>DPO3A_BACHD (Q9K838) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1116

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
 Frame = -1

Query: 450 VGDTGKGEAFVPESIVRVGKRAGGRDGVVTIKAEDERIKYQGLHHGSSYLEHLNFLS--- 280
           V D GK  A  P  I ++ K   GR G+  +KA +E  + + L H S   + +  L+   
Sbjct: 422 VRDVGKALAIPPNVIEKISKEISGRPGMTLVKAYNENERLRQLVHASDEAQKVMKLARKV 481

Query: 279 --AIRSQGACCPAISLEDGLLSVAIGV---AGQLSIEKGRFVTIEEV 154
               R        + + +  L+  I +    G++ + +G   T+E+V
Sbjct: 482 EGLPRHTSTHAAGVVISEQPLTEVIALQHGQGEVPLTQGTMETVEDV 528

>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 395

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 22/64 (34%), Positives = 27/64 (42%)
 Frame = +3

Query: 396 QPSQCSLEQKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHYQLYLVPFH 575
           Q  Q   +Q+ H     QQQ +  H    QQ  + Q  HD H Q    H H+Q     FH
Sbjct: 145 QQQQQQQQQQFHNHHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHHQ-QQQQFH 203

Query: 576 DKPH 587
           D  H
Sbjct: 204 DHHH 207

>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1874

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 484  SKHAEIKHATTAIIKFYDHICIINYIWYLSMINLILVVNINSSRGHYTNRVR 639
            S + +++  TT ++ F DH C   Y     + +L  V + N S GHY   VR
Sbjct: 1109 SSNHQLQSETTRLLPFIDHYCWWTYRVPSHIADLFSVPSFNRSEGHYQMAVR 1160

>NFS1_DROME (Q9VKD3) Probable cysteine desulfurase, mitochondrial precursor (EC|
           2.8.1.7)
          Length = 462

 Score = 33.5 bits (75), Expect = 0.56
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
 Frame = -1

Query: 360 IKAEDERIKYQG-LHHGSSYLEHLNFLSAIR----SQGACCPAISLEDGLLSVAIGVAGQ 196
           I+  D +  Y G L+   +Y+E  + L A++    S G+ C + SLE   +  AIG    
Sbjct: 346 IRNGDAKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDED 405

Query: 195 LSIEK-----GRFVTIEEV 154
           L+        GRF T+EEV
Sbjct: 406 LAHSSIRFGIGRFTTVEEV 424

>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4083

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = -1

Query: 489  FAEGSRNEQEISVVGDTGKGEAFVPESIVRVGKRAGGRDGVV------TIKAED 346
            F +  + +Q I + GD G G+  V +S++   KR+G ++ +V      T+K ED
Sbjct: 2050 FYDIQKTQQAIILAGDAGTGKTSVWKSVINSMKRSGAKENIVYIIDTKTLKKED 2103

>DHI1_SAISC (Q29608) Corticosteroid 11-beta-dehydrogenase isozyme 1 (EC|
           1.1.1.146) (11-DH) (11-beta-hydroxysteroid dehydrogenase
           1) (11-beta-HSD1)
          Length = 290

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = -1

Query: 450 VGDTGKGEAFVPESIVRVGKRAGGRDGVVTIKAEDERIKY--QGLHHGSSYLEHLNFLSA 277
           +  T +   F  + + + GK  GG D ++     +  + +    +HH    +E +NFLS 
Sbjct: 88  IAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNFFHDDIHHVRKSME-VNFLSY 146

Query: 276 IRSQGACCPAISLEDGLLSVAIGVAGQLS 190
           +    A  P +   +G + +   VAG+++
Sbjct: 147 VVLTVAAMPMLKQSNGSIVIVSSVAGKVA 175

>Y4HM_RHISN (P55480) Hypothetical protein y4hM precursor|
          Length = 403

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
 Frame = -1

Query: 573 GKVPDIIDNAYVIIEFDNGCRGMLDLCMFAEGSRNEQEISVVGDTG--KGEAFVPESI-- 406
           G V  + D AYV    +NG  G+L +   A G      I V GD G  + +   PE++  
Sbjct: 239 GAVKAMEDTAYVTFRLENGAPGILWVTQAAPGQYCGLRIRVWGDRGGLEWDQEKPEALRY 298

Query: 405 VRVGKR-----AGGRDGVVTIKAEDERIKYQGLHHGSSYLE-------HLNFLSAIRSQG 262
           V +G++      G   G+V    E ER+ +    HG + ++             A R  G
Sbjct: 299 VPLGEQEQIFVRGHGSGIV---PEAERLIHLPRGHGEALVDAWANLYAEAGVAVAARRAG 355

Query: 261 ACCPAISLEDGLLSVAIGVAGQLSIE 184
              P  S+E  L  V  G+ G L I+
Sbjct: 356 YALPKDSVE--LSGVEDGLKGMLFID 379

>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 311

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
 Frame = +3

Query: 420 QKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHYQLYLVPFHDKP----- 584
           Q+   F  HQQQ+   H ++  Q  + Q  HD   Q    H H+      FHD P     
Sbjct: 178 QQKQQFHDHQQQQQQFHDHHHHQ--QQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQ 235

Query: 585 ---HPCG*HQ*LQRPLHEQGSH 641
              HP    Q   RP  +Q  H
Sbjct: 236 FHDHPQQKQQFHDRPQQQQQFH 257



 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +3

Query: 417 EQKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHYQLYLVPFHDKPH 587
           +Q+   F  H QQK   H ++ QQ  + Q  HD H Q    H H Q     FHD  H
Sbjct: 145 QQQQQQFHNHHQQKQQFHDHHQQQ--QQQQFHDHHQQKQQFHDHQQ-QQQQFHDHHH 198

>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 355

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 417 EQKLHPFQCHQQQKFPAHFYYLQQTCRDQACHDSHY----QIL*SHMHYQLYLVPFHD 578
           +Q+   F  HQQQK   H +  QQ    Q  HD H+    Q    H H+Q     FHD
Sbjct: 184 QQQQQQFHDHQQQKQQFHDHQQQQ----QQFHDHHHQQQQQQFHDHHHHQQQQQQFHD 237



 Score = 30.0 bits (66), Expect = 6.2
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 417 EQKLHPFQCH----QQQKFPAHFYYLQQTCRDQACHDSHYQIL*SHMHY-QLYLVPFHDK 581
           +Q+   F  H    QQQ+F  H ++ QQ    Q  HD H Q    H H+ Q     FHD 
Sbjct: 204 QQQQQQFHDHHHQQQQQQFHDHHHHQQQ---QQQFHDHHQQKQQFHDHHQQQQQQQFHDH 260

Query: 582 P 584
           P
Sbjct: 261 P 261

>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific|
            SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase
            complex subunit SET1) (SET-domain-containing protein 1A)
          Length = 1707

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
 Frame = -1

Query: 528  FDNGCRGMLDLCMFAEGSRNEQEISVVGDTGKGEAFVP----ESIVRVGKRAG--GRDGV 367
            F +G RG L L  F    +   EIS   +  +     P    E      K AG  GR G 
Sbjct: 880  FGSGLRGALRLPSFKVKRKEPSEISEASEEKRPRPSTPAEEDEDDPEQEKEAGEPGRPGT 939

Query: 366  VTIKAEDERIKYQGLHHGSSYLE 298
               K ++ER K QG H  S  L+
Sbjct: 940  KPPKRDEERGKTQGKHRKSFALD 962

>ISCS_VIBPA (Q87S28) Cysteine desulfurase (EC 2.8.1.7)|
          Length = 404

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
 Frame = -1

Query: 366 VTIKAEDERIKYQGLHHGSSYLEHLNFLSAIR----SQGACCPAISLEDGLLSVAIGVAG 199
           VT+  + E+   Q L+   +++E  + L +++    S G+ C + SLE   +  A+G+  
Sbjct: 287 VTVNGDLEQRVPQNLNISFAFVEGESLLMSLKDLAVSSGSACTSASLEPSYVLRALGMDD 346

Query: 198 QLS-----IEKGRFVTIEEV 154
           +L+        GRF T EE+
Sbjct: 347 ELAHSSVRFSFGRFTTEEEI 366

>RPC1_HUMAN (O14802) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)|
            (RPC155) (RPC1)
          Length = 1391

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
 Frame = -1

Query: 645  ADANPVRVMASGAIDVNHKDEVYHGKVPDIIDN-AYVIIEFDNGCRGMLDLCMFAEGSRN 469
            +D NPVR       ++  K + Y GK  D+  N +YV I+      G +D      GS+N
Sbjct: 608  SDDNPVRA------NLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKN 661

Query: 468  EQEISVVGDTGKGEA---------FVPESIVRVGKRAGGRD---GVVTIKAEDERIKYQG 325
                 ++ D G+ EA           P  +   G   G  D   G   +KA+ E +   G
Sbjct: 662  NIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKYELLN-AG 720

Query: 324  LHHGSSYLEHLNFLSAIRSQGACCPAISLE 235
                  Y+E LN    ++ Q  C    +LE
Sbjct: 721  YKKCDEYIEALN-TGKLQQQPGCTAEETLE 749

>A1AG1_MUSCR (P21350) Alpha-1-acid glycoprotein 1 precursor (AGP 1)|
           (Orosomucoid-1) (OMD 1)
          Length = 207

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +1

Query: 241 TDGW---ATCTLRPDGRQEIEVLQVARSVVKPLVLDSFIFGLYRYNSISASCSLSNPHNA 411
           +D W       L PD RQEI+ +Q+    + P +++     L  Y++I   C  ++ H  
Sbjct: 41  SDKWFFIGAAVLNPDYRQEIQKMQMVFFNITPNLIND-TMELREYHTIDDHCVYNSTHLG 99

Query: 412 LWNKSFTLSSVTNNRNFLLISTTFSKH 492
           +  ++ TLS                KH
Sbjct: 100 IQRENGTLSKYVGGVKIFADLIVLRKH 126

>ZAN_HUMAN (Q9Y493) Zonadhesin precursor|
          Length = 2812

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +2

Query: 371 PSLPPARFPTLTMLSGTKASPFPVSPTTEISCSFLLPSANMQRSSMPRQPLSNSMITYAL 550
           P++P  + PT+     T ++  P +PT E + S   PS  M++ ++P +  + S+    +
Sbjct: 780 PTIPTEK-PTIPTEKPTISTEEPTTPTEETTISTEKPSIPMEKPTLPTEETTTSVEETTI 838

Query: 551 SIISGTFP 574
           S    T P
Sbjct: 839 STEKLTIP 846

>SYV_PORGI (Q7MVD7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 876

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
 Frame = -1

Query: 651 LFADANPVRVMASGAIDVNHKDEVYH------------GKVPDIIDNAYVIIEFDNGC 514
           + A   P  +M   A+ VN  DE Y             G+   II++ YV +EF  GC
Sbjct: 213 IVATTRPETIMGDTAVCVNPNDERYRWLRGKRVIVPTVGRAVPIIEDEYVDMEFGTGC 270

>NFS1_ARATH (O49543) Cysteine desulfurase, mitochondrial precursor (EC 2.8.1.7)|
          Length = 453

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
 Frame = -1

Query: 375 DGVVTIKAEDERIKYQG-LHHGSSYLEHLNFLSAIR----SQGACCPAISLEDGLLSVAI 211
           DGVV   + D R  Y G L+   +Y+E  + L  ++    S G+ C + SLE   +  A+
Sbjct: 334 DGVVVNGSMDSR--YVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRAL 391

Query: 210 GVAGQLSIEK-----GRFVTIEEV 154
           GV   ++        GRF T EE+
Sbjct: 392 GVDEDMAHTSIRFGIGRFTTKEEI 415

>K0319_MOUSE (Q5SZV5) Protein KIAA0319 precursor|
          Length = 1081

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 392 FPTLTMLSGTKASPFPVSPTTEISCSFLLPSA 487
           FPT T+L+G    P+P+SPT   +   L  SA
Sbjct: 317 FPTSTVLTGLTPPPWPLSPTASRTVKALAVSA 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,092,476
Number of Sequences: 219361
Number of extensions: 2087934
Number of successful extensions: 6343
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6331
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)