ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OSKA_DROVI (Q24741) Maternal effect protein oskar 28 5.0
2APT_CLOPE (Q8XJ22) Adenine phosphoribosyltransferase (EC 2.4.2.7... 28 8.4

>OSKA_DROVI (Q24741) Maternal effect protein oskar|
          Length = 594

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 77  SRLALTCKIYQSGKTCSTAASISNEVVGQARARALEVELTELT 205
           +R+ L C+  +  K   +   IS + +  AR R   VEL E+T
Sbjct: 422 ARMELKCRFKKFEKVLQSGLCISGQTINAARQRLRLVELPEMT 464



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>APT_CLOPE (Q8XJ22) Adenine phosphoribosyltransferase (EC 2.4.2.7) (APRT)|
          Length = 172

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 80  RLALTCKIYQSGKTCSTAASISNEVVGQARARALEVELTELTCRER 217
           R+A+   +  +G T +  A +  +  G+    A  +ELTEL  R++
Sbjct: 113 RVAIVDDLLATGGTIAAVAKLVEQAGGEVAGLAFTIELTELKGRDK 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,303,054
Number of Sequences: 219361
Number of extensions: 372679
Number of successful extensions: 990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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