ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RECA_WOLPM (P62222) Protein recA (Recombinase A) 29 4.0
2RECA_WOLTR (Q5GSK9) Protein recA (Recombinase A) 28 5.2
3PDR5_ARATH (Q9ZUT8) Probable pleiotropic drug resistance protein 5 28 5.2
4GBLP_SCHPO (Q10281) Guanine nucleotide-binding protein beta subu... 28 5.2

>RECA_WOLPM (P62222) Protein recA (Recombinase A)|
          Length = 355

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 57  QKLKLTTTQYELHQPNTGRQPLHIASY 137
           +KL ++T    + QP+TG Q LHI  Y
Sbjct: 111 RKLGVSTDDLVISQPDTGEQALHIVEY 137



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>RECA_WOLTR (Q5GSK9) Protein recA (Recombinase A)|
          Length = 355

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 57  QKLKLTTTQYELHQPNTGRQPLHIASY 137
           +KL + T    + QP+TG Q LHI  Y
Sbjct: 111 RKLGVNTDNLVISQPDTGEQALHIVEY 137



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>PDR5_ARATH (Q9ZUT8) Probable pleiotropic drug resistance protein 5|
          Length = 1413

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 153  LFVVACNLLCVTAAAQYLVGVTRTELLLALVSECQNVFTT 34
            L+ + CNLLC    A +L+ +T   ++ A++   Q++F T
Sbjct: 1276 LYAMFCNLLCFNYLAMFLISITPNFMVAAIL---QSLFFT 1312



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>GBLP_SCHPO (Q10281) Guanine nucleotide-binding protein beta subunit-like|
           protein (Receptor of activated protein kinase C)
          Length = 314

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 59  ETKANNNSVRVTPTKYWAAAVTHSKLQ 139
           E KAN N++  +P +YW  A T S ++
Sbjct: 231 EAKANINALVFSPNRYWLCAATGSSIR 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,279,089
Number of Sequences: 219361
Number of extensions: 187238
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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