ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37g04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061689.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B09, full insert sequence Length = 1525 Score = 571 bits (288), Expect = e-159 Identities = 425/470 (90%), Gaps = 3/470 (0%) Strand = Plus / Minus Query: 277 caccttcgcagacgtccccgcggcacaacgggcaaaccctgtgtatttctttaagccact 336 |||||||||| |||||||| |||||||||||||| |||||||||| |||||| ||||||| Sbjct: 1196 caccttcgcacacgtccccacggcacaacgggcagaccctgtgtacttctttgagccact 1137 Query: 337 tgtcaacacactgcaggtgaaactcgtgtttgcacggaagacttcttatctgatctccat 396 ||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 1136 tgtcaacacacagcaagtgaaactcgtgtttgcacgggaggcttcttatctgatctccat 1077 Query: 397 cctcgtattcagttaagcagatatggcactgttccatatcagcactgcattgggctgtct 456 |||| ||||||||||||||||| || ||||||||||| ||| |||||||||||||||||| Sbjct: 1076 cctcatattcagttaagcagatgtgacactgttccatgtcatcactgcattgggctgtct 1017 Query: 457 caagctttttgtagctcttacatggtaatgaattaaccacagactctggagcttgagcag 516 |||||||||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct: 1016 ---gctttttgtagctcttacatggtaatgaattaaccacagattctggagcctgggcag 960 Query: 517 aggccatggaaagtgaaagtgacgagggttgccgatgaatctcatccaatacctcaaata 576 || |||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||| Sbjct: 959 agaccatggaaagcgaaagtgatgcaggttgccggtgaatttcatccaatacctcaaata 900 Query: 577 atgcctctgttaacatgacaattcttgatatacttgcacgagcactagattcttcagcga 636 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct: 899 atgcctcggttaacatgacaattcttgatatacttgcacgggcactagattcttcagcaa 840 Query: 637 ccaagaatgcatcacaggtgcatctgccaatttggtgtatccccaaaggacaagcagcag 696 |||||| | ||||||||||||||||||||||||||| |||||||||||||||||| | | Sbjct: 839 tcaagaaggaatcacaggtgcatctgccaatttggtggatccccaaaggacaagcaacgg 780 Query: 697 tactttgcccgttcccactatcaaaaatagcacgacggtgctccctaatc 746 ||||||| | | || |||||||||| |||||| || |||||||||||| Sbjct: 779 tactttggtcagtaccgctatcaaaaacagcacgccgatgctccctaatc 730
>gb|AY105180.1| Zea mays PCO105283 mRNA sequence Length = 746 Score = 283 bits (143), Expect = 4e-73 Identities = 257/295 (87%) Strand = Plus / Minus Query: 280 cttcgcagacgtccccgcggcacaacgggcaaaccctgtgtatttctttaagccacttgt 339 ||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| |||| Sbjct: 544 cttcgcagacgtctccgcggcacagagggcacaccctgtgtatttctttcagccatttgt 485 Query: 340 caacacactgcaggtgaaactcgtgtttgcacggaagacttcttatctgatctccatcct 399 ||||||| |||||||| |||||||| ||||| |||||| ||| |||||| |||||||||| Sbjct: 484 caacacattgcaggtggaactcgtgcttgcaaggaagaattcgtatctggtctccatcct 425 Query: 400 cgtattcagttaagcagatatggcactgttccatatcagcactgcattgggctgtctcaa 459 | |||||||||| ||||||||||||||||||||||||| |||||| ||||| || ||| | Sbjct: 424 catattcagttaggcagatatggcactgttccatatcatcactgcgttggggtgcctcta 365 Query: 460 gctttttgtagctcttacatggtaatgaattaaccacagactctggagcttgagcagagg 519 |||||||||||||||| || || || |||| ||| ||||| || ||||| ||| ||||| Sbjct: 364 gctttttgtagctcttgcacggcaacgaatcaactacagattcaggagcctgaacagaga 305 Query: 520 ccatggaaagtgaaagtgacgagggttgccgatgaatctcatccaatacctcaaa 574 ||||||||||||||||||| | ||||| || ||||| |||||||| |||||||| Sbjct: 304 ccatggaaagtgaaagtgatgcaggttgacggtgaatttcatccaacacctcaaa 250
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 214 bits (108), Expect = 3e-52 Identities = 162/180 (90%) Strand = Plus / Plus Query: 567 acctcaaataatgcctctgttaacatgacaattcttgatatacttgcacgagcactagat 626 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 34012952 acctcaaataatgcctcggttaacatgacaattcttgatatacttgcacgggcactagat 34013011 Query: 627 tcttcagcgaccaagaatgcatcacaggtgcatctgccaatttggtgtatccccaaagga 686 |||||||| | |||||| | ||||||||||||||||||||||||||| |||||||||||| Sbjct: 34013012 tcttcagcaatcaagaaggaatcacaggtgcatctgccaatttggtggatccccaaagga 34013071 Query: 687 caagcagcagtactttgcccgttcccactatcaaaaatagcacgacggtgctccctaatc 746 |||||| | |||||||| | | || |||||||||| |||||| || |||||||||||| Sbjct: 34013072 caagcaacggtactttggtcagtaccgctatcaaaaacagcacgccgatgctccctaatc 34013131 Score = 170 bits (86), Expect = 4e-39 Identities = 133/148 (89%), Gaps = 3/148 (2%) Strand = Plus / Plus Query: 423 cactgttccatatcagcactgcattgggctgtctcaagctttttgtagctcttacatggt 482 ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 34012059 cactgttccatgtcatcactgcattgggctgtct---gctttttgtagctcttacatggt 34012115 Query: 483 aatgaattaaccacagactctggagcttgagcagaggccatggaaagtgaaagtgacgag 542 ||||||||||||||||| |||||||| || |||||| |||||||||| |||||||| | Sbjct: 34012116 aatgaattaaccacagattctggagcctgggcagagaccatggaaagcgaaagtgatgca 34012175 Query: 543 ggttgccgatgaatctcatccaatacct 570 |||||||| ||||| ||||||||||||| Sbjct: 34012176 ggttgccggtgaatttcatccaatacct 34012203 Score = 167 bits (84), Expect = 7e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 423 cactgttccatatcagcactgcattgggctgtctcaagctttttgtagctcttacatggt 482 ||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 20472942 cactgttccatgttatcactgcattgggctgtct---gctttttgtagctcttacatggt 20472886 Query: 483 aatgaattaaccacagactctggagcttgagcagaggccatggaaagtgaaagtgacgag 542 |||||||||||||| || |||||||| || |||||| ||||||||||||||||||| | Sbjct: 20472885 aatgaattaaccacggattctggagcctgggcagagaccatggaaagtgaaagtgatgca 20472826 Query: 543 ggttgccgatgaatctcatccaatac 568 |||||||||||||| ||||||||||| Sbjct: 20472825 ggttgccgatgaatttcatccaatac 20472800 Score = 153 bits (77), Expect = 1e-33 Identities = 98/105 (93%) Strand = Plus / Plus Query: 314 cctgtgtatttctttaagccacttgtcaacacactgcaggtgaaactcgtgtttgcacgg 373 |||||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 34010835 cctgtgtacttctttgagccacttgtcaacacacagcaagtgaaactcgtgtttgcacgg 34010894 Query: 374 aagacttcttatctgatctccatcctcgtattcagttaagcagat 418 || ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 34010895 gaggcttcttatctgatctccatcctcatattcagttaagcagat 34010939 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 277 caccttcgcagacgtccccgcggcacaacgggcaaaccctg 317 |||||||||| |||||||| |||||||||||||| |||||| Sbjct: 34009906 caccttcgcacacgtccccacggcacaacgggcagaccctg 34009946
>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_D07 Length = 110585 Score = 214 bits (108), Expect = 3e-52 Identities = 162/180 (90%) Strand = Plus / Plus Query: 567 acctcaaataatgcctctgttaacatgacaattcttgatatacttgcacgagcactagat 626 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 40227 acctcaaataatgcctcggttaacatgacaattcttgatatacttgcacgggcactagat 40286 Query: 627 tcttcagcgaccaagaatgcatcacaggtgcatctgccaatttggtgtatccccaaagga 686 |||||||| | |||||| | ||||||||||||||||||||||||||| |||||||||||| Sbjct: 40287 tcttcagcaatcaagaaggaatcacaggtgcatctgccaatttggtggatccccaaagga 40346 Query: 687 caagcagcagtactttgcccgttcccactatcaaaaatagcacgacggtgctccctaatc 746 |||||| | |||||||| | | || |||||||||| |||||| || |||||||||||| Sbjct: 40347 caagcaacggtactttggtcagtaccgctatcaaaaacagcacgccgatgctccctaatc 40406 Score = 170 bits (86), Expect = 4e-39 Identities = 133/148 (89%), Gaps = 3/148 (2%) Strand = Plus / Plus Query: 423 cactgttccatatcagcactgcattgggctgtctcaagctttttgtagctcttacatggt 482 ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 39334 cactgttccatgtcatcactgcattgggctgtct---gctttttgtagctcttacatggt 39390 Query: 483 aatgaattaaccacagactctggagcttgagcagaggccatggaaagtgaaagtgacgag 542 ||||||||||||||||| |||||||| || |||||| |||||||||| |||||||| | Sbjct: 39391 aatgaattaaccacagattctggagcctgggcagagaccatggaaagcgaaagtgatgca 39450 Query: 543 ggttgccgatgaatctcatccaatacct 570 |||||||| ||||| ||||||||||||| Sbjct: 39451 ggttgccggtgaatttcatccaatacct 39478 Score = 153 bits (77), Expect = 1e-33 Identities = 98/105 (93%) Strand = Plus / Plus Query: 314 cctgtgtatttctttaagccacttgtcaacacactgcaggtgaaactcgtgtttgcacgg 373 |||||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 38110 cctgtgtacttctttgagccacttgtcaacacacagcaagtgaaactcgtgtttgcacgg 38169 Query: 374 aagacttcttatctgatctccatcctcgtattcagttaagcagat 418 || ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 38170 gaggcttcttatctgatctccatcctcatattcagttaagcagat 38214 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 277 caccttcgcagacgtccccgcggcacaacgggcaaaccctg 317 |||||||||| |||||||| |||||||||||||| |||||| Sbjct: 37181 caccttcgcacacgtccccacggcacaacgggcagaccctg 37221
>dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13 Length = 157088 Score = 167 bits (84), Expect = 7e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 423 cactgttccatatcagcactgcattgggctgtctcaagctttttgtagctcttacatggt 482 ||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 115366 cactgttccatgttatcactgcattgggctgtct---gctttttgtagctcttacatggt 115310 Query: 483 aatgaattaaccacagactctggagcttgagcagaggccatggaaagtgaaagtgacgag 542 |||||||||||||| || |||||||| || |||||| ||||||||||||||||||| | Sbjct: 115309 aatgaattaaccacggattctggagcctgggcagagaccatggaaagtgaaagtgatgca 115250 Query: 543 ggttgccgatgaatctcatccaatac 568 |||||||||||||| ||||||||||| Sbjct: 115249 ggttgccgatgaatttcatccaatac 115224
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 143 bits (72), Expect = 1e-30 Identities = 128/146 (87%), Gaps = 3/146 (2%) Strand = Plus / Plus Query: 423 cactgttccatatcagcactgcattgggctgtctcaagctttttgtagctcttacatggt 482 ||||||| ||| ||| ||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 16737858 cactgttacatgtcatcactgtattgggctgtct---gctttttgtagctcttacatggt 16737914 Query: 483 aatgaattaaccacagactctggagcttgagcagaggccatggaaagtgaaagtgacgag 542 |||||||||||||| || |||||||| || |||||| | ||||||||||||||||| | Sbjct: 16737915 aatgaattaaccacggattctggagcctgggcagagacaatggaaagtgaaagtgatgca 16737974 Query: 543 ggttgccgatgaatctcatccaatac 568 |||||||| ||||| ||||||||||| Sbjct: 16737975 ggttgccggtgaatttcatccaatac 16738000
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0047B10 Length = 158798 Score = 143 bits (72), Expect = 1e-30 Identities = 128/146 (87%), Gaps = 3/146 (2%) Strand = Plus / Plus Query: 423 cactgttccatatcagcactgcattgggctgtctcaagctttttgtagctcttacatggt 482 ||||||| ||| ||| ||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 86552 cactgttacatgtcatcactgtattgggctgtct---gctttttgtagctcttacatggt 86608 Query: 483 aatgaattaaccacagactctggagcttgagcagaggccatggaaagtgaaagtgacgag 542 |||||||||||||| || |||||||| || |||||| | ||||||||||||||||| | Sbjct: 86609 aatgaattaaccacggattctggagcctgggcagagacaatggaaagtgaaagtgatgca 86668 Query: 543 ggttgccgatgaatctcatccaatac 568 |||||||| ||||| ||||||||||| Sbjct: 86669 ggttgccggtgaatttcatccaatac 86694
>gb|AY111026.1| Zea mays CL11898_1 mRNA sequence Length = 705 Score = 48.1 bits (24), Expect = 0.042 Identities = 48/56 (85%) Strand = Plus / Plus Query: 552 tgaatctcatccaatacctcaaataatgcctctgttaacatgacaattcttgatat 607 ||||| ||||||| |||||||||| ||| |||| |||||| ||||||||||||| Sbjct: 512 tgaatttcatccagaacctcaaatagtgcttctgctaacataccaattcttgatat 567
>emb|CT025584.18| Mouse DNA sequence from clone RP23-78N7 on chromosome 16, complete sequence Length = 209542 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 515 agaggccatggaaagtgaaagtg 537 ||||||||||||||||||||||| Sbjct: 28516 agaggccatggaaagtgaaagtg 28494
>gb|AC170887.2| Mus musculus BAC clone RP24-67J21 from chromosome 16, complete sequence Length = 137231 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 515 agaggccatggaaagtgaaagtg 537 ||||||||||||||||||||||| Sbjct: 76945 agaggccatggaaagtgaaagtg 76967
>ref|XM_475181.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1650 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 555 atctcatccaatacctcaaataatgcctctgttaacatgacaattcttgatat 607 |||||||||| |||||||| | ||| |||| |||||| || ||||||||||| Sbjct: 1331 atctcatccagaacctcaaaaagtgcttctgctaacataacgattcttgatat 1279
>gb|AC122812.4| Mus musculus BAC clone RP23-285M9 from 1, complete sequence Length = 208430 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 503 tggagcttgagcagaggccatggaa 527 ||||||| ||||||||||||||||| Sbjct: 172734 tggagctggagcagaggccatggaa 172758
>gb|AC098737.3| Mus musculus BAC clone RP23-122D16 from 1, complete sequence Length = 212615 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 503 tggagcttgagcagaggccatggaa 527 ||||||| ||||||||||||||||| Sbjct: 153496 tggagctggagcagaggccatggaa 153472
>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the TAF13 gene for TAF13 RNA polymerase II TATA box binding protein (TBP)-associated factor 18kDa, a RAN member RAS oncogene family (RAN) pseudogene, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of a novel gene (KIAA0893) and three CpG islands, complete sequence Length = 107685 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 atggcactgttccatatcagcactg 443 |||||| |||||||||||||||||| Sbjct: 88670 atggcagtgttccatatcagcactg 88694
>emb|AJ719698.1| Gallus gallus mRNA for hypothetical protein, clone 5g6 Length = 3216 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 gagcagaggccatggaaagtg 531 ||||||||||||||||||||| Sbjct: 1246 gagcagaggccatggaaagtg 1266
>ref|NM_001007834.1| Gallus gallus synaptogyrin 3 (SYNGR3), mRNA Length = 3216 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 gagcagaggccatggaaagtg 531 ||||||||||||||||||||| Sbjct: 1246 gagcagaggccatggaaagtg 1266
>emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete sequence Length = 202920 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 315 ctgtgtatttctttaagccacttgtcaac 343 |||| ||||||||| |||||||||||||| Sbjct: 151289 ctgtttatttctttcagccacttgtcaac 151261
>dbj|AK101529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047I01, full insert sequence Length = 2235 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 555 atctcatccaatacctcaaataatgcctctgttaacatgacaattcttgatat 607 |||||||||| |||||||| | ||| |||| |||||| || ||||||||||| Sbjct: 1523 atctcatccagaacctcaaaaagtgcttctgctaacataacgattcttgatat 1471
>dbj|AK064352.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A09, full insert sequence Length = 1402 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 555 atctcatccaatacctcaaataatgcctctgttaacatgacaattcttgatat 607 |||||||||| |||||||| | ||| |||| |||||| || ||||||||||| Sbjct: 690 atctcatccagaacctcaaaaagtgcttctgctaacataacgattcttgatat 638 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,951,872 Number of Sequences: 3902068 Number of extensions: 5951872 Number of successful extensions: 158103 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 157933 Number of HSP's gapped (non-prelim): 160 length of query: 746 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 723 effective length of database: 17,143,297,704 effective search space: 12394604239992 effective search space used: 12394604239992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
