ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal37f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY065971.1| Triticum aestivum phosphoethanolamine methyltransferase mRNA, complete cds Length = 1782 Score = 250 bits (126), Expect = 2e-63 Identities = 183/199 (91%), Gaps = 5/199 (2%) Strand = Plus / Minus Query: 115 gcaccgatcctctttatttaattcttaaccgaagccgaagccgctctgcttccggatcat 174 |||||||||||||||||||| ||||||| | | ||||| |||||||||||||||||| Sbjct: 1635 gcaccgatcctctttattta-ttcttaat---aacagaagcggctctgcttccggatcat 1580 Query: 175 cgcgtagcgtggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 234 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1579 cgcgtc-cacggcgtcgctgctcggcggccagatcacttggtcgcgatgaacagccccca 1521 Query: 235 cttctgctcgccggcggagctccgcttcagcttcgcgctccacccgttgacgatgtcgtc 294 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1520 cttctgctcgccggcagagctccgcttcagcttcgcgctccagccgttgacgatgtcgtc 1461 Query: 295 gtagtcctnctggctgaag 313 |||||||| |||| ||||| Sbjct: 1460 gtagtcctcctgggtgaag 1442 Score = 60.0 bits (30), Expect = 4e-06 Identities = 42/45 (93%), Gaps = 2/45 (4%) Strand = Plus / Minus Query: 9 acgtacgtacacatcat--tatcttacagatccgggtgcccggcc 51 |||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1691 acgtacgtacacattatcttatcttacagatccgggtgcccggcc 1647
>ref|XM_475841.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1488 Score = 109 bits (55), Expect = 5e-21 Identities = 90/102 (88%) Strand = Plus / Minus Query: 212 ttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagcttcgcg 271 ||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||||||| Sbjct: 1484 ttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagcttcgcg 1425 Query: 272 ctccacccgttgacgatgtcgtcgtagtcctnctggctgaag 313 |||| ||||| || ||||| |||||||||| |||| ||||| Sbjct: 1424 ttccagccgttcacaatgtcatcgtagtcctcctgggtgaag 1383
>gb|AY103779.1| Zea mays PCO126548 mRNA sequence Length = 2333 Score = 107 bits (54), Expect = 2e-20 Identities = 98/113 (86%) Strand = Plus / Minus Query: 201 ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 260 ||||| |||||||||| || ||||||| ||||||| ||||||||||||| |||||||| | Sbjct: 1913 ggccaaatcacttggtggcaatgaacaacccccacctctgctcgccggcagagctccgtt 1854 Query: 261 tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctnctggctgaag 313 ||||||||||| |||| || || || |||||||| ||||||| |||| ||||| Sbjct: 1853 tcagcttcgcgttccagccattcacaatgtcgtcatagtcctcctgggtgaag 1801
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 105 bits (53), Expect = 8e-20 Identities = 88/100 (88%) Strand = Plus / Plus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 266 |||| ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 14613 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 14672 Query: 267 tcgcgctccacccgttgacgatgtcgtcgtagtcctnctg 306 ||||| |||| ||||| || ||||| |||||||||| ||| Sbjct: 14673 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 14712
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 105 bits (53), Expect = 8e-20 Identities = 88/100 (88%) Strand = Plus / Plus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 266 |||| ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 40454 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 40513 Query: 267 tcgcgctccacccgttgacgatgtcgtcgtagtcctnctg 306 ||||| |||| ||||| || ||||| |||||||||| ||| Sbjct: 40514 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 40553
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 105 bits (53), Expect = 8e-20 Identities = 88/100 (88%) Strand = Plus / Plus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgcttcagct 266 |||| ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct: 27008031 atcatttggttgcaatgaacagcccccacctctgctcaccggcagagctccgcttcagct 27008090 Query: 267 tcgcgctccacccgttgacgatgtcgtcgtagtcctnctg 306 ||||| |||| ||||| || ||||| |||||||||| ||| Sbjct: 27008091 tcgcgttccagccgttcacaatgtcatcgtagtcctcctg 27008130
>gb|AY626156.3| Zea mays putative phosphoethanolamine N-methyltransferase (PEAMT) mRNA, complete cds Length = 1806 Score = 99.6 bits (50), Expect = 5e-18 Identities = 97/113 (85%) Strand = Plus / Minus Query: 201 ggccagatcacttggtcgcgatgaacagcccccacttctgctcgccggcggagctccgct 260 ||||| |||||||||| || ||||||| ||||||| ||||||| ||| | |||||||| | Sbjct: 1647 ggccaaatcacttggtggcaatgaacaacccccacctctgctcaccgccagagctccgtt 1588 Query: 261 tcagcttcgcgctccacccgttgacgatgtcgtcgtagtcctnctggctgaag 313 ||||||||||| |||| ||||| || |||||||| ||||||| |||| ||||| Sbjct: 1587 tcagcttcgcgttccagccgttcacaatgtcgtcatagtcctcctgggtgaag 1535
>gb|AY551100.1| Oryza sativa (indica cultivar-group) phosphoethanolamine N-methyltransferase (PEAMT) mRNA, complete cds Length = 1986 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Minus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctc 243 ||||||||||||||||||||||||||||| ||||||| Sbjct: 1699 atcacttggtcgcgatgaacagcccccacctctgctc 1663
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Minus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctc 243 ||||||||||||||||||||||||||||| ||||||| Sbjct: 28737732 atcacttggtcgcgatgaacagcccccacctctgctc 28737696
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431H09 Length = 166886 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Minus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctc 243 ||||||||||||||||||||||||||||| ||||||| Sbjct: 120806 atcacttggtcgcgatgaacagcccccacctctgctc 120770
>dbj|AK102037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081D06, full insert sequence Length = 3221 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Minus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctc 243 ||||||||||||||||||||||||||||| ||||||| Sbjct: 2984 atcacttggtcgcgatgaacagcccccacctctgctc 2948
>dbj|AK069137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008P07, full insert sequence Length = 2069 Score = 65.9 bits (33), Expect = 7e-08 Identities = 36/37 (97%) Strand = Plus / Minus Query: 207 atcacttggtcgcgatgaacagcccccacttctgctc 243 ||||||||||||||||||||||||||||| ||||||| Sbjct: 1784 atcacttggtcgcgatgaacagcccccacctctgctc 1748
>ref|NM_192178.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1500 Score = 63.9 bits (32), Expect = 3e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 208 tcacttggtcgcgatgaacagcccccacttctgctc 243 |||||||||||||||||||||||||||| ||||||| Sbjct: 1500 tcacttggtcgcgatgaacagcccccacctctgctc 1465
>gb|AC108554.8| Rattus norvegicus 7 BAC CH230-81L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 157107 Score = 48.1 bits (24), Expect = 0.017 Identities = 24/24 (100%) Strand = Plus / Plus Query: 119 cgatcctctttatttaattcttaa 142 |||||||||||||||||||||||| Sbjct: 32346 cgatcctctttatttaattcttaa 32369
>emb|Z35641.2|CEC38H2 Caenorhabditis elegans Cosmid C38H2, complete sequence Length = 31950 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cacttctgctcgccggcggag 253 ||||||||||||||||||||| Sbjct: 15748 cacttctgctcgccggcggag 15768
>emb|AL691479.15| Human DNA sequence from clone RP11-421G1 on chromosome 1 Contains the PGBD5 gene for piggyBac transposable element derived 5, complete sequence Length = 89077 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 ggccagtgcagccactgaaca 72 ||||||||||||||||||||| Sbjct: 88582 ggccagtgcagccactgaaca 88602
>emb|AL133516.8| Human DNA sequence from clone RP4-553F17 on chromosome 1q42.11-42.3 Contains a CpG island, complete sequence Length = 93130 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 ggccagtgcagccactgaaca 72 ||||||||||||||||||||| Sbjct: 91626 ggccagtgcagccactgaaca 91606
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 tgacgatgtcgtcgtagtcct 302 ||||||||||||||||||||| Sbjct: 377931 tgacgatgtcgtcgtagtcct 377951 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 tgacgatgtcgtcgtagtcct 302 ||||||||||||||||||||| Sbjct: 320695 tgacgatgtcgtcgtagtcct 320715
>gb|AC008285.7| Drosophila melanogaster clone BACR31P16, complete sequence Length = 177084 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 gcttcagcttcgcgctccacccgt 281 |||||||||||||| ||||||||| Sbjct: 169464 gcttcagcttcgcgatccacccgt 169487
>gb|AE007294.1| Sinorhizobium meliloti 1021 plasmid pSymA section 100 of 121 of the complete plasmid sequence Length = 9983 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cgaagccgaagccgctctgc 163 |||||||||||||||||||| Sbjct: 5324 cgaagccgaagccgctctgc 5305
>ref|XM_757246.1| Ustilago maydis 521 hypothetical protein (UM06192.1) partial mRNA Length = 3558 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ccaacacacggccacagcat 108 |||||||||||||||||||| Sbjct: 632 ccaacacacggccacagcat 651
>emb|AL953854.21| Human DNA sequence from clone RP11-211P14 on chromosome 9 Contains a pseudogene similar to part of a vomeronasal 2 family protein and a novel protein similar to contactin associated protein-like 3 (CNTNAP3), complete sequence Length = 157546 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tctttatttaattcttaacc 144 |||||||||||||||||||| Sbjct: 41424 tctttatttaattcttaacc 41405
>emb|BX664730.2| Human DNA sequence from clone RP11-118H15 on chromosome 9 Contains a novel gene, complete sequence Length = 171251 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tctttatttaattcttaacc 144 |||||||||||||||||||| Sbjct: 158902 tctttatttaattcttaacc 158883
>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight novel pseudogenes, two novel genes and three CpG islands, complete sequence Length = 181647 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tctttatttaattcttaacc 144 |||||||||||||||||||| Sbjct: 548 tctttatttaattcttaacc 567
>emb|AL954685.6| Human DNA sequence from clone RP11-237M21 on chromosome 9, complete sequence Length = 130124 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tctttatttaattcttaacc 144 |||||||||||||||||||| Sbjct: 70560 tctttatttaattcttaacc 70579
>emb|AL953883.5| Human DNA sequence from clone RP11-246P17 on chromosome 9, complete sequence Length = 102894 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tctttatttaattcttaacc 144 |||||||||||||||||||| Sbjct: 81891 tctttatttaattcttaacc 81872
>emb|AL590311.5| Human DNA sequence from clone RP11-20F16 on chromosome 9 Contains the 5' end of the GDA gene for guanine deaminase and a CpG island, complete sequence Length = 131933 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcctctttatttaattctta 141 |||||||||||||||||||| Sbjct: 24338 tcctctttatttaattctta 24319
>emb|AL353791.7| Human DNA sequence from clone RP11-475B17 on chromosome 9 Contains the 3' end of novel protein similar to contactin associated protein-like 3 (CNTNAP3) and a pseudogene similar to part of vomeronasal 2 family, complete sequence Length = 208233 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tctttatttaattcttaacc 144 |||||||||||||||||||| Sbjct: 104698 tctttatttaattcttaacc 104717
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cgctgctcggcggccagatc 209 |||||||||||||||||||| Sbjct: 96941 cgctgctcggcggccagatc 96960
>emb|AL683804.15| Mouse DNA sequence from clone RP23-17F2 on chromosome 1 Contains a SEC61 gamma subunit (Sec61g) pseudogene, a limb expression 1 homolog (chicken) (Lix1) pseudogene, a novel pseudogene, the 5' end of the gene for an ortholog of human Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 RAPH1 and a CpG island, complete sequence Length = 198631 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 acatcattatcttacagatc 38 |||||||||||||||||||| Sbjct: 85216 acatcattatcttacagatc 85235
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tggcgtcgctgctcggcggc 203 |||||||||||||||||||| Sbjct: 1266679 tggcgtcgctgctcggcggc 1266698
>gb|AC012049.8| Homo sapiens chromosome 10 clone RP11-76F22, complete sequence Length = 142656 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 atcctctttatttaattctt 140 |||||||||||||||||||| Sbjct: 125275 atcctctttatttaattctt 125294
>ref|NM_143309.1| Drosophila melanogaster CG13972-RA (CG13972), mRNA Length = 1347 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 gcttcagcttcgcgctccacccgt 281 |||||||||||||| ||||||||| Sbjct: 1094 gcttcagcttcgcgatccacccgt 1071
>gb|AC022537.8| Homo sapiens chromosome 10 clone RP11-40C11, complete sequence Length = 154939 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 atcctctttatttaattctt 140 |||||||||||||||||||| Sbjct: 76263 atcctctttatttaattctt 76282
>gb|AY194228.1| Enterobacter cloacae succinate dehydrogenase cytochrome b-556 subunit (sdhC), succinate dehydrogenase hydrophobic membrane anchor protein (sdhD), succinate dehydrogenase flavoprotein subunit (sdhA), and succinate dehydrogenase iron-sulfur protein (sdhB) genes, complete cds; and 2-oxoglutarate dehydrogenase E1 component (sucA) gene, partial cds Length = 6771 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 ccccacttctgctcgccggcggag 253 ||||||||||||||||||| |||| Sbjct: 6123 ccccacttctgctcgccggaggag 6100
>gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, region 98A-98B, BAC clone BACR15D01, complete sequence Length = 180499 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 gcttcagcttcgcgctccacccgt 281 |||||||||||||| ||||||||| Sbjct: 30801 gcttcagcttcgcgatccacccgt 30824
>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 109003 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 ttccggatcatcgcgtagcgtggc 187 |||| ||||||||||||||||||| Sbjct: 92074 ttcctgatcatcgcgtagcgtggc 92051
>gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99 of 118 of the complete sequence Length = 224910 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 gcttcagcttcgcgctccacccgt 281 |||||||||||||| ||||||||| Sbjct: 79987 gcttcagcttcgcgatccacccgt 80010
>dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-100N3, complete sequences Length = 159372 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tcctctttatttaattctta 141 |||||||||||||||||||| Sbjct: 103987 tcctctttatttaattctta 104006
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gacgatgtcgtcgtagtcct 302 |||||||||||||||||||| Sbjct: 1075622 gacgatgtcgtcgtagtcct 1075603
>emb|AL591855.11| Human DNA sequence from clone RP11-4C12 on chromosome 9, complete sequence Length = 153214 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 tctttatttaattcttaacc 144 |||||||||||||||||||| Sbjct: 6785 tctttatttaattcttaacc 6804 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,386,603 Number of Sequences: 3902068 Number of extensions: 2386603 Number of successful extensions: 46483 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46315 Number of HSP's gapped (non-prelim): 166 length of query: 313 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 291 effective length of database: 17,147,199,772 effective search space: 4989835133652 effective search space used: 4989835133652 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
