Clone Library Name | barley_pub |
>S3AD_ECOLI (P0AG05) Streptomycin 3''-adenylyltransferase (EC 2.7.7.47)| Length = 263 Score = 32.7 bits (73), Expect = 0.53 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 18/77 (23%) Frame = -1 Query: 365 HCHGRLVDWQVKHHSKMGTMLVLAVAHRTAVRR------------------MELVVVTKI 240 H +G VD +K HS + ++ + V RR + V VT + Sbjct: 32 HLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIV 91 Query: 239 EHKSVISWRFPCRRCVQ 189 H +I WR+P +R +Q Sbjct: 92 VHDDIIPWRYPAKRELQ 108
>S3AX_SHIFL (P0AG06) Streptomycin 3''-adenylyltransferase (EC 2.7.7.47)| Length = 262 Score = 32.7 bits (73), Expect = 0.53 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 18/77 (23%) Frame = -1 Query: 365 HCHGRLVDWQVKHHSKMGTMLVLAVAHRTAVRR------------------MELVVVTKI 240 H +G VD +K HS + ++ + V RR + V VT + Sbjct: 32 HLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIV 91 Query: 239 EHKSVISWRFPCRRCVQ 189 H +I WR+P +R +Q Sbjct: 92 VHDDIIPWRYPAKRELQ 108
>S3AD_KLEPN (P08881) Streptomycin 3''-adenylyltransferase (EC 2.7.7.47)| Length = 262 Score = 32.7 bits (73), Expect = 0.53 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 18/77 (23%) Frame = -1 Query: 365 HCHGRLVDWQVKHHSKMGTMLVLAVAHRTAVRR------------------MELVVVTKI 240 H +G VD +K HS + ++ + V RR + V VT + Sbjct: 32 HLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIV 91 Query: 239 EHKSVISWRFPCRRCVQ 189 H +I WR+P +R +Q Sbjct: 92 VHDDIIPWRYPAKRELQ 108
>GALU_MYCPN (P75124) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (Alpha-D-glucosyl-1-phosphate uridylyltransferase) (Uridine diphosphoglucose pyrophosphorylase) Length = 291 Score = 31.2 bits (69), Expect = 1.5 Identities = 10/34 (29%), Positives = 22/34 (64%) Frame = -1 Query: 194 VQRSTMLMRHRELYYRQLKDQRNLQHVYLVEQNN 93 + + +L +H++ ++++KD NL H+Y V Q + Sbjct: 73 ILENALLQKHKDQEHQEIKDIANLAHIYFVRQKH 106
>YN51_YEAST (P42843) Hypothetical 88.9 kDa protein in RFA2-STB1 intergenic| region Length = 763 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/62 (25%), Positives = 31/62 (50%) Frame = -1 Query: 293 VAHRTAVRRMELVVVTKIEHKSVISWRFPCRRCVQRSTMLMRHRELYYRQLKDQRNLQHV 114 + + AV + V+ + + W RRC++ S + +++R + YR L + LQ+V Sbjct: 619 IPNANAVPNLSTVMSPESDIHHTYYWNNSVRRCLRDSLIKLKNRTIEYRDLDVEEFLQNV 678 Query: 113 YL 108 L Sbjct: 679 TL 680
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 29.3 bits (64), Expect = 5.8 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +2 Query: 254 PPAPSCEPLSCELLP-APALFPSCCGV*PANPPNGH 358 PPAP+ P + + P AP + P GV P PP H Sbjct: 392 PPAPAVHPQAPGVHPPAPGIHPQAPGVHPQPPPGVH 427
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 248 LLPPAPSCEPLSC-ELLPAPALFPSCCGV*PANPPNGHG 361 ++PPA S C E+ P + P+ C V A PP+G+G Sbjct: 204 VVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSGNG 242
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 248 LLPPAPSCEPLSC-ELLPAPALFPSCCGV*PANPPNGHG 361 ++PPA S C E+ P + P+ C V A PP+G+G Sbjct: 204 VVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSGNG 242
>DDL_OCEIH (Q8ERJ6) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 366 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -1 Query: 173 MRHRELYYRQLKDQRNLQHVYLVEQNNVGFSCGCRCLLGRVHKAQRLPGRKL 18 + + E +Y +KD H LVE+ VG C +LG A +PG L Sbjct: 197 VENEEQFYSAIKDAFQFDHKLLVEEAIVGREIEC-AVLGNEKPAASVPGEIL 247
>MYC_AVIMH (P0C0N9) Viral myc transforming protein (v-Myc)| Length = 412 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +2 Query: 248 LLPPAPSCEPLS-CELLPAPALFPSC 322 L PPAPS + ELLPAP L PSC Sbjct: 43 LQPPAPSEDIWKKFELLPAPPLSPSC 68
>MYC_AVIME (P0C0N8) Viral myc transforming protein (v-Myc)| Length = 412 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +2 Query: 248 LLPPAPSCEPLS-CELLPAPALFPSC 322 L PPAPS + ELLPAP L PSC Sbjct: 43 LQPPAPSEDIWKKFELLPAPPLSPSC 68
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 28.5 bits (62), Expect = 9.9 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +2 Query: 248 LLPPAPSCEPLSC-ELLPAPALFPSCCGV*PANPPNGHG 361 ++PPA S C E+ P + P+ C V A PP+G+G Sbjct: 204 VVPPAYSSVNYYCNEIDPGAEVVPNECSVCEATPPSGNG 242 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,023,071 Number of Sequences: 219361 Number of extensions: 1365338 Number of successful extensions: 3712 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3704 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
