ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal37f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain dise... 36 0.13
2MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 33 0.64
3LYPD3_HUMAN (O95274) Ly6/PLAUR domain-containing protein 3 precu... 33 0.84
4NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20) 31 4.2

>IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain disease protein)|
           (HDC)
          Length = 290

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -1

Query: 307 PDPSTRNRTLRTPPTHPRCSATR---TPTPAPSCELPRQCDEHDAKPRLAA 164
           P+P    ++  TPP  PRC   +   TP P P C  P+ CD     PR  A
Sbjct: 28  PEP----KSCDTPPPCPRCPEPKSCDTPPPCPRCPEPKSCDTPPPCPRCPA 74



 Score = 30.8 bits (68), Expect = 4.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 283 TLRTPPTHPRCSATRTPTPAPSCELPRQCDEHDAKPR 173
           T  T P  P   +  TP P P C  P+ CD     PR
Sbjct: 20  TTHTCPRCPEPKSCDTPPPCPRCPEPKSCDTPPPCPR 56



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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 301  PSTRNRTLRTPPTHPRCSATRTPTPAPSCELPRQCDEHDAKP 176
            PST +  +  PPT      T TP  +   ELP+Q D+   +P
Sbjct: 3622 PSTPHSDITAPPTPGISETTSTPAVSTPSELPQQADQESVEP 3663



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>LYPD3_HUMAN (O95274) Ly6/PLAUR domain-containing protein 3 precursor|
           (GPI-anchored metastasis-associated protein C4.4A
           homolog) (Matrigel-induced gene C4 protein) (MIG-C4)
          Length = 346

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
 Frame = -1

Query: 307 PDPSTRNRT--LRTPPTHP-RCSATRTPTPAPSCELPRQCDEHDA----KPRLAAAVSTI 149
           P+P+T   T  + T  + P R ++T  P PAP+ + PRQ  EH+A    +PRL    +  
Sbjct: 244 PEPTTVASTTSVTTSTSAPVRPTSTTKPMPAPTSQTPRQGVEHEASRDEEPRLTGGAAGH 303

Query: 148 KPRS 137
           + RS
Sbjct: 304 QDRS 307



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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 307 PDPSTRNRTLRTPPTHPRCSATRTPTPAPS-CELPRQCDEHDAKPRLAAAVSTIKPRS 137
           P PS       TP  HPR  +  +P+P+PS  + P   +     P  + +V+++ P S
Sbjct: 171 PSPSPSPSPRSTPIPHPRKRSPASPSPSPSLSKSPSPSESPSLAPSPSDSVASLAPSS 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,714,372
Number of Sequences: 219361
Number of extensions: 987175
Number of successful extensions: 3832
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3780
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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