ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal36p20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466676.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
2ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
3emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethion... 56 1e-04
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
5dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
7dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
8dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
9dbj|AK059503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
10gb|AC090022.12| Homo sapiens 12 BAC RP11-154D9 (Roswell Park Can... 42 1.5
11gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 1... 42 1.5
12gb|AC156561.3| Mus musculus BAC clone RP24-264F22 from chromosom... 40 6.0
13gb|AC166095.3| Mus musculus BAC clone RP24-494O2 from chromosome... 40 6.0
14gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's ... 40 6.0
15gb|AC131586.10| Mus musculus chromosome 14, clone RP24-226L18, c... 40 6.0
16gb|AY180139.1| Phytomonas sp. Ascl.cu.Vz small subunit ribosomal... 40 6.0
17gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome... 40 6.0
18gb|AC124422.5| Mus musculus BAC clone RP24-326L13 from chromosom... 40 6.0
19gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete se... 40 6.0
20gb|AC147499.5| Medicago truncatula clone mth2-22h5, complete seq... 40 6.0
21gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete se... 40 6.0
22gb|AC166080.2| Mus musculus BAC clone RP23-3N5 from chromosome 1... 40 6.0
23emb|AL590722.15| Human DNA sequence from clone RP11-57J6 on chro... 40 6.0
24gb|AC008667.10| Homo sapiens chromosome 5 clone CTB-35F21, compl... 40 6.0
25gb|AC164295.2| Mus musculus BAC clone RP24-252L3 from chromosome... 40 6.0
26gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete seq... 40 6.0
27gb|AC074140.5| Homo sapiens chromosome 19 clone LLNLF-18A12, com... 40 6.0
28dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31... 40 6.0
29dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, U... 40 6.0
30gb|AC154806.2| Mus musculus BAC clone RP23-78F6 from chromosome ... 40 6.0
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
32dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region 40 6.0
33dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34dbj|AP003704.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
35gb|AY913760.1| Oryzias javanicus choriogenin L mRNA, complete cds 40 6.0
36gb|AC006312.8|AC006312 Homo sapiens chromosome 9, clone hRPK.40... 40 6.0
37emb|AL928998.9| Mouse DNA sequence from clone RP23-58A8 on chrom... 40 6.0
38gb|AC134253.4| Mus musculus BAC clone RP23-473B17 from 14, compl... 40 6.0
39gb|AC140256.3| Mus musculus BAC clone RP23-299A24 from 14, compl... 40 6.0
40gb|AC134455.3| Mus musculus BAC clone RP23-294B15 from 14, compl... 40 6.0
41gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome... 40 6.0
42emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-1... 40 6.0
43gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome... 40 6.0
44gb|AC166344.4| Mus musculus BAC clone RP24-63B17 from chromosome... 40 6.0 
>ref|XM_466676.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1750

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                        
Query: 289  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 1396 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1337

                                                                        
Query: 349  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1336 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1277

                                           
Query: 409  ccccaacattcagcctctcgccccangtccc 439
            |||| |||| ||||| || | |||| |||||
Sbjct: 1276 ccccgacatccagccccttggcccaggtccc 1246



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 168  catcagaagctcctcatcttcttacc 193
            |||||| |||||||||||||||||||
Sbjct: 1508 catcagcagctcctcatcttcttacc 1483
to top
>ref|XM_506863.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1476_F05.33 mRNA
          Length = 1982

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                        
Query: 289  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 1628 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1569

                                                                        
Query: 349  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1568 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1509

                                           
Query: 409  ccccaacattcagcctctcgccccangtccc 439
            |||| |||| ||||| || | |||| |||||
Sbjct: 1508 ccccgacatccagccccttggcccaggtccc 1478



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 168  catcagaagctcctcatcttcttacc 193
            |||||| |||||||||||||||||||
Sbjct: 1740 catcagcagctcctcatcttcttacc 1715
to top
>emb|AJ251899.1|OSA251899 Oryza sativa mRNA for S-adenosylmethionine decarboxylase 2 (adometDC2
            gene)
          Length = 1971

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                        
Query: 289  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 1614 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1555

                                                                        
Query: 349  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1554 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1495

                                           
Query: 409  ccccaacattcagcctctcgccccangtccc 439
            |||| |||| ||||| || | |||| |||||
Sbjct: 1494 ccccgacatccagccccttggcccaggtccc 1464



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 168  catcagaagctcctcatcttcttacc 193
            |||||| |||||||||||||||||||
Sbjct: 1726 catcagcagctcctcatcttcttacc 1701
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                            
Query: 289      agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
                |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 24067315 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 24067256

                                                                            
Query: 349      ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
                |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 24067255 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 24067196

                                               
Query: 409      ccccaacattcagcctctcgccccangtccc 439
                |||| |||| ||||| || | |||| |||||
Sbjct: 24067195 ccccgacatccagccccttggcccaggtccc 24067165



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 168      catcagaagctcctcatcttcttacc 193
                |||||| |||||||||||||||||||
Sbjct: 24067427 catcagcagctcctcatcttcttacc 24067402
to top
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A05
          Length = 174290

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                         
Query: 289   agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
             |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 26056 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 25997

                                                                         
Query: 349   ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
             |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 25996 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 25937

                                            
Query: 409   ccccaacattcagcctctcgccccangtccc 439
             |||| |||| ||||| || | |||| |||||
Sbjct: 25936 ccccgacatccagccccttggcccaggtccc 25906



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 168   catcagaagctcctcatcttcttacc 193
             |||||| |||||||||||||||||||
Sbjct: 26168 catcagcagctcctcatcttcttacc 26143
to top
>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1476_F05
          Length = 125426

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                          
Query: 289    agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
              |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 102353 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 102294

                                                                          
Query: 349    ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
              |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 102293 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 102234

                                             
Query: 409    ccccaacattcagcctctcgccccangtccc 439
              |||| |||| ||||| || | |||| |||||
Sbjct: 102233 ccccgacatccagccccttggcccaggtccc 102203



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 168    catcagaagctcctcatcttcttacc 193
              |||||| |||||||||||||||||||
Sbjct: 102465 catcagcagctcctcatcttcttacc 102440
to top
>dbj|AK070259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041P13, full
            insert sequence
          Length = 1982

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                        
Query: 289  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 1628 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1569

                                                                        
Query: 349  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1568 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1509

                                           
Query: 409  ccccaacattcagcctctcgccccangtccc 439
            |||| |||| ||||| || | |||| |||||
Sbjct: 1508 ccccgacatccagccccttggcccaggtccc 1478



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 168  catcagaagctcctcatcttcttacc 193
            |||||| |||||||||||||||||||
Sbjct: 1740 catcagcagctcctcatcttcttacc 1715
to top
>dbj|AK062133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E08, full
            insert sequence
          Length = 1750

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                        
Query: 289  agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
            |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 1396 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 1337

                                                                        
Query: 349  ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
            |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 1336 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 1277

                                           
Query: 409  ccccaacattcagcctctcgccccangtccc 439
            |||| |||| ||||| || | |||| |||||
Sbjct: 1276 ccccgacatccagccccttggcccaggtccc 1246



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 168  catcagaagctcctcatcttcttacc 193
            |||||| |||||||||||||||||||
Sbjct: 1508 catcagcagctcctcatcttcttacc 1483
to top
>dbj|AK059503.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A07, full
           insert sequence
          Length = 1232

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                       
Query: 289 agcaattcagaacagatcttggcgacccactggagtcttcaccggcagcagtgaagctct 348
           |||||| ||||||||||| |||||||||  ||| |  |||| | | ||||||||||||||
Sbjct: 860 agcaatgcagaacagatcgtggcgacccggtggcgatttcagcagtagcagtgaagctct 801

                                                                       
Query: 349 ggtagatgagagagcccccgccaggcagctcctggacgaccatgttggtgctatcataga 408
           |||| |||||  | |||||   ||||||||||||  | ||||||||| ||| |  |||| 
Sbjct: 800 ggtaaatgagcaaacccccagaaggcagctcctgctcaaccatgttgctgcaagaatagg 741

                                          
Query: 409 ccccaacattcagcctctcgccccangtccc 439
           |||| |||| ||||| || | |||| |||||
Sbjct: 740 ccccgacatccagccccttggcccaggtccc 710



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 168 catcagaagctcctcatcttcttacc 193
           |||||| |||||||||||||||||||
Sbjct: 972 catcagcagctcctcatcttcttacc 947
to top
>gb|AC090022.12| Homo sapiens 12 BAC RP11-154D9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 126469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     atacaggtatttccatacatc 27
             |||||||||||||||||||||
Sbjct: 50251 atacaggtatttccatacatc 50271
to top
>gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 12, complete sequence
          Length = 194497

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      atacaggtatttccatacatc 27
              |||||||||||||||||||||
Sbjct: 117485 atacaggtatttccatacatc 117505
to top
>gb|AC156561.3| Mus musculus BAC clone RP24-264F22 from chromosome 14, complete
             sequence
          Length = 170677

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aaatctctaataagaacaaa 120
             ||||||||||||||||||||
Sbjct: 86771 aaatctctaataagaacaaa 86790
to top
>gb|AC166095.3| Mus musculus BAC clone RP24-494O2 from chromosome 14, complete sequence
          Length = 155918

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaatctctaataagaacaaa 120
             ||||||||||||||||||||
Sbjct: 24625 aaatctctaataagaacaaa 24606
to top
>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 245677

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 178    tcctcatcttcttaccatcccccc 201
              ||||||||||| ||||||||||||
Sbjct: 111780 tcctcatcttcctaccatcccccc 111757
to top
>gb|AC131586.10| Mus musculus chromosome 14, clone RP24-226L18, complete sequence
          Length = 171023

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    cagaaaacgctcaccatttt 59
             ||||||||||||||||||||
Sbjct: 27771 cagaaaacgctcaccatttt 27752
to top
>gb|AY180139.1| Phytomonas sp. Ascl.cu.Vz small subunit ribosomal RNA gene, partial
            sequence; internal transcribed spacer 1, 5.8S ribosomal
            RNA gene and internal transcribed spacer 2, complete
            sequence; and large subunit ribosomal RNA gene, partial
            sequence
          Length = 1112

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 192  ccatcccccctcctctcatccttctcct 219
            ||||||||||||||||||  ||||||||
Sbjct: 1041 ccatcccccctcctctcacacttctcct 1068
to top
>gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome 9, complete
           sequence
          Length = 145102

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 186 ttcttaccatcccccctcctctca 209
           |||||||| |||||||||||||||
Sbjct: 793 ttcttaccctcccccctcctctca 816
to top
>gb|AC124422.5| Mus musculus BAC clone RP24-326L13 from chromosome 9, complete sequence
          Length = 174375

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 186    ttcttaccatcccccctcctctca 209
              |||||||| |||||||||||||||
Sbjct: 145098 ttcttaccctcccccctcctctca 145121
to top
>gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete sequence
          Length = 127018

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   gctcctcatcttcttaccat 195
             ||||||||||||||||||||
Sbjct: 39981 gctcctcatcttcttaccat 39962
to top
>gb|AC147499.5| Medicago truncatula clone mth2-22h5, complete sequence
          Length = 128625

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   gacgaccatgttggtgctat 402
             ||||||||||||||||||||
Sbjct: 33770 gacgaccatgttggtgctat 33789
to top
>gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete sequence
          Length = 125303

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   gctcctcatcttcttaccat 195
             ||||||||||||||||||||
Sbjct: 87037 gctcctcatcttcttaccat 87056
to top
>gb|AC166080.2| Mus musculus BAC clone RP23-3N5 from chromosome 14, complete sequence
          Length = 198220

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aaatctctaataagaacaaa 120
              ||||||||||||||||||||
Sbjct: 125622 aaatctctaataagaacaaa 125641
to top
>emb|AL590722.15| Human DNA sequence from clone RP11-57J6 on chromosome 9 Contains a
            novel gene (FLJ21673), complete sequence
          Length = 12053

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  aaggaaagcatccaccttgg 261
            ||||||||||||||||||||
Sbjct: 4685 aaggaaagcatccaccttgg 4704
to top
>gb|AC008667.10| Homo sapiens chromosome 5 clone CTB-35F21, complete sequence
          Length = 189049

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    gccatcagaagctcctcatcttct 189
              |||||||||||| |||||||||||
Sbjct: 120532 gccatcagaagcccctcatcttct 120509
to top
>gb|AC164295.2| Mus musculus BAC clone RP24-252L3 from chromosome 14, complete sequence
          Length = 182008

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaatctctaataagaacaaa 120
             ||||||||||||||||||||
Sbjct: 54044 aaatctctaataagaacaaa 54025
to top
>gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete sequence
          Length = 129121

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    gacgaccatgttggtgctat 402
              ||||||||||||||||||||
Sbjct: 111684 gacgaccatgttggtgctat 111703
to top
>gb|AC074140.5| Homo sapiens chromosome 19 clone LLNLF-18A12, complete sequence
          Length = 37049

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  cctcctctcatccttctcct 219
            ||||||||||||||||||||
Sbjct: 2485 cctcctctcatccttctcct 2504
to top
>dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31, MOG, TRIM15, KRAB,
             TRIM40 genes, complete cds
          Length = 143480

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   ccctcctctcatccttctcc 218
             ||||||||||||||||||||
Sbjct: 14358 ccctcctctcatccttctcc 14377
to top
>dbj|AB158486.1| Sus scrofa PPP1R11, ZNRD1, RNF39, GABBR1, MOG, UBD, OLF42-3, OLF42-2,
              OLF42-1, KRAB genes, complete cds
          Length = 156044

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    ccctcctctcatccttctcc 218
              ||||||||||||||||||||
Sbjct: 108510 ccctcctctcatccttctcc 108529
to top
>gb|AC154806.2| Mus musculus BAC clone RP23-78F6 from chromosome 14, complete sequence
          Length = 218522

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aaatctctaataagaacaaa 120
             ||||||||||||||||||||
Sbjct: 45074 aaatctctaataagaacaaa 45093
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 195     tcccccctcctctcatcctt 214
               ||||||||||||||||||||
Sbjct: 2757511 tcccccctcctctcatcctt 2757492
to top
>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region
          Length = 425935

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    cagaagctcctcatcttctt 190
              ||||||||||||||||||||
Sbjct: 342145 cagaagctcctcatcttctt 342126
to top
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1364A02
          Length = 137933

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   tcccccctcctctcatcctt 214
             ||||||||||||||||||||
Sbjct: 61072 tcccccctcctctcatcctt 61053
to top
>dbj|AP003704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1048_C10
          Length = 99194

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   tcccccctcctctcatcctt 214
             ||||||||||||||||||||
Sbjct: 64522 tcccccctcctctcatcctt 64503
to top
>gb|AY913760.1| Oryzias javanicus choriogenin L mRNA, complete cds
          Length = 1502

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 89  agcaggaacaggaaatctct 108
           ||||||||||||||||||||
Sbjct: 278 agcaggaacaggaaatctct 259
to top
>gb|AC006312.8|AC006312 Homo sapiens chromosome 9, clone  hRPK.401_G_18, complete sequence
          Length = 207656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    aaggaaagcatccaccttgg 261
              ||||||||||||||||||||
Sbjct: 149428 aaggaaagcatccaccttgg 149409
to top
>emb|AL928998.9| Mouse DNA sequence from clone RP23-58A8 on chromosome 2, complete
             sequence
          Length = 115361

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 194   atcccccctcctctcatccttctc 217
             ||||||||||||||| ||||||||
Sbjct: 29360 atcccccctcctctcctccttctc 29383
to top
>gb|AC134253.4| Mus musculus BAC clone RP23-473B17 from 14, complete sequence
          Length = 200426

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aaatctctaataagaacaaa 120
              ||||||||||||||||||||
Sbjct: 180809 aaatctctaataagaacaaa 180828
to top
>gb|AC140256.3| Mus musculus BAC clone RP23-299A24 from 14, complete sequence
          Length = 197168

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aaatctctaataagaacaaa 120
              ||||||||||||||||||||
Sbjct: 153300 aaatctctaataagaacaaa 153319
to top
>gb|AC134455.3| Mus musculus BAC clone RP23-294B15 from 14, complete sequence
          Length = 186427

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aaatctctaataagaacaaa 120
              ||||||||||||||||||||
Sbjct: 166934 aaatctctaataagaacaaa 166953
to top
>gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome 14, complete
          sequence
          Length = 245591

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 40 cagaaaacgctcaccatttt 59
          ||||||||||||||||||||
Sbjct: 34 cagaaaacgctcaccatttt 53
to top
>emb|AL355112.4|CNS05TCB Human chromosome 14 DNA sequence BAC R-159D23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 147454

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    caggtatttccatacatctg 29
             ||||||||||||||||||||
Sbjct: 37238 caggtatttccatacatctg 37257
to top
>gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome 14, complete sequence
          Length = 233946

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    aaatctctaataagaacaaa 120
              ||||||||||||||||||||
Sbjct: 116499 aaatctctaataagaacaaa 116480
to top
>gb|AC166344.4| Mus musculus BAC clone RP24-63B17 from chromosome 14, complete
            sequence
          Length = 224882

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  aaatctctaataagaacaaa 120
            ||||||||||||||||||||
Sbjct: 2309 aaatctctaataagaacaaa 2328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,634,529
Number of Sequences: 3902068
Number of extensions: 3634529
Number of successful extensions: 71681
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71549
Number of HSP's gapped (non-prelim): 114
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top